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Schistosoma mansoni
cluster # 10556 cluster # 10556       Sequences # 18       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10556#0 length = 1140 sequences # 14  
consensus_10556#1 length = 374 sequences # 1  
consensus_10556#2 length = 339 sequences # 1  
consensus_10556#3 length = 269 sequences # 1  
consensus_10556#4 length = 225 sequences # 1  

consensusID : consensus_10556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1140
fasta sequence
                              [TGAGTGCTTTTGATAAAATAGAAATCTGCAAATTTGTTCGTACACAGTAAATCGACATGAGATAGAAACAAAAGATTTCAGTAAGGTAGGTCTTAATCCTTTGAAAAAAGCTGCAGCTCCTTCCATTTGCCATATTTCAAGTAAACACCTATACAGACCATCGTTTCTGATGGGAATTCGACCAAACTGGGCACGCGCTTCTTCAAAACCCCGAACTTGCATACGTTTTTTCACCATATCTAGTGGATATATTACACATTTGGATCCAATCCCTGCAAGTCCTCCAGAGATCAAACTTTGAACAGGACCAACTGGACGGTTACCACTATGGAATTGTGATGACTTATCAATAAGATTGGGATGTAAATAATACTTTCCTTGATTAATCATTTGGTTTAGTGAATGATAAATGGTAAATTGAATTCCTGTCTGTGGTGCTATAAGAAGAAGAGATGGTACAAGCCCACGGAAAAACCCTTGAGCACCTTCACGAGTTATGATGGAAACAGCTGCATGTGACATGCTTCCGTAAGTTTTCGGCTCACCTTGAGCAATGAAACGTGTGCGTAGGACATCTAATGGTTGAGTAACTATCGCTGCTAAAGAGCCCGCTCCGCATCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAATATTTTGTTATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAACTGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCTGACGGCTTGCAAAAGACCTTGATACTTGCTCGTCCTGGAAACTTCGATTGGTTCCATTTGTAGCTGAAAACGTATTTTAATTACATCCAAAGGTTGGACGACTGCCCTAGCAACAAAACCACTGACAGAGCCAGCAAGAAGGTACTCATTTTTCGATAAGCCAATTTCTCTATCCTGTACTTGCACCATCACTCAAGTTTTTATATACTTGACATTTTTAACTGAGTTTACGGTGGCAACTGCGTTAGTTGTTCAGCAACGCGTGACTCGGCACGATGAAAAAAACCGAAAGTTTTCAAAGGCGCCCGCCGT]

[+] EMBL CD160202             [TGAGTGCTTTTGATAAAATAGAAATCTGCAAATTTGTTCGTACACAGTAAATCGACATGAGATAGAAACAAAAGATTTCAGTAAGGTAGGTCTTAATCCTTTGAAAAAAGCTGCAGCTCCTTCCATTTGCCATATTTCAAGTAAACACCTATACAGACCATCGTTTCTGATGGGAATTCGACCAAACTGGGCACGCGCTTCTTCAAAACCCCGAACTTGCATACGTTTTTTCACCATATCTAGTGGATATATTACACATTTGGATCCAATCCCTGCAAGTCCTCCAGAGATCAAACTTTGAACAGGACCAACTGGACGGTTACCACTATGGAATTGTGATGACTTATCAATAAGATTGGGATGTAAATAATACTTTCCTTGATTAATCATTTGGTTTAGTGAATGATAAATGGTAAATTGAATTCCTGTCTGTGGTGCTATAAGAAGAAGAGATGGTACAAGCCCACGGAAAACACCTTGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD151717             [                                                        ATGAGATAGAAACAAAAGATTTCAGTAAGGTAGGTCTTAATCCTTTGAAAAAAGCTGCAGCTCCTTCCATTTGCCATATTTCAAGTAAACACCTATACAGACCATCGTTTCTGATGGGAATTCGACCAAACTGAGCACGCGCTTCTTCAAAACCCCGAACTTGCATACGTTTTTTCACCATATCTAGCGGATATATTACACATTTGGATCCAATCCCTGCAAGTCCTCCAGAGATCAAACTTTGAACAGGACCAACTGGACGGTTACCACTATGGAATTGTGATGACTTATCAATAAGATTGGGATGTAAATAATACTTTCCTTGATTAATCATTTGGTTTAGTGAATGATAAATGGTAAATTGAATTCCTGTCTGTGGTGCTATAAGAAGAAGAGATGGTACAAGCCCACGGAAAAACCCTTGAGCACCTTCACGAGTTATGATGGAAACAGCTGCATGTGACATGCTTCCGTAAGTTTTCAGCTCACCTTGAGCAATGAAACGTGTGCGTAGGACATCTAATGGTTGAGTAACTATCGCTGCTAAAGAGCCCGCTCCGCATCCGCACAGATAGTTACCAACAGGTTTGTAGGTAATAGGTGAGCCGAATATTTTGTTATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTC AAAGTTAGATACTGGACACTAGTGAACGTAACCGATTGCATTTGAGCAGG ACGTGCACTTTCCAAAAGGC ATGGCACCCTCTTCCCTGCTTATGC                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BG931449             [                                                                                                                                                                                              GCACGCGCTTCTTCAAAACCCCGAACTTGCATACGTTTTTTCACCATATCTAGTGGATATATTACACATTTGGATCCAATCCCTGCAAGTCCTCCAGAGATCAAACTTTGAACAGGACCAACTGGACGGTTACCACTATGGAATTGCGATGACTTATCAATAAGATTGGGATGTAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BG932676             [                                                                                                                                                                                              GCACGCGCTTCTTCAAAACCCCGAACTTGCATACGTTTTTTCACCATATCTAGTGGATATATTACACATTTGGATCCAATCCCTGCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD125141             [                                                                                                                                                                                                            AAAACCCCGAACTTGCATACGTTTTTTCACCATATCTAGTGGATATATTACACATTTGGATCCAATCCCTGCAAGTCCTCCAGAGATCAAACTTTGAACAGGACCAACTGGACGGTTACCACTATGGAATTGTGATGACTTATCAATAAGATTGGGATGTAAATAATACTTTCCTTGATTAATCATTTGGTTTAGTGAATGATAAATGGTAAATTGAATTCCTGTCTGTGGTGCTATAAGAAGAAGAGATGGTACAAGCCCACGGAAAAACCCTTGAGCACCTTCACGAGTTATGATGGAAACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD152594             [                                                                                                                                                                                                                                                                                                          TGAACAGGACCAACTGGACGGTTACCACTATGGAATTGTGATGACTTATCAATAAGATTGGGATGTAAATAATACTTTCCTTGATTAATCATTTGGTTTAGTGAATGATAAATGGTAAATTGAATTCCTGTCTGTGGTGCTATAACAAGAAGAGATGGTACAAGCCCACGGAAAAACCCTTGAGCACCTTCACTAGTTATGATGGAAACAGCTGCATGTGACATGCTTCCCGAAGTTTTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD152964             [                                                                                                                                                                                                                                                                                                          TGAACAGGACCAACTGGACGGTTACCACTATGGAATTGTGATGACTTATCAATAAGATTGGGATGTAAATAATACTTTCCTTGATTAATCATTTGGTTTAGTGAATGATAAATGGTAAATTGAATTCCTGTCTGTGGTGCTATAAGAAGAAGAGATGGTACAAGCCCACGGAAAAACCCTTGAGCACCTTCACGAGTTATGATGGAAACAGCTGCATGTGACATGCTTCCGTAAGTTTTCGGCTCACCTTGAGCAATGAAACGTGTGCGTAGGACATCTAATGGTTGAGTAACTATCGCTGCTAAAGAGCCCGCTCCGCATCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAATATTTTGTTATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAACTGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCTGACGGCTTGCAAAAGACCTTGATACTTGCTCGTCCTGGAAACTTCGATTGGTTCCATTTGTAGCTGAAAACGTATCTTAgt                                                                                                                                                                                                                                       ]
[+] EMBL CD062791             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAGCACCTTCACGAGTTATGATGGAAACAGCTGCATGTGACATGCTTCCGTAAGTTTTCGGCTCACCTTGAGCAATGAAACGTGTGCGTAGGACATCTAATGGTTGAGTAACTATCGCTGCTAAAGAGCCCGCTCCGCATCCGCACAGAAAGTTACCAACAGGCTTGTAGGTAATAGGTAAGCCGAATACTTTGTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BG931592             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCCGTAAGTTTTCGGCTCACCTTGAGCAATGAAACGTGTGCGTAGGACATCTAATGGTTGAGTAACTATCGCTGCTAAAGAGCCCGCTCCGCATCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAATATTTTGTTATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAACTGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCTGACGGCTTGCAAAAGACCTTGATACTTGCTCGTCCTGGAAACTTCGATTGGTTCCACTTGTAGCTGAAAACGTATTTTAATTACATCCAAAGGTTGGACGAC                                                                                                                                                                                                                  ]
[+] EMBL CD157206             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGTAACTATCGCTGCTAAAGAGCCCGCTCCGCATCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAATATTTTGTTATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAACTGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCCTCCTTGCTTATGCACCTGACGGCTTGCAAAAGACCTTGATACTTGCTCGTCCTGGAAACTTCGATTGGTTCCATTTGTAGCTGAAAACGTATTTTAATTACATCCAAAGGTTGGACGACTGCCCTAGCAACAA                                                                                                                                                                                                    ]
[-] EMBL CD192653             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTAACTATCGCTGCTAAAGAGCCCGCTCCGCATCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAATATTTTGTTATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAACTGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCTGACGGCTTGCAAAAGACCTTGATACTTG                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD122872             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGCTGCTAAAGAGCCCGCTCCGCATCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAATACTTTGTTATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAACTGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCTGACGGCTTGCAAAAGACCTTGATACTTGCTCGTCCTGGAAACTTCGATTGGTTCCATTTGTAGCTGAAAACGTATTTTAATTACATCCAAAGGTTGGACGACTGCCCTAGCAACAAAACCACTGACAGAGCCAGCAAGAAGGTACTCATTTTTCGATAAGCCAATTTCTCTATCCTGTACTTGCACCATCACTCAAGTTTTTATATACTTGACATTTTTAACTGAGTTTACGGTGGCAACTGCGTTAGTTGTTCAGCAACGCGTGACTCGGCACGATGAAAAAAACCGAAAGTTTTCAAAGGCGCCCGCCG ]
[-] EMBL CD141956             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGCTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAACCGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCTGACGGCTTGCAAAAGACCTTGATACTTGCTCGTCCTGGAAACTTCGATTGGTTCCATTTGTAGCTGAAAACGTATTTTAATTACATCCAAAGGTTGTACGACTGCCCTAGCAACAAAACCACTGACAGAGCCAGCAAGAAGGTACTCATTTTTCGATAAGCCAATTTCTCTATCCTGTACTTGCACCATCACTCAGGTTTTTATATACTTGACATTTTTAACTGAGTTTACGGTGGCAACTGCGTTAGTTGTTCAGCAACGCGTGACTCGGCACGATGAAAAAAACCGAAAGTTTTCAAAGGCGCCCGCCGT]
[+] EMBL CD063015             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ctccGAAT ACCACAAAAGTAAGAAACTGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCTGACGGCTTGCAAAAGACCTTGATACTTGCTCGTCCTGGAAACTTCGATTGGTTCCATTTGTAGCTGAAAACGTATTTTAATTACATCCAAAGGTTGGACGACTGCCCTAGCAACAAAACCACTGACAGAGCCAG                                                                                                                                                                                  ]


>consensus_10556#0 TGAGTGCTTTTGATAAAATAGAAATCTGCAAATTTGTTCGTACACAGTAAATCGACATGA GATAGAAACAAAAGATTTCAGTAAGGTAGGTCTTAATCCTTTGAAAAAAGCTGCAGCTCC TTCCATTTGCCATATTTCAAGTAAACACCTATACAGACCATCGTTTCTGATGGGAATTCG ACCAAACTGGGCACGCGCTTCTTCAAAACCCCGAACTTGCATACGTTTTTTCACCATATC TAGTGGATATATTACACATTTGGATCCAATCCCTGCAAGTCCTCCAGAGATCAAACTTTG AACAGGACCAACTGGACGGTTACCACTATGGAATTGTGATGACTTATCAATAAGATTGGG ATGTAAATAATACTTTCCTTGATTAATCATTTGGTTTAGTGAATGATAAATGGTAAATTG AATTCCTGTCTGTGGTGCTATAAGAAGAAGAGATGGTACAAGCCCACGGAAAAACCCTTG AGCACCTTCACGAGTTATGATGGAAACAGCTGCATGTGACATGCTTCCGTAAGTTTTCGG CTCACCTTGAGCAATGAAACGTGTGCGTAGGACATCTAATGGTTGAGTAACTATCGCTGC TAAAGAGCCCGCTCCGCATCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAA GCCGAATATTTTGTTATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAAT CACTTCAAAAGTAAGAAACTGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAAC GTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCTGACGGCTTGCAA AAGACCTTGATACTTGCTCGTCCTGGAAACTTCGATTGGTTCCATTTGTAGCTGAAAACG TATTTTAATTACATCCAAAGGTTGGACGACTGCCCTAGCAACAAAACCACTGACAGAGCC AGCAAGAAGGTACTCATTTTTCGATAAGCCAATTTCTCTATCCTGTACTTGCACCATCAC TCAAGTTTTTATATACTTGACATTTTTAACTGAGTTTACGGTGGCAACTGCGTTAGTTGT TCAGCAACGCGTGACTCGGCACGATGAAAAAAACCGAAAGTTTTCAAAGGCGCCCGCCGT



consensusID : consensus_10556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence
                              [GAACTTGCATACGTTTTTTCACCATATCTAGTGGATATATTACACATTTGGATCCAATCCCTGCAAGTCCTCCAGAGATCAAACTTTGAACAGGACCTTAGAGTTGGAAGACATAAGGTTTGTAAAACATTTAACTAAGCAACTGGACGGTTACCACTATGGAATTGTGATGACCTATCAATAAGATTGGGATGTAAATAATACTTTCCTTGATTAATCATTTGGTTTAGTGAATGATAAATGGTAAATTGAATTCCTGTCTGTGGTGCTATAAGAAGAAGAGATGGTACAAGCCCACGGAAAAACCCTTGAGCACCTCCACGAGTTATGATGGAAACAGCTGCATGTGACATGCTTCCGTAAGTTTTCGGCTC]

[-] EMBL CD184390             [GAACTTGCATACGTTTTTTCACCATATCTAGTGGATATATTACACATTTGGATCCAATCCCTGCAAGTCCTCCAGAGATCAAACTTTGAACAGGACCTTAGAGTTGGAAGACATAAGGTTTGTAAAACATTTAACTAAGCAACTGGACGGTTACCACTATGGAATTGTGATGACCTATCAATAAGATTGGGATGTAAATAATACTTTCCTTGATTAATCATTTGGTTTAGTGAATGATAAATGGTAAATTGAATTCCTGTCTGTGGTGCTATAAGAAGAAGAGATGGTACAAGCCCACGGAAAAACCCTTGAGCACCTCCACGAGTTATGATGGAAACAGCTGCATGTGACATGCTTCCGTAAGTTTTCGGCTC]


>consensus_10556#1 GAACTTGCATACGTTTTTTCACCATATCTAGTGGATATATTACACATTTGGATCCAATCC CTGCAAGTCCTCCAGAGATCAAACTTTGAACAGGACCTTAGAGTTGGAAGACATAAGGTT TGTAAAACATTTAACTAAGCAACTGGACGGTTACCACTATGGAATTGTGATGACCTATCA ATAAGATTGGGATGTAAATAATACTTTCCTTGATTAATCATTTGGTTTAGTGAATGATAA ATGGTAAATTGAATTCCTGTCTGTGGTGCTATAAGAAGAAGAGATGGTACAAGCCCACGG AAAAACCCTTGAGCACCTCCACGAGTTATGATGGAAACAGCTGCATGTGACATGCTTCCG TAAGTTTTCGGCTC



consensusID : consensus_10556#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence
                              [ACTGAAGACCAATAGAAATATACAACGCTGAGAAGTTTATTGACGAAATTTGGATTGAGTTACAGCGATAAATCTCATGGTACATAAAGGCTAGGATATTATGAGTGCTTTTGATAAAGTAGAAATCTGCAAATTTGTTCGTACACAGTAAATCGACATGAGATAGAAACAAAAGATTTCAGTAAGGTAGGTCTTAATCCTTTGAAAAAAGCTGCAGCTCCTTCCATTTGCCATATTTCAAGTAAACACCTATACAGACAATCGACTCTGAAGTCAATTCGCGCAGCCAGTGCAATACATTAAGTCTAGAGCGCCCGCCGCGGAGCTGAGCTCCATCTA]

[-] EMBL BG931622             [ACTGAAGACCAATAGAAATATACAACGCTGAGAAGTTTATTGACGAAATTTGGATTGAGTTACAGCGATAAATCTCATGGTACATAAAGGCTAGGATATTATGAGTGCTTTTGATAAAGTAGAAATCTGCAAATTTGTTCGTACACAGTAAATCGACATGAGATAGAAACAAAAGATTTCAGTAAGGTAGGTCTTAATCCTTTGAAAAAAGCTGCAGCTCCTTCCATTTGCCATATTTCAAGTAAACACCTATACAGACAATCGACTCTGAAGTCAATTCGCGCAGCCAGTGCAATACATTAAGTCTAGAGCGCCCGCCGCGGAGCTGAGCTCCATCTA]


>consensus_10556#2 ACTGAAGACCAATAGAAATATACAACGCTGAGAAGTTTATTGACGAAATTTGGATTGAGT TACAGCGATAAATCTCATGGTACATAAAGGCTAGGATATTATGAGTGCTTTTGATAAAGT AGAAATCTGCAAATTTGTTCGTACACAGTAAATCGACATGAGATAGAAACAAAAGATTTC AGTAAGGTAGGTCTTAATCCTTTGAAAAAAGCTGCAGCTCCTTCCATTTGCCATATTTCA AGTAAACACCTATACAGACAATCGACTCTGAAGTCAATTCGCGCAGCCAGTGCAATACAT TAAGTCTAGAGCGCCCGCCGCGGAGCTGAGCTCCATCTA



consensusID : consensus_10556#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence
                              [NNNNNNNNANCGACATCTAATGGTTGAGTAACTATCGCTGCTAAAGAGCCCGCTCCGCATCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAATATTTTGTTATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAACTGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCT]

[-] EMBL CD192396             [NNNNNNNNANCGACATCTAATGGTTGAGTAACTATCGCTGCTAAAGAGCCCGCTCCGCATCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAATATTTTGTTATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAACTGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCT]


>consensus_10556#3 NNNNNNNNANCGACATCTAATGGTTGAGTAACTATCGCTGCTAAAGAGCCCGCTCCGCAT CCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAATATTTTGTTATCT GAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAAC TGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCAAAAGGCA ATGGCACCCTCTTCCTTGCTTATGCACCT



consensusID : consensus_10556#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence
                              [CTAAAGAGCCCGCACCGCACCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAAAANTNNGNCATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAACTGAACACAAGAGAACGNAACCGANNGCATNNGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCAGGCANAAGC]

[-] EMBL CD151623             [CTAAAGAGCCCGCACCGCACCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAAAANTNNGNCATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGTAAGAAACTGAACACAAGAGAACGNAACCGANNGCATNNGAGCAGGAACGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCAGGCANAAGC]


>consensus_10556#4 CTAAAGAGCCCGCACCGCACCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTA AGCCGAAAANTNNGNCATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAA TCACTTCAAAAGTAAGAAACTGAACACAAGAGAACGNAACCGANNGCATNNGAGCAGGAA CGTGACCTTTCCAAAAGGCAATGGCACCCTCTTCCAGGCANAAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10556#0      TGAGTGCTTTTGATAAAATAGAAATCTGCAAATTTGTTCGTACACAGTAAATCGACATGA 60
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      GATAGAAACAAAAGATTTCAGTAAGGTAGGTCTTAATCCTTTGAAAAAAGCTGCAGCTCC 120
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      TTCCATTTGCCATATTTCAAGTAAACACCTATACAGACCATCGTTTCTGATGGGAATTCG 180
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      ACCAAACTGGGCACGCGCTTCTTCAAAACCCCGAACTTGCATACGTTTTTTCACCATATC 240
consensus_10556#1      --------------------------------GAACTTGCATACGTTTTTTCACCATATC 28
consensus_10556#3      -------------------------------------------NNNNNNNNANCGACATC 17
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      -------------------------------ACTGAAGACCAATAGAAATATACAACGCT 29
                                                                                   

consensus_10556#0      TAGTGGATATATTAC-ACATTTGGATCCAATCCCTGCAAGTCCTCCAGAGATCAAACTTT 299
consensus_10556#1      TAGTGGATATATTAC-ACATTTGGATCCAATCCCTGCAAGTCCTCCAGAGATCAAACTTT 87
consensus_10556#3      TAATGGTTGAGTAAC-TATCGCTGCTAAAGAGCCCGCTCCGCATCCGCACAGAAAGTTAC 76
consensus_10556#4      ------------------------CTAAAGAGCCCGCACCGCACCCGCACAGAAAGTTAC 36
consensus_10556#2      GAGAAGTTTATTGACGAAATTTGGATTGAGTTACAGCGATAAATCT-CATGGTACATAAA 88
                                                *  *    * **       *   *    *      

consensus_10556#0      GAACAGGACC-------------------------------------------AACTGGA 316
consensus_10556#1      GAACAGGACCTTAGAGTTGGAAGACATAAGGTTTGTAAAACATTTAACTAAGCAACTGGA 147
consensus_10556#3      CAACAGGTTTGTAGG-----------------------------TAATAGGTAAGCCGAA 107
consensus_10556#4      CAACAGGTTTGTAGG-----------------------------TAATAGGTAAGCCGAA 67
consensus_10556#2      GGCTAGGATATTATGAGTG-------------------------CTTTTGATAAAGTAGA 123
                           ***                                              *     *

consensus_10556#0      CGGTTACCACTATGGAATTGTGATGACTTATCAATAAGATTGGGATGTAAATAATACTTT 376
consensus_10556#1      CGGTTACCACTATGGAATTGTGATGACCTATCAATAAGATTGGGATGTAAATAATACTTT 207
consensus_10556#3      TATTTTGTTATCTGAGATG--AGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACT 165
consensus_10556#4      AANTNNGNCATCTGAGATG--AGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACT 125
consensus_10556#2      AATCTGCAAATTTGTT-----CGTACACAGTAAATCGACATGAGATAGAAACAAAAGATT 178
                                 * **         *      *  *         *     **  *     *

consensus_10556#0      CCT-TGATTAATCATTTGGTT--TAGTGAATGATAAATGGTAAATTGAATTCCTGTCTGT 433
consensus_10556#1      CCT-TGATTAATCATTTGGTT--TAGTGAATGATAAATGGTAAATTGAATTCCTGTCTGT 264
consensus_10556#3      TCA-AAAGTAAGAAACTGAACACTAGTGAACG-TAACCGATTGCATTTGAGCAGGAACGT 223
consensus_10556#4      TCA-AAAGTAAGAAACTGAACACAAGAGAACG-NAACCGANNGCATNNGAGCAGGAACGT 183
consensus_10556#2      TCAGTAAGGTAGGTCTTAATCCTTTGAAAAAAGCTGCAGCTCCTTCCATTTGCCATATTT 238
                        *    *   *     *        *  **        *                    *

consensus_10556#0      GGTGCTATAAGAAGAAGAGATGGTACAAGCCCACGGAAAAACCCTTGAGCACCTTCACGA 493
consensus_10556#1      GGTGCTATAAGAAGAAGAGATGGTACAAGCCCACGGAAAAACCCTTGAGCACCTCCACGA 324
consensus_10556#3      GACCTTTCCAAAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCT-------------- 269
consensus_10556#4      GACCTTTCCAAAAGGCAATGGCACCCTCTTCCAGGCANAAGC------------------ 225
consensus_10556#2      CAAGTAAACACCTATACAGACAATCGACTCTGAAGTCAATTCGCGCAGCCAGTGCAATAC 298
                                *       *                *   *  *                  

consensus_10556#0      GTTATGATGGAAACAGCTGC-ATGTGACATGCTTCCGTAAGTTTTCGGCTCACCTTGAGC 552
consensus_10556#1      GTTATGATGGAAACAGCTGC-ATGTGACATGCTTCCGTAAGTTTTCGGCTC--------- 374
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ATTAAGTCTAGAGCGCCCGCCGCGGAGCTGAGCTCCATCTA------------------- 339
                                                                                   

consensus_10556#0      AATGAAACGTGTGCGTAGGACATCTAATGGTTGAGTAACTATCGCTGCTAAAGAGCCCGC 612
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      TCCGCATCCGCACAGAAAGTTACCAACAGGTTTGTAGGTAATAGGTAAGCCGAATATTTT 672
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      GTTATCTGAGATGAGTAGACTGTTGACTTCACGCAGCCAAGAAAGAATCACTTCAAAAGT 732
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      AAGAAACTGAACACTAGTGAACGTAACCGATTGCATTTGAGCAGGAACGTGACCTTTCCA 792
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      AAAGGCAATGGCACCCTCTTCCTTGCTTATGCACCTGACGGCTTGCAAAAGACCTTGATA 852
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      CTTGCTCGTCCTGGAAACTTCGATTGGTTCCATTTGTAGCTGAAAACGTATTTTAATTAC 912
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      ATCCAAAGGTTGGACGACTGCCCTAGCAACAAAACCACTGACAGAGCCAGCAAGAAGGTA 972
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      CTCATTTTTCGATAAGCCAATTTCTCTATCCTGTACTTGCACCATCACTCAAGTTTTTAT 1032
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      ATACTTGACATTTTTAACTGAGTTTACGGTGGCAACTGCGTTAGTTGTTCAGCAACGCGT 1092
consensus_10556#1      ------------------------------------------------------------
consensus_10556#3      ------------------------------------------------------------
consensus_10556#4      ------------------------------------------------------------
consensus_10556#2      ------------------------------------------------------------
                                                                                   

consensus_10556#0      GACTCGGCACGATGAAAAAAACCGAAAGTTTTCAAAGGCGCCCGCCGT 1140
consensus_10556#1      ------------------------------------------------
consensus_10556#3      ------------------------------------------------
consensus_10556#4      ------------------------------------------------
consensus_10556#2      ------------------------------------------------
                                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)