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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1128 fasta sequence
[ATGGTATTGGCTGGTCTAAAAATCACATACAGTATTAATTTGAATGTCGGGAAGTAATTTTCGTCTGCTTGATGATGACACTCAGTTCATGGACAAGTATCCTAATGGGCTTTCTTTGGTTGATTTGCTGCCATTTTACGACTCCATATCTAAGAATGAACCGCTTAAATTAGAATGGGTTTGTCCAGGCAAAATCGATCCTAACGTTCAGAGGGAAACAACCAAAATTCGTACTGAAACAAATGATAATCCTGTCCCAAAGGTTTCTGAATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTCGACTTCGATGAGTCTCCGAATCAACCATCTATTCCTTCAGTTCCACTTGGTGCTGCTGCTCAAAATGCAAACTTACCACTTAGACGTCTAGCAGGCACTTCCAGACATCCACCTCGCCAACCCCGTGTAGCTAGTATGGATAAAATATTAAATGACTTTTTCAAAACACGCAAAGAACCTTCTTCCCCTGCAGTTGTGACTGAAATACCCACTTCATCTATTACTGCACATTGTATTCCATCGTCTGGAATTTCTCAGGCAACTAATATTTCCAATGACACAAACAAAAGC-AATAATAATAATA-ACTCCGAACAAGATAAACGAGAAGCCCTTGCT-GTTGAACTAGCTAAAGC-TTCAGTGTCACCACAAGTTTATAATCATCCAGATAATATACCTTCAGACTTCACGCTACACGACAATTCTAATGTACGAATTACCTCAAGTGATCAGGTTTCTGCTCCTGTTGTAAACATTTGTGATGAAAGAATAATGGAATGTCATAAATTAGAAGGTACTGATCTTTATGTCAATAACGCTAATTCTTCCGATTACTCTGCTATAAATGTTTCAGACATCTCAGTCACTTCTGTTAGTGTAAATAATATGTTCCAAAGTGAGAATGAGACGCCACATTAAGGCTACTTAATAGTTGTGGTGTAAATTTTCAGTTAATAGAATATATTCCCAAACTCTGCTAACTAAATAATCGCATTTTTGTGAAATATTTATCCAACGGAAATACAAATGCGTAACTGTACATAAAAATTTTGTACACTGGGTACGTTTTATGTAATTTTTTTCCTGTTATCTAAATAAATAATTGA]
[+] EMBL CD140072 [ATGGTATTGGCTGGTCTAAAAATCACATACAGTATTAATTTGAATGTCGGGAAGTAATTTTCGTCTGCTTGATGATGACACTCAGTTCATGGACAAGTATCCTAATGGGCTTTCTTTGGTTGATTTGCTGCCATTTTACGACTCCATATCTAAGAATGAACCGCTTAAATTAGAATGGGTTTGTCCAGGCAAAATCGATCCTAACGTTCAGAGGGAAACAACCAAAATTCGTACTGAAACAAATGATAATCCTGTCCCAAAGGTTTCTGAATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTCGACTTCGATGAGTCTCCGAATCAACCATCTATTCCTTCAGTTCCACTTGGTGCTGCTG ]
[+] EMBL CD083933 [ ggCAAATGATAATCCTGTCCCAAAGGTTTCTGAATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTCGACTTCGATGAGTCTCCGAATCAACCATCTATTCCTTCAGTTCCACTTGGTGCTGCTGCTCAAAATGCAAACTTACCACTTAGACGTCTAGCAGGCACTTCCAGACATCCACCTCGCCAACCCCGTGTAGCTAGTATGGATAAAATATTAAATGACTTTTTCAAAACACGCAAAGAACCTTCTTCCCCTGCAGTTGTGACTGAAATACCCACTTCATCTATTACTGCACATTGTATTCCATCGTCTGGAATTTCTCAGGCAACTAATATTTCCAATGACACAAACAAAAGC AATAATAATAATA ACTCCGAACAAGATAAACGAGAAGCCCTTGCT GTTGAACTAGCTAAAGC TTCAGTGTCA ]
[+] EMBL CD079138 [ CTCGCCAACCCCGTGTAGCTAGTATGGATAAAATATTAAATGACTTTTTCAAAACACGCAAAGAACCTTCTTCCCCTGCAGTTGTGACTGAAATACCCACTTCATCTATTACTGCACATTGTATTCCATCGTCTGGAATTTCTCAGGCAACTAATATTTCCAATGACACAAACAAAAGC AATAATAATAATA ACTCCGAACAAGATAAACGAGAAGCCCTTGCT GTTGAACTAGCTAAAGC TTCAGTGTCACCACAAGTTTATAATCATCCAGATAATATACCTTCAGACTTCACGCTACACGACAATTCTAATGTACGAATTACCTCAAGTGATCAGGTTTCTGCTCCTGTTGTAAACATTTGTGATGAAAGAATAATGGAATGTCATAAATTAGAAGGTACTGATCTTTATGTCAATAACGCTAATTCTTCCGATTACTCTGCTATAAATGTTTCAGACATCTCAGTCACTTCTGTTAGTGTAAATAATATGTTCCAAAGTGAGAATGAGACGCCACATTAAGGCTACTTAATAGTTGTGGTGTAAATTTTCAGTTAATAGAATATATTCCCAAACTCTGCTAACTAAATAATCGCATTNTTGTGAAATAT ]
[-] EMBL CD074626 [ tTTCCATCGTCTGGAATTTCTCAGGCAACTAATATTTCCAATGACACAAACAAAAGC AATAATAATAATA ACTCCGAACAAGATAAACGAGAAGCCCTTGCT GTTGAACTAGCTATAGC TTCAGTGTCACCACAAGTTTATAATCATCCAGATAATATACCTTCAGACTTCACGCTACACGACAATTCTAATGTACGAATTACCTCAAGTGATCAGGTTTCTGCTCCTGTTGTAAACATTTGTGATGAAAGAATAATGGAATGTCATAAATTAGAAGGTACTGATCTTTATGTCAATAACGCTAATTCTTCCGATTACTCTGCTATAAATGTTTCAGACATCTCAGTCACTTCTGTTAGTGTAAATAATATGTTCCAAAGTGAGAATGAGACGCCACATTAAGGCTACTTAATAGTTGTGGTGTAAATTTTCAGTTAATAGAATATATTCCCAAACTCTGCTAACTAAATAATCGCATTTTTGTGAAATATTTATCCAACGGAAATACAAATGCGTAACTGTACATAAAAATTTTGTACACTGGGTACGTTTTATGTAATTTTTTTCCTGTTATCTAAATAAATAATTGA]
[-] EMBL CD183011 [ atTATTTTCCATGCCNCAAAC AAAGCNNAT ATANTTATACTCCCCGACCAAGATAAACGAGAAGCCC TGCTGGTTGACNTAGCT AAGCTTTCAGTGTCACCACCAGTTTATAATCATCCAGATAATATACCTTCAGACTTCACGCTACACGACAATTCTAATGTACGAATTACCTCAAGTGATCAGGTTTCTGCTCCTGTTGTAAACATTTGTGATGAAAGAATAATGGAATGTCATAAATTAGAAGGTACTGATCTTTATGTCAATAACGCTAATTCTTCCGATTACTCTGCTATAAATGTTTCAGACATCTCAGTCACTTCTGTTAGTGTAAATAATATGTTCCAAAGTGAGAATGAGACGCCCCATTAAGGCTACTTAATAGTTGTGGTGTAAATTTTCAGTTAATAGAA ]
[+] EMBL CD145655 [ TAAAGC TTCAGTGTCACCACAAGTTTATAATCATCCAGATAATATACCTTCAAACTTCACGCCACACGACAATTCTAATGTACAAATTACCTCAAGTGATCAGGTTTCTGCTCCTGTTGTAAACATTTGTGATGAAAGAATAATGGAATGTCATAAATTAAAAGGTACTGATCTTTATGTCAATAACGCTAATTCTTCCGATTACTCTGCTATAAATGTTTCAGACATCTCAGTCACTTCTGTTAGTGTAAATAATATGTTCCAAAGTGAGAATGAGACGCCACATTAAGGCTACTTAATAGTTGTGGTGTAAATTTTCAGTTAATAGAATATATTCCCAAACTCTGCTAACTAAATAATCGCATTTTTGTGA ]
[-] EMBL CD182966 [ CAGGTTTCTGCTCCTGTTGTAAACATNTGTGATGAAAGAATAATGGAATGTCATAAATTAGAAGGTACTGATCTTTATGTCAATAACGCTAATTCTTCCGATTACTCTGCTATAAATGTTTCAGACATCTCAGTCACTTCTGTTAGTGTAAATAATATGTTCCAAAGTGAGAATGAGACGCCACATTAAGGCTACTTAATAGTTGTGTTGTAAATTTTCAGTTAATAGAA ]
consensusID : consensus_10565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 801 fasta sequence
[TCGGCACGAGGGTTAAATATTCTGAGAATCACTCAGAATTATTTGATGAGTCGACTGGTTTTTCTTATGATCCTATGAGTCCTTTGGTTAAATGCTCTTATCTTCCTCGTCATTCCATTTGGTGTGAACCTCCCTTAGATTTAAGAAGTAATAAGTCCCAATATGATGAATTGAAATACGGATGCTTAAAATGGGGCGGAAAAGCAGCAGATTCAGTTGTGCTCACATCAATTGTGTGTCATGCTTTGGACAATATTGAGTGCTATGGGAATCGTACTTTCTTGTTACCTGATTATCCCTGTCTTCATTACAAAGGACATTACTTTGTAACAACATTCATATACAGCTTATTACTAGGATTTCTTGGTGTTGATCGACTATGTCTGGGTCATACAGGTACAGGCCTCGGTAAACTCCTAACATTGGGTGGGGCCGGTATTTGGTGGATAGTGGATATCGTTCTTCTCATTCGTGGTGATTTGGGTCCAGCTGATGGAAGTTCCTGGATGCCATTTTACTAGACTTATGTATTGGCTGGTCTAAAAATCACATACAGTATTAATTTGAATGTCGGGAAGTAATTTTCGTCTGCTTGATGATGACACTCAGTTCATGGACAAGTATCCTAATGGGCTTTCTTTGGTTGATTTGCTGCCATTTTACGACTCCATATCTAAGAATGAACCGCTTAAATTAGAATGGGTTTGTCCAGGGAAAATCGATCCT-AACGTTCAGAGGGAAA-GTGAGTTTGATTCAAAGTTAGGAAATAATTTGTTCTATGGTACTTACCCCTAAATAAAT]
[+] EMBL CD080694 [TCGGCACGAGGGTTAAATATTCTGAGAATCACTCAGAATTATTTGATGAGTCGACTGGTTTTTCTTATGATCCTATGAGTCCTTTGGTTAAATGCTCTTATCTTCCTCGTCATTCCATTTGGTGTGAACCTCCCTTAGATTTAAGAAGTAATAAGTCCCAATATGATGAATTGAAATACGGATGCTTAAAATGGGGCGGAAAAGCAGCAGATTCAGTTGTGCTCACATCAATTGTGTGTCATGCTTTGGACAATATTGAGTGCTATGGGAATCGTACTTTCTTGTTACCTGATTATCCCTGTCTTCATTACAAAGGACATTACTTTGTAACAACATTCATATACAGCTTATTACTAGGATTTCTTGGTGTTGATCGACTATGTCTGGGTCATACAGGTACAGGCCTCGGTAAACTCCTAACATTGGGTGGGGCCGGTATTTGGTGGATAGTGGATATCGTTCTTCTCATTCGTGGTGATTTGGGTCCAGCTGATGGAAGTTCCTGGATGCCATTTTACTAGACTTATGTATTGGCTGGTCTAAAAATCACATACAGTATTAATTTGAATGTCGGGAAGTAATTTTCGTCTGCTTGATGATGACACTCAGTTCATGGACAAGTATCCTAATGGGCTNTCTTTGGTTGATTTGCTGCCATTNTACGACTCCATATCTAAGAATGAACCGCTTAAATTAGAATGGGNTTGTCCAGGGAAAATCGATCCTAAACG TCAGAGGGAAANGTGAG TTGATTTCAAG TANGAAAT ATTNNGTCTATGGTACTTA CCCTAANTAAn ]
[+] EMBL CD080636 [ GTTAAATATTCTGAGAATCACTCAGAATTATTTGATGAGTCGACTGGTTTTTCTTATGATCCTATGAGTCCTTTGGTTAAATGCTCTTATCTTCCTCGTCATTCCATTTGGTGTGAACCTCCCTTAGATTTAAGAAGTAATAAGTCCCAATATGATGAATTGAAATACGGATGCTTAAAATGGGGCGGAAAAGCAGCAGATTCAGTTGTGCTCACATCAATTGTGTGTCATGCTTTGGACAATATTGAGTGCTATGGGAATCGTACTTTCTTGTTACCTGATTATCCCTGTCTTCATTACAAAGGACATTACTTTGTAACAACATTCATATACAGCTTATTACTAGGATTTCTTGGTGTTGATCGACTATGTCTGGGTCATACAGGTACAGGCCTCGGTAAACTCCTAACATTGGGTGGGGCCGGTATTTGGTGGATAGTGGATATCGTTCTTCTCATTCGTGGTGATTTGGGTCCAGCTGATGGAAGTTCCTGGATGCCATTTTACTAGACTTATGTATTGGCTGGTCTAAAAATCACATACAGTATTAATTTGAATGTCGGGAAGTAATTTTCGTCTGCTTGATGATGACACTCAGTTCATGGACAAGTATCCTAATGGGCTNTCTTTGGTTGATTTGCTGCCATTNTACGACTCCATATCTAAGAATGAACCGCTTNAATTAGAATGGGTTTGTCCAGGGAAAATCGATCCC TACGTTCAGAGGGAAA GTGAGTTTGATTC AAGTTAGGAAATAA TTGTTCTAT GTACTTACCCNTAAta ]
[-] EMBL CD074547 [ TTAGATTTAAGAAGTAATAAGTCCCAATATGATGAATTGAAATACGGATGCTTAAAATGGGGCGGAAAAGCAGCAGATTCAGTTGTGCTCACATCAATTGTGTGTCATGCTTTGGACAATATTGAGTGCTATGGGAATCGTACTTTCTTGTTACCTGATTATCCCTGTCTTCATTACAAAGGACATTACTTTGTAACAACATTCATATACAGCTTATTACTAGGATTTCTTGGTGTTGATCGACTATGTCTGGGTCATACAGGTACAGGCCTCGGTAAACTCCTAACATTGGGTGGGGCCGGTATTTGGTGGATAGTGGATATCGTTCTTCTCATTCGTGGTGATTTGGGTCCAGCTGATGGAAGTTCCTGGATGCCATTTTACTAGACTTATGTATTGGCTGGTCTAAAAATCACATACAGTATTAATTTGAATGTCGGGAAGTAATTTTCGTCTGCTTGATGATGACACTCAGTTCATGGACAAGTATCCTAATGGGCTTTCTTTGGTTGATTTGCTGCCATTTTACGACTCCATATCTAAGAATGAACCGCTTAAATTAGAATGGGTTTGTCCAGGGAAAATCGATCCT AACGTTCAGAGGGAAA GTGAGTTTGATTCAAAGTTAGGAAATAATTTGTTGTATGGTACTTACCCCTAAATAAAT]
[-] EMBL CD074536 [ TTTAAGAAGTAATAAGTCCCAATATGATGAATTGAAATACGGATGCTTAAAATGGGGCGGAAAAGCAGCAGATTCAGTTGTGCTCACATCAATTGTGTGTCATGCTTTGGACAATATTGAGTGCTATGGGAATCGTACTTTCTTGTTACCTGATTATCCCTGTCTTCATTACAAAGGACATTACTTTGTAACAACATTCATATACAGCTTATTACTAGGATTTCTTGGTGTTGATCGACTATGTCTGGGTCATACAGGTACAGGCCTCGGTAAACTCCTAACATTGGGTGGGGCCGGTATTTGGTGGATAGTGGATATCGTTCTTCTCATTCGTGGTGATTTGGGTCCAGCTGATGGAAGTTCCTGGATGCCATTTTACTAGACTTATGTATTGGCTGGTCTAAAAATCACATACAGTATTAATTTGAATGTCGGGAAGTAATTTTCGTCTGCTTGATGATGACACTCAGTTCATGGACAAGTATCCTAATGGGCTTTCTTTGGTTGATTTGCTGCCATTTTACGACTCCATATTTAAGAATGAACCGCTTAAATTAGAATGGGTTTGTCCAGGGAAAATCGATCCT AACGTTCAGAGGGAAA GTGAGTTTGATTCAAAGTTAGGAAATAATTTGTTGTATGGTACTTACCCCTAAATAAAT]
[-] EMBL CD074618 [ ATAAGTCCCAATATGATGAATTGAAATACGGATGCTTAAAATGGGGCGGAAAAGCAGCAGATTCAGTTGTGCTCACATCAATTGTGTGTCATGCTTTGGACAATATTGAGTGCTATGGGAATCGTACTTTCTTGTTACCTGATTATCCCTGTCTTCATTACAAAGGACATTACTTTGTAACAACATTCATATACAGCTTATTACTAGGATTTCTTGGTGTTGATCGACTATGTCTGGGTCATACAGGTACAGGCCTCGGTAAACTCCTAACATTGGGTGGGGCCGGTATTTGGTGGATAGTGGATATCGTTCTTCTCATTCGTGGTGATTTGGGTCCAGCTGATGGAAGTTCCTGGATGCCATTTTACTAGACTTATGTATTGGCTGGTCTAAAAATCACATACAGTATTAATTTGAATGTCGGGAAGTAATTTTCGTCTGCTTGATGATGACACTCAGTTCATGGACAAGTATCCTAATGGGCTTTCTTTGGTTGATTTGCTGCCATTTTACGACTCCATATCTAAGAATGAACCGCTTAAATTAGAATGGGTTTGTCCAGGGAAAATCGATCCT AACGTTCAGAGGGAAA GTGAGTTTGATTCAAAGTTAGGAAATAATTTGTTCGATGGTACTTACCCCTAAAAAAAT]
[+] EMBL CD182960 [ GAATTGAAATACGGATGCTTAAAATGGGGCGGAAAAGCAGCAGATTCAGTTGTGCTCACATCAATTGTGTGTCATGCTTTGGACAATATTGAGTGCTATGGGAATCGTACTTTCTTGTTACCTGATTATCCCTGTCTTCATTACAAAGGACATTACTTTGTAACAACATTCATATACAGCTTATTACTAGGATTTCTTGGTGTTGATCGACTATGTCTGGGTCATACAGG ]
consensusID : consensus_10565#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 739 fasta sequence
[ANACTCTTGGCTCGAGGACTTCATGGACAAGTATCCTAATGGGCTTTCTTTGGTTGATTTGCTGCCATTTTACGACTCCATATCTAAGAATGAACCGCTTAAATTAGAATGGGTTTGTCCAGGGAAAATCGATCCTAACGTTCAGAGGGAAACAACCAAAATTCGTACTGAAACAAATGATAATCCTGTCCCAAAGGTTTCTGAATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTCGACTTCGATGAGTCTCCGAATCAACCATCTATTCCTTCAGTTCCACTTGGTGCTGCTGCTCAAAATGCAAACTTACCACTTAGACGTCTAGCAGGCACTTCCAGACATCCACCTCGCCAACCCCGTGTAGCTAGTATGGATAAAATATTAAATGACTTTTTCAAAACACGCAAAGAACCTTCTTCCCCTGCAGTTGTGACTGAAATACCCACTTCATCTATTACTGCACATTGTATTCCATCGTCTGGAATTTCTCAGGCAACTAATATTTCCAATGACACAAACAAAAGCAATAATAATAATAACTCCGAACAAGATAAACGAGAAGCCCTTGCTGTTGAACTAGCTATAGCTTCAGTGTCACCACAAGTTTATAATCATCCAGATAATATACCTTCAGACTTCACGCTACACGACAATTCTAATGTACGAATTACCTCAAGTGATCANGTTTCTGCTCCTGTTGTAAACATTTGTGATGAAAGAATAATGGAATGTCAT]
[+] EMBL CD080701 [ANACTCTTGGCTCGAGGACTTCATGGACAAGTATCCTAATGGGCTTTCTTTGGTTGATTTGCTGCCATTTTACGACTCCATATCTAAGAATGAACCGCTTAAATTAGAATGGGTTTGTCCAGGGAAAATCGATCCTAACGTTCAGAGGGAAACAACCAAAATTCGTACTGAAACAAATGATAATCCTGTCCCAAAGGTTTCTGAATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTCGACTTCGATGAGTCTCCGAATCAACCATCTATTCCTTCAGTTCCACTTGGTGCTGCTGCTCAAAATGCAAACTTACCACTTAGACGTCTAGCAGGCACTTCCAGACATCCACCTCGCCAACCCCGTGTAGCTAGTATGGATAAAATATTAAATGACTTTTTCAAAACACGCAAAGAACCTTCTTCCCCTGCAGTTGTGACTGAAATACCCACTTCATCTATTACTGCACATTGTATTCCATCGTCTGGAATTTCTCAGGCAACTAATATTTCCAATGACACAAACAAAAGCAATAATAATAATAACTCCGAACAAGATAAACGAGAAGCCCTTGCTGTTGAACTAGCTATAGCTTCAGTGTCACCACAAGTTTATAATCATCCAGATAATATACCTTCAGACTTCACGCTACACGACAATTCTAATGTACGAATTACCTCAAGTGATCANGTTTCTGCTCCTGTTGTAAACATTTGTGATGAAAGAATAATGGAATGTCAT]
[+] EMBL CD189621 [ GCTGCCATTTTACGACTCCATATCTAAGAATGAACCGCTTAAATTAGAATGGGTTTGTCCAGGGAAAATCGATCCTAACGTTCAGAGGGAAACAACCAAAATTCGTACTGAAACAAATGATAATCCTGTCCCAAAGGTTTCTGAATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTCGACTTCGATGAGTCTCCGAATCAACCATCTATTCCTTCAGTTCCACTTGGTGCTGCTGCTCAAAATGCAAACTTACCACTT ]
[-] EMBL CD124874 [ CCGCTTAAATTAGAATGGGTTTGTCCAGGGAAAATCGATCCTAACGTTCAGAGGGAAACAACCAAAATTCGTACTGAAACAAATGATAATCCTGTCCCAAAGGTTTCTGAATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTCGACTTCGATGAGTCTCCGAATCAACCATCTATTCCTTCAGTTCCACTTGGTGCTGCTGCTCAAAATGCAAACTTACCACTTAGACGTCTAGCAGGCACTTCCAGACATCCACCTCGCCAACCCCGTGTAGCTAGTATGGATAAAATATTAAATGACTTTTTCAAAACACGCAAAGAACCTTCTTCCCCTGCAGTTGTGTCTGAAATACCCACTTCATCTATTACTGCACATTGTATTCCATCGTCTGGAATTTCTCAGGCAACTAATATTTCCAATGACACAAACAAAAGCAATAATAATAATAACTCCGAACAAGATAAACGAGTAGCCCTTGCTGTTGAACTAGCTAAAGCTTCAGTGTCACCACAAG ]
consensusID : consensus_10565#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[TATATGAGCATTTTATTTAGTTGAAAAAAGACCTATTNTGCTGAGCAATTAACTATGTTGTCTGATGTCAGTCCAATTGGGGAATCACATCAATAATTTGTTCTCGTGAGTAGTAATCACACGATCACCTCGGATGATTGCATACCACCTATTGACTAGCATTGGATTCATTCACTTAGTGCAAACGCCCGTTCAGAAAAACCTTATAATGCGAACTGATAAAACCATTGATACTTCTTGTTAGCTACAATTACGATCCATTTGTAAGTCGTCACTATTCTATTTTACTCTCCTCAATTCTTTTGTGGTTAACTGTAGATATTCAATATTCCTTTTTCTTCATTTTCTTAAAAAAATTTTATAGCAACCAAAATTCGTACTGAAACAAATGATAATCCTGTCCCAAAGGTTTCTGAATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTCGACTTCGATGAGTCTCCGAATCAACCATCTATTCCTTCAGTTCCACTTGGTGCTGCTGCTCAAAATGCAAACTTACCACTTAGACGTCTAGCAGGCACTTCCAGACATCCACCTCGCCAACCCCGTGTAGCTAGTATGGATAAAATATTAAATGACTTTTTCAAAACAC]
[-] EMBL CD085474 [TATATGAGCATTTTATTTAGTTGAAAAAAGACCTATTNTGCTGAGCAATTAACTATGTTGTCTGATGTCAGTCCAATTGGGGAATCACATCAATAATTTGTTCTCGTGAGTAGTAATCACACGATCACCTCGGATGATTGCATACCACCTATTGACTAGCATTGGATTCATTCACTTAGTGCAAACGCCCGTTCAGAAAAACCTTATAATGCGAACTGATAAAACCATTGATACTTCTTGTTAGCTACAATTACGATCCATTTGTAAGTCGTCACTATTCTATTTTACTCTCCTCAATTCTTTTGTGGTTAACTGTAGATATTCAATATTCCTTTTTCTTCATTTTCTTAAAAAAATTTTATAGCAACCAAAATTCGTACTGAAACAAATGATAATCCTGTCCCAAAGGTTTCTGAATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTCGACTTCGATGAGTCTCCGAATCAACCATCTATTCCTTCAGTTCCACTTGGTGCTGCTGCTCAAAATGCAAACTTACCACTTAGACGTCTAGCAGGCACTTCCAGACATCCACCTCGCCAACCCCGTGTAGCTAGTATGGATAAAATATTAAATGACTTTTTCAAAACAC]
consensusID : consensus_10565#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence
[GGACATTACTTTGTAACAACATTCATATACAGCTTATTACTAGGATTTCTTGGTGTTGATCGACTATGTCTGGGTCATACAGGTACAGGCCTCGGTAAACTCCTAACATTGGGTGGGGCCGGTATTTGGTGGATAGTGGATATCGTTCTTCTCATTCGTGGTGATTTGGGTCCAGCTGATGGAAGTTCCTGGATGCCATTTTACTAGACTTATGTAAAATTGCTCATTAAAAAACTTAATTCCTACTGTCTTGCTTTGTTTTAAGGTATTG]
[+] EMBL CD180131 [GGACATTACTTTGTAACAACATTCATATACAGCTTATTACTAGGATTTCTTGGTGTTGATCGACTATGTCTGGGTCATACAGGTACAGGCCTCGGTAAACTCCTAACATTGGGTGGGGCCGGTATTTGGTGGATAGTGGATATCGTTCTTCTCATTCGTGGTGATTTGGGTCCAGCTGATGGAAGTTCCTGGATGCCATTTTACTAGACTTATGTAAAATTGCTCATTAAAAAACTTAATTCCTACTGTCTTGCTTTGTTTTAAGGTATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10565#0 ------------------------------------------------------------
consensus_10565#2 ------------------------------------------------------------
consensus_10565#3 TATATGAGCATTTTATTTAGTTGAAAAAAGACCTATTNTGCTGAGCAATTAACTATGTTG 60
consensus_10565#1 ------------------------------------------------------TCGGCA 6
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 ------------------------------------------------------------
consensus_10565#2 ------------------------------------------------------------
consensus_10565#3 TCTGATGTCAGTCCAATTGGGGAATCACATCAATAATTTGTTCTCGTGAGTAGTAATCAC 120
consensus_10565#1 CGAGGGTTAAATATTCTGAGAATCACTCAGAATTATTTGATGAGTCGACTGGTTTTTCTT 66
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 ---ATGGTATTGGCTGGTCTAAAAATCACATACAGTATTAATTTGAATGTCGGGAAGTAA 57
consensus_10565#2 -----------------------------------------------------------A 1
consensus_10565#3 ACGATCACCTCGGATGAT-TGCATACCACCTATTGACTAGCATTGGATTCATTCACTTAG 179
consensus_10565#1 ATGATCCTATGAGTCCTTTGGTTAAATGCTCTTATCTTCCTCGTCATTCCATTTGGTGTG 126
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 TTTT--CGTCTGCTTGATGATGACACTCAGTTC------ATGGACAAGTATCCTAATGGG 109
consensus_10565#2 NACT--C-TTGGCTCGAGGAC---------TTC------ATGGACAAGTATCCTAATGGG 43
consensus_10565#3 TGCAAACGCCCGTTCAGAAAAACCTTATAATGCGA----ACTGATAAAACCATTGATACT 235
consensus_10565#1 AACCTCCCTTAGATTTAAGAAGTAATAAGTCCCAATATGATGAATTGAAATACGGATGCT 186
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 CTTTCTTTGGTTGATTTGCTGCCATTTTACGACTC--CATATCTAAGAATGAACCGCTTA 167
consensus_10565#2 CTTTCTTTGGTTGATTTGCTGCCATTTTACGACTC--CATATCTAAGAATGAACCGCTTA 101
consensus_10565#3 TCTTGTTAGCTACAATTACGATCCATTTGTAAGTCGTCACTATTCTATTTTACTCTCCTC 295
consensus_10565#1 TAAAATGGGGCGGAAAAGCAGCAGATTCAGTTGTGCTCACATCAATTGTGTGTCATGCTT 246
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 AATTAGAATGGGTTTGTCCAGGCAAAATCGAT----------CCTAACGTTCAGAGGGAA 217
consensus_10565#2 AATTAGAATGGGTTTGTCCAGGGAAAATCGAT----------CCTAACGTTCAGAGGGAA 151
consensus_10565#3 AATTCTTTTGTGGTTAACTGTAGATATTCAATATTCCTTTTTCTTCATTTTCTTAAAAAA 355
consensus_10565#1 TGGACAATATTGAGTG-CTATGGGAATCGTACTTTCTTGTTACCTGATTATCCCTGTCTT 305
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 A--------CAACCAAAATTCGTACTGAAACAAATGATAATCCTGTCCCAAAGGTTTCTG 269
consensus_10565#2 A--------CAACCAAAATTCGTACTGAAACAAATGATAATCCTGTCCCAAAGGTTTCTG 203
consensus_10565#3 ATTTTATAGCAACCAAAATTCGTACTGAAACAAATGATAATCCTGTCCCAAAGGTTTCTG 415
consensus_10565#1 CATTACAAAGGACATTACTTTGTAACAACATTCATATACAGCTTATTACTAGGATTTCTT 365
consensus_10565#4 ---------GGACATTACTTTGTAACAACATTCATATACAGCTTATTACTAGGATTTCTT 51
** * ** *** * * ** * * * * * * * *****
consensus_10565#0 AATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTC-GACTTCGATGAGTCTCCGA-ATCA 327
consensus_10565#2 AATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTC-GACTTCGATGAGTCTCCGA-ATCA 261
consensus_10565#3 AATCCTTGACTAGTATTGTAAAGTTAAAAGAGTTC-GACTTCGATGAGTCTCCGA-ATCA 473
consensus_10565#1 GGTGTTGATCGACTATGTCTGGGTCATACAGGTACAGGCCTCGGTAAACTCCTAACATTG 425
consensus_10565#4 GGTGTTGATCGACTATGTCTGGGTCATACAGGTACAGGCCTCGGTAAACTCCTAACATTG 111
* * * * *** ** * * ** * * * *** * * * * **
consensus_10565#0 ACCAT--CTATTCCTTCAGTTCCACTTGGTGCTGCTGCTCAAAATGCAAACTTACCACTT 385
consensus_10565#2 ACCAT--CTATTCCTTCAGTTCCACTTGGTGCTGCTGCTCAAAATGCAAACTTACCACTT 319
consensus_10565#3 ACCAT--CTATTCCTTCAGTTCCACTTGGTGCTGCTGCTCAAAATGCAAACTTACCACTT 531
consensus_10565#1 GGTGGGGCCGGTATTTGGTGGATAGTGGATATCGTTCTTCTCATTC----GTGGTGATTT 481
consensus_10565#4 GGTGGGGCCGGTATTTGGTGGATAGTGGATATCGTTCTTCTCATTC----GTGGTGATTT 167
* * ** * * * * * * ** * * * * **
consensus_10565#0 AGA--CGTCTAGCAGGCACTTCCAGACATCCACCTCGCCAACCCCGTGTAGCTAGTATGG 443
consensus_10565#2 AGA--CGTCTAGCAGGCACTTCCAGACATCCACCTCGCCAACCCCGTGTAGCTAGTATGG 377
consensus_10565#3 AGA--CGTCTAGCAGGCACTTCCAGACATCCACCTCGCCAACCCCGTGTAGCTAGTATGG 589
consensus_10565#1 GGGTCCAGCTGATGGAAGTTCCTGGATG-CCATTTTACTAGACTTATGTAT--TGGCTGG 538
consensus_10565#4 GGGTCCAGCTGATGGAAGTTCCTGGATG-CCATTTTACTAGACTTATGTAAAATTGCTCA 226
* * ** * * * ** *** * * * * **** *
consensus_10565#0 ATAAAATATTAAATGACTTTTTCAAAACACGCAAAGAACCTTCTTCCCCTGCAGTTGTGA 503
consensus_10565#2 ATAAAATATTAAATGACTTTTTCAAAACACGCAAAGAACCTTCTTCCCCTGCAGTTGTGA 437
consensus_10565#3 ATAAAATATTAAATGACTTTTTCAAAACAC------------------------------ 619
consensus_10565#1 TCTAAAAATCACAT-ACAGTATTAATTTGAAT-GTCGGGAAGTAATTTTCGTCTGCTTGA 596
consensus_10565#4 TTAAAAAACTTAAT-TCC-TACTGTCTTGCTTTGTTTTAAGGTATTG------------- 271
*** * ** * *
consensus_10565#0 CTGAAATACCCACTTCATCTATTACTGCACATTGTATTCCATCGTCTGGAATTTCTCAGG 563
consensus_10565#2 CTGAAATACCCACTTCATCTATTACTGCACATTGTATTCCATCGTCTGGAATTTCTCAGG 497
consensus_10565#3 ------------------------------------------------------------
consensus_10565#1 TGATGACACTCAGTTCATGGACAAGTATCCTAATGGGCTTTCTTTGGTTGATTTGCTGCC 656
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 CAACTAATATTTCCAATGACACAAACAAAAGCAATAATAATAATAACTCCGAACAAGATA 623
consensus_10565#2 CAACTAATATTTCCAATGACACAAACAAAAGCAATAATAATAATAACTCCGAACAAGATA 557
consensus_10565#3 ------------------------------------------------------------
consensus_10565#1 ATTTTACGACTCCATATCTAAGAATGAACCGCTTAAATTAGAATGGGTTTGTCCAGGGAA 716
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 AACGAGAAGCCCTTGCTGTTGAACTAGCTAAAGCTTCAGTGTCACCACAAGTTTATAATC 683
consensus_10565#2 AACGAGAAGCCCTTGCTGTTGAACTAGCTATAGCTTCAGTGTCACCACAAGTTTATAATC 617
consensus_10565#3 ------------------------------------------------------------
consensus_10565#1 AATCGATCCTAACGTTCAGAGGGAAAGTGAGTTTGATTCAAAGTTAGGAAATAATTTGTT 776
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 ATCCAGATAATATACCTTCAGACTTCACGCTACACGACAATTCTAATGTACGAATTACCT 743
consensus_10565#2 ATCCAGATAATATACCTTCAGACTTCACGCTACACGACAATTCTAATGTACGAATTACCT 677
consensus_10565#3 ------------------------------------------------------------
consensus_10565#1 CTATGGTACTTACCCCTAAATAAAT----------------------------------- 801
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 CAAGTGATCAGGTTTCTGCTCCTGTTGTAAACATTTGTGATGAAAGAATAATGGAATGTC 803
consensus_10565#2 CAAGTGATCANGTTTCTGCTCCTGTTGTAAACATTTGTGATGAAAGAATAATGGAATGTC 737
consensus_10565#3 ------------------------------------------------------------
consensus_10565#1 ------------------------------------------------------------
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 ATAAATTAGAAGGTACTGATCTTTATGTCAATAACGCTAATTCTTCCGATTACTCTGCTA 863
consensus_10565#2 AT---------------------------------------------------------- 739
consensus_10565#3 ------------------------------------------------------------
consensus_10565#1 ------------------------------------------------------------
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 TAAATGTTTCAGACATCTCAGTCACTTCTGTTAGTGTAAATAATATGTTCCAAAGTGAGA 923
consensus_10565#2 ------------------------------------------------------------
consensus_10565#3 ------------------------------------------------------------
consensus_10565#1 ------------------------------------------------------------
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 ATGAGACGCCACATTAAGGCTACTTAATAGTTGTGGTGTAAATTTTCAGTTAATAGAATA 983
consensus_10565#2 ------------------------------------------------------------
consensus_10565#3 ------------------------------------------------------------
consensus_10565#1 ------------------------------------------------------------
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 TATTCCCAAACTCTGCTAACTAAATAATCGCATTTTTGTGAAATATTTATCCAACGGAAA 1043
consensus_10565#2 ------------------------------------------------------------
consensus_10565#3 ------------------------------------------------------------
consensus_10565#1 ------------------------------------------------------------
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 TACAAATGCGTAACTGTACATAAAAATTTTGTACACTGGGTACGTTTTATGTAATTTTTT 1103
consensus_10565#2 ------------------------------------------------------------
consensus_10565#3 ------------------------------------------------------------
consensus_10565#1 ------------------------------------------------------------
consensus_10565#4 ------------------------------------------------------------
consensus_10565#0 TCCTGTTATCTAAATAAATAATTGA 1128
consensus_10565#2 -------------------------
consensus_10565#3 -------------------------
consensus_10565#1 -------------------------
consensus_10565#4 -------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||