These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 895 fasta sequence [TTTCTTACTAGGACAGAGTATGATCGTGGAGTTAATACGTTTTCCCCCGAGGGACGACTCTTCCAAGTAGAATACGCCATAGAAGCTACAAAGCTGGGTTCAACGGGAATCGGGATCAAGACAAGTGAGGGTGTTGTTATGGCTGTAGAAAAACGGGTAAACTCAACTTTAATCATACCATCCAGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT-ACAATG-AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG-AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATAAAAATATGACATTA-CAT-GAAGGTTGTAAACATGC-TTTATCAATTTTAAAACAAGTTAT-GGAAGAAAAAC-TTGATTCAACTAATGTAGAAATGGCAACTGTTAGTATTAAAGATAATTATCATTTATTCAATAAAGATGAAGTA-CAAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATT-TTTCC-ATGAAACCATCCTTCTTCNTCTTCCNCTTTGTTTGTTTAAACGAATTGTTTGTATTTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC] [+] EMBL SMT14568 [TTTCTTACTAGGACAGAGTATGATCGTGGAGTTAATACGTTTTCCCCCGAGGGACGACTCTTCCAAGTAGAATACGCCATAGAAGCTACAAAGCTGGGTTCAACGGGAATCGGGATCAAGACAAGTGAGGGTGTTGTTATGGCTGTAGAAAAACGGGTAAACTCAACTTTAATCATACCATCCAGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGANCCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAA ] [-] EMBL CD187576 [ CAAGACAAGTGAGGGTGTTGTTATGGCTGTAGAAAAACGGGTAAACTCAACTTTAATCATACCATCCAGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGA ] [+] EMBL CD150041 [ gccCATGTGAGGGTGTTGTTATGGCTGTAGAAAAACGGGTAAACTCAACTTTAATCATACCATCCAGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGTTGATGCAAGAACCCACATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTT ] [-] EMBL CD064069 [ AGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGT ] [+] EMBL CD126773 [ CATTG AAAGATTTTTGAGGTGGATAAGCACATAGCA GTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATGAAAGCTAAAG ] [+] EMBL CD145563 [ TTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGTNACAATG AAAAAATGACTATTAAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAG ] [+] EMBL CD145588 [ TTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAG ] [+] EMBL CD145558 [ TTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAG ] [+] EMBL CD202177 [ TTGAGGCGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTCGCTGGAGTTGATGAACGTGGACCACAGTTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAG ] [-] EMBL CD202538 [ TGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATA ] [-] EMBL CD145429 [ TGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATGAAAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTCGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTAGTTCTGGTAGT ] [+] EMBL CD129913 [ GGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATAAAAATATGACATTA CAT GAAGGTTGTAAACATGC TTTATCAATTTTAAAACAAGTTAT GGAAGAAAAAC TTGATTCAACTAATGTAGAAATGGCAACTGTTAGTATTAAAGATAATTATCATTTATTCAATAAAGATGAAGTA CAAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATT TTTCC ATGAAA ] [-] EMBL CD129867 [ GGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATAAAAATATGACATTA CAT GAAGGTTGTAAACATGC TTTATCAATTTTAAAACAAGTTAT GGAAGAAAAAC TTGATTCAACTAATGTAGAAATGGCAACTGTTAGTATTAAAGATAATTATCATTTATTCAATAAAGATGAAGTA CATAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATT TTTCC ATGAAAC ] [-] EMBL CD155994 [ GTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCCAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATAAAAATATGACATTA CAT GAAGGTTGTAAACATGC TTTATCAATTTTAAAACAAGTTAT GGAAGAAAAAC TTGAT ] [+] EMBL AW146496 [ TTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATAAAAATATGACATTA CATGGAGGGTTGTAAACATGC TTTATCAATTTTAAAACAAGTTATGGGAAGAAAAACTTTGATTCAACTAATGTAGAAATGGC ACTGTTAGTATTAAAGATAATTATCATTTATTCAATAAAGATG AGTA CAAAAAAT ATTG AGGAATT ATCCACCCTCATCTCGAATCG CTTTCTGAACAACA CTA TATAG ACTT ] [-] EMBL CD140575 [ AAAAATATGACATGA CAT GAAGGTTGTAAACATGCGTTTATCAATTTTAAAACAAGTTAT GGAAGAAAAAC TTGATTCAACTAATGTAGGAATGGCAACTGTTAGTATTAAAGATAATTATCATTTATTCAATAAAGATGAAGTACCAAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTAATATAGTACTTATATATTATCTCCAATGGAACCATCCTTC ] [-] EMBL SMT14567 [ AAATATGACATTACCAT GAAGGTTGTAAACATGC TTTATCAATTTTAAAACNAGTTAT GGAAGAAAAAC NTGATTCAACTAATGTAGNAATGGCNACTGTTAGTATTAAAGANAATTANCATTTANTCAATAAAGATGAAGTA CNAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAANCGATTTTCTGAACCACATCTATTATAGNACTTATATATT TTTCC ATGAAACCATCCNTCTTCNTCTTCCNCTTTGTTTGTTTAAACGAATTGTTTGTATTTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC] consensusID : consensus_10568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [CATTACATGGAAGGTTGTAAACATGCTTTATCAATTTTAAAACAAGTTATGGAAGAAAAACTTGATTCAACTAATGTAGAAATGAAGTACCAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATTTTTCCATGAAACCATCCTTCTTCTTCTTCCTCTTTGTTTGTTTAAACGAATTGTTTGTATTTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC] [-] EMBL AA999395 [CATTACATGGAAGGTTGTAAACATGCTTTATCAATTTTAAAACAAGTTATGGAAGAAAAACTTGATTCAACTAATGTAGAAATGAAGTACCAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATTTTTCCATGAAACCATCCTTCTTCTTCTTCCTCTTTGTTTGTTTAAACGAATTGTTTGTATTTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10568#0 TTTCTTACTAGGACAGAGTATGATCGTGGAGTTAATACGTTTTCCCCCGAGGGACGACTC 60 consensus_10568#1 ------------------------------------------------------------ consensus_10568#0 TTCCAAGTAGAATACGCCATAGAAGCTACAAAGCTGGGTTCAACGGGAATCGGGATCAAG 120 consensus_10568#1 ------------------------------------------------------------ consensus_10568#0 ACAAGTGAGGGTGTTGTTATGGCTGTAGAAAAACGGGTAAACTCAACTTTAATCATACCA 180 consensus_10568#1 ------------------------------------------------------------ consensus_10568#0 TCCAGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTT 240 consensus_10568#1 ------------------------------------------------------------ consensus_10568#0 GTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTT 300 consensus_10568#1 ------------------------------------------------------------ consensus_10568#0 GTGTACAATGAAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTA 360 consensus_10568#1 ------------------------------------------------------------ consensus_10568#0 GCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTA 420 consensus_10568#1 ------------------------------------------------------------ consensus_10568#0 TTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACA 480 consensus_10568#1 ------------------------------------------------------------ consensus_10568#0 TATATTCGTTATGAAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTA 540 consensus_10568#1 ------------------------------------------------------------ consensus_10568#0 CAAGAAATATATCATAAAAATATGACATTACATG-AAGGTTGTAAACATGCTTTATCAAT 599 consensus_10568#1 -------------------------CATTACATGGAAGGTTGTAAACATGCTTTATCAAT 35 ********* ************************* consensus_10568#0 TTTAAAACAAGTTATGGAAGAAAAACTTGATTCAACTAATGTAGAAATGGCAACTGTTAG 659 consensus_10568#1 TTTAAAACAAGTTATGGAAGAAAAACTTGATTCAACTAATGTAGAAATG----------- 84 ************************************************* consensus_10568#0 TATTAAAGATAATTATCATTTATTCAATAAAGATGAAGTACAAAAAATAATTGAAGAAAT 719 consensus_10568#1 -----------------------------------AAGTACCAAAAATAATTGAAGAAAT 109 ****** ****************** consensus_10568#0 TAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATT 779 consensus_10568#1 TAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATT 169 ************************************************************ consensus_10568#0 TTTCCATGAAACCATCCTTCTTCNTCTTCCNCTTTGTTTGTTTAAACGAATTGTTTGTAT 839 consensus_10568#1 TTTCCATGAAACCATCCTTCTTCTTCTTCCTCTTTGTTTGTTTAAACGAATTGTTTGTAT 229 *********************** ****** ***************************** consensus_10568#0 TTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC 895 consensus_10568#1 TTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC 285 ******************************************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||