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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1299 fasta sequence
[TCAAATTTATTGAGACTCCTACAATGAAAACTCAATTGGATAAATCAACAAGAAACAAATATAATATGTAATGAAAGAAAAAAATGAAAAAAGCAGAGTGAATGAGAGAACGACGGATTTTTTTATTTTTAAAAAAA-GAGAGAACAAACTGATGGATGGTTACGGGTGCG--AAAAAAAAAGAA-CG-ATCAGTAATTTCTCATCTCGTGTGTGTGTGTGCGCGTATGTGAGCCTCTATTACAACCACACACACATACATATATATTACTATTATGGCTAACAATTAATATCATTTTTGTGTAATAATAATAATACTTTATTAATAAAAAAAATCACGTAATTTCGAATTAAATGTAGGGGGGGAGAGGGGCGGTGCCGGGGAAATAGATGAAAC-AAAGAATAAACCATCAATGACAATAATACCAACATATTAACAACAACAACTGAAAAAAATGGGCAAGAAACAAAAAAAATCAATCAGTTAGAGTAGTCTTAGAAACTATTGATCTAATTCTTTAAAAAAAAGGAGGGGAAATAACCTAGTTACTTAACTAACACTATATATACATATATATGCTATCATGGAAATGAAAAATTCCTCAAACTTGCTCTTATCCACTGCATATATACGTAGAACTAAGGGAGAAAAGACAAAATATCTAAATAACAAATACACACACATACACTCTATCAAGATCTAGTTTTATTGAGAATCTAAACATACAAGAATTGATCTATTGTATAATCTTTCTTGTTTCGAAACAAGAACATATCTAAAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATAACAACAAAAGAATTACCATGAACTAACTATTCAAATCATTGGAATAATCATCATAATAGAACAAAGATATTAATATGGAATTAGAGTATTGTTTGTTTAAATGAGAAGGTTTTGGTTAAAACAAAACTGAATATTCTATTACGTAATCATTAAAAAAAGAGAAACAGAGATAGGATAGGAAGAGAGACAGAGCGAGGGAGAGAAAGAGGAACAATACAAAACAATAAAGATATGAATAACAACAAGATAATAGGATTATATACTACAAAATGAATGAATGATTAGTGACATCTATTTTTGTAGATGTAATATGGCATTAAATCATATAGAATATGATCCTGTATACA-CTATTTTAATTATGATAATCATAATAGATTCTATTCATAATGATT--ATAG-TGATTGTATGAA-TCAACTGAATACACAATGATAATATACGTGTATGTATATGTGT-GTGAGGGGGTGAGAGAA]
[+] EMBL CD076160 [TCAAATTTATTGAGACTCCTACAATGAAAACTCAATTGGATAAATCAACAAGAAACAAATATAATATGTAATGAAAGAAAAAAATGAAAAAAGCAGAGTGAATGAGAGAACGACGGATTTTTTTATTTTTAAAAAAA GAGAGAACAAACTGATGGATGGTTACGGGTGCG AAAAAAAAAGAA CG ATCAGTAATTTCTCATCTCGTGTGTGTGTGTGCGCGTATGTGAGCCTCTATTACAACCACACACACATACATATATATTACTATTATGGCTAACAATTAATATCATTTTTGTGTAATAATAATAATACTTTATTAATAAAAAAAATCACGTAATTTCGAATTAAATGTAGGGGGGGAGAGGGGCGGTGCCGGGGAAATAGATGAAAC AAAGAATAAACCATCAATGACAATAATACCAACATATTAACAACAACAACTGAAAAAAATGGGCAAGAAACAAAAAAAATCAATCAGTTAGAGTAGTCTTAGAAACTATTGATCTAATTCTTTAAAAAAAAGGAGGGGAAATAACCTAGTTACTTAACTAACACTATATATACATATATATGCTATCATGGAAATGAAAAATTCCTCAAACTTGCTCTTATCCACTGCATATATAC ]
[+] EMBL AI740401 [TCAAATTTATTGAGACTCCTACAATGAAAACTCAATTGGATAAATCAACAAGAAACAAATATAATATGTAATGACAGAAAAAAATGAAAAAAGCAGAGTGAATGAGAGAACGACGGATTTTTTTATTTTTAAAAAAA GAGAGAACAAACTGATGGATGGTTACGGGTGCG AAAAAAAAGAA CG ATCAGTAATTTCTCATCTCGTGTGTGTGTGTGCGCGTATGTGAGCCTCTATTACAACCACACACACATACATATATATTACTATTATGGCTAACA ]
[+] EMBL AA999383 [ ACGGATTTGTGAATTTTTAAAAAAAGGAGAGAACAAACTGATGGATGGTTACGGGTGCGAAAAAAAAAAAGAATCGAATCAGTAATTTCTCATCTCGTGTGTGTGTGTGCGCGTATGTGAGCCTCTATTACAACCACACNCACATAC ]
[-] EMBL CD141187 [ GAGATAGACGAAAC AAAGAATAAATCATCAATGACAATAATACCAACATATTAACAACAACAACTGAAAAAAATGGGCAAGAAACAAAAAAAATCAATCAGTTAGAGTAGTCTTAGAAACTATTGATCTAATTCTTTAAAAAAAAGGAGGGGAAATAACCTAGTTACTTAACTAACACTATATATACATATATATGCTATCATGGAAATGAA ]
[+] EMBL CD116372 [ AGATGAAAC AAAGAATAAACCATCAATGACAATAATACCAACATATTAACAACAACAACTGAAAAAAATGGGCAAGAAACAAAAAAAATCAATCAGTTAGAGTAGTCTTAGAAACTATTGATCTAATTCTTTAAAAAAAAGGAGGGGAAATAACCTAGTTACTTAACTAACACTATATATACATATATATGCTATCATGGAAATGAAAAATTCCTCAAACTTGCTCTTATCCACTGCATATATACGTAGAACTAAGGGAGAAAAGACAAAATATCTAAATAACAAATACACACACATACACTCTATCAAGATCTAGTTTTATTGAGAATCTAAACATACAAGAATTGATCTATTGTATAATCTTTCTTGTTTCGAAACAAGAACATATCTAAAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATAACAACAAAA ]
[-] EMBL CD145373 [ acGAAACAAAAGCAT AATCATCAATGACAATAATACCAACATATTAACAACAACAACTGAAAAAAATGGGCAAGAAACAAAAAAAATCAATCAGTTAGAGTAGTCTTAGAAACTATTGATCTAATTCTTTAAAAAAAAGGAGGGGAAATAACCTAGTTACTTAACTAACACTATATATACATATATATGCTATCATGGAAATGAAAAATTCCTCAAACTTGCTCTTATCCACTGCATATATACGTAGAACTAAGGGAGAAAAGACAAAATATCTAAATAACAAATACACACACATACACTCTATCAAGATCTAGTTTTATTGAGAATCTAAACATACAAGAATTGATCTATTGTATAATCTTTCTTGTTTCGAAACAAGAACATATCTAAAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATAACAACAAAAGA ]
[-] EMBL CD145229 [ ATTAACAACAACAACTG AAATAATGGGCAAGAAACAAAAAAAATCAATCAGTTAGAGTAGTCTTAGAAACTATTGATCTAATTCTTT AAAAAAAGGAGGGGAAATAACCTAGTTACTTAACTAACACTATATATACATATATATGCTATCATGGAAATGAAAAATTCCTCAAACTTGCTCTTATCCACTGCATATATACGTAGAACTAAGGGAAAAAAGACAAAATATCTAAATAACAAATACACACACATACACTCTATCAAGATCTAGTTTTATTGAGAATCTAAACATACAAGAATTGATCTATTGTATAATCTTTCTTGTTTCGAAACAAGAACATATCTAAAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATAACAACAAAAGg ]
[-] EMBL CD082562 [ ATTGATCTAATTCTTTAAAAAAAAGGAGGGGAAATAACCTAGTTACTTAACTAACACTATATATACATATATATGCTATCATGGAAATGAAAAATTCCTCAAACTTGCTCTTATCCACTGCATATATACGTAGAACTAAGGGAGAAAAGACAAAATATCTAAATAACAAATACACACACATACACTCTATCAAGATCTAGTTTTATTGAGAATCTAAACATACAAGAATTGATCTATTGTATAATCTTTCTTGTTTCGAAACAAGAACATATCTAAAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATAACAACAAAAGAATTACCATGAACTAACTATTCAAATCATTGGAATAATCATCATAATAGAACAAAGATATTAATATGGAATTAGAGTATTGTTTGTTTAAATGAGAAGGTTTTGGTTAAAACAAAACTGAATATTCTATTACGTAATCATTAAAAAAAGAGAAACAGAGATAGGATAGGAAGAGAGACAGAGCGAGGGAGAGAAAGAGGAACAATACAAAACAATAAAGATATGAATAACAACAAGATAATAGGATTATATACTACAAAATGAATGAATGATTAGTGA ]
[-] EMBL CD145212 [ TAACTAACNCTATATA ACATATATA GCTATCAT GAAATGAAAAATTCCTCAAAC TGCTCTTATCCACTGCATATATACGTAGAACT AGGGAG AAAGNCCAAATATCTAAATAACAAATACACACACATACA TCTATCAAGATCTAGTTNTATTGAGAATCTAAACATACAAGAATTGATCTATTGTATAATCTTTCTAGTTTCGAAACAAGAACATATCTAAAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGGAAAATAACAAC AAAGAATTACCATGAACTAACTATTCAAATCATTGGAATAATCATCATAATAGAACAAAGATATTAATATGGAATTAGAGTATTGTTTGTTTAAATGAGAAGGTTTTGGTTAAAACAAAACTGAATATTCTATTACGTAATCATTAAAAAAAGAGAAACAGAGATAGGATAGGAAGAGAGACAGAGCGAGGGAGAGAAAGAGGAACAATACAAAACAATAAAGATATGAATAACAACAAGATAATAGGATTATGCACTACAAAATGAATGAATGATTAGTGACATCTATTTTTGTAGATGTAATATGGCATTAAATCATATAGAATATGATCCTGTATACA CTATTTTAATTATGATAATCATAATAGATTCTATTCATAATGATT ATAGTTGATTGTATGAA TCAACTGAATACACAATGATAATATACGTGTATGTATATGTGT GTGAGGGGGTGAGAGAA]
[+] EMBL CD201922 [ AACTAACACTATATATACATATATATGCTATCATGGAAATGAAAAATTCCTCAAACTTGCTCTTATCCACTGCATATATACGTAGAACTAAGGGAGAAAAGACATAATATCTAAATAACAAATACACACACATACACTCTATCAAGATCTAGATTTATTGAGAATCTAAACATACAAGAATTGATCTATTGTATAATCTTTCTTGTTTCGAAACAAGAACATATCTAAAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATAACAACAAAAGAATTACCATGAACTAACTATTCAAATCATTGGAATAATCATCATAATAGAACAAAGATATTAATATGGAATTAGAGTATTGTTTGTTTA ]
[+] EMBL CD202125 [ AACTAACACTATATATACATATATATGCTATCATGGAAATGAAAAATTCCTCAAACTTGCTCTTATCCACTGCATATATACGTAGAACTAAGGGAGAAAAGACAAAATATCTAAATAACAAATACACACACATACACTCTATCAAGATCTAGTTTTATTGAGAATCTAAACATACAAGAATTGATCTATTGTATAATCTTTCTTGTTTCGAAACAAGAACATATCTAAAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATAACAACAAAAGAATTACCATGAACTAACTATTCAAATCATTGGAATAATCATCATAATAGAACAAAGATATTAATATGGAATTAGAGTATTGTTTGTTTAAATGAGAAGGTTTTGGTTAAAACAAAACTGAATATTCTATTACGTAATCATTAAAAAAAGAGAAACAGAGATAGGATAGGAAGAGAGACAGAGCGAGGGAGAGAAAGAGGAACANTACAAAACAATAAAGATATGAATAACAACAAGATAATAGGATTATATACTACAAAATGAATGAATGATTAGTGACATCTATTTTTGTAGATGTAATATGGCATTAAATCATATAGAATATGATCCTGTATACACCTA TTTAATTATGATTATCATAATAGAATCTATTCATAATGATTNNATAG TGA TGGATGAANTCAACTG ATACACAATGATAATATACGTGTATGTATATGTGTGGTGAGGGGGTGAGAag ]
[+] EMBL CD201937 [ AACTAACACTATATATACATATATATGCTATCATGGAAATGAAAAATTCCTCAAACTTGCTCTTATCCACTGCATATATACGTAGAACTAAGGGAGAAAAGACAAAATATCTAAATAACAAATACACACACATACACTCTATCAAGATCTAGTTTTATTGAGAATCTAAACATACAAGAATTGATCTATTGTATAATCTTTCTTGTTTCGAAACAAGAACATATCTAAAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATAACAACAAAAGAATTACCATGAACTAACTATTCAAATCATTGGAATAATCATCATAATAGAACAAAGATATTAATATGGAATTAGAGTATTGTTTGTTTAAATGAGAAGGTTTTGGTTAAAACAAAACTGAATATT ]
[-] EMBL CD201888 [ ACTAACACTATATATACATATATATGCTATCATGGAAATGAAAAATTCCTCAAACTTGCTCTTATCCACTGCATATATACGTAGAACTAAGGGAGAAAAGACAAAATATCTAAATAACAAATACACACACATACACTCTATCAAGATCTAGTTTTATTGAGAATCTAAACATACAAGAATTGATCTATTGTATAATCTTTCTTGTTTCGAAACAAGAACATATCTAAAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATAACAACAAAAGAATTACCATGAACTAACTATTCAAATCATTGGAATAATCATCATAATAGAACAAAGATATTAATATGGAATTAGAGTATTGTTTGTTTAAATGAGAAGGTTTTGGTTAAAACAAAACTGAATATTCTATTACGTAATCATTAAAAAAAGAGAAACAGAGATAGGATAGGAAGAGAGA ]
[-] EMBL CD198277 [ atTATGCTATCATGGAAATGAAAAATTCCTCAAACTTGCTCTTATCCACTGCATATATACGTAGAACTAAGGGAGAAAAGACAAAATATCTAAATAACAAATACACACACATACACTCTATCAAGATCTAGTTTTATTGAGAATCTAAACATACAAGAATTGATCTATTGTATAATCTTTCTTGTTTCGAAACAAGAACATATCTAAAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATAACAACAAAAGAATTACCATGAACTAACTATTCAAATCATTGGAATAATCATCATAATAGAACAAAGATATTAATATGGAATTAGAGTATT ]
[-] EMBL CD077629 [ TTTCGAAACAAGAACATATCTACAATAGACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATAACAACAAAAGAATTACCATGAACTAACTATTCAAATCATTGGAAT ]
[-] EMBL CD166045 [ GATGAATCAATTAGAC AGTTTTGGGAATTGAAAAATAACAACAAAAGAATTAGCATGAACTAACTATTCAAATCATTGGAATAATCATCATAATAGAACAAAGATATTAATATGGAATTAGAGTATTGTTTGTTTAAATGAGAAGGTTTTGGTTAAAACAAAACTGAATATTCTATTACGTAATCATTAAAAAAAGAGAAACAGAGATAGGATAGGAAGAG ]
[+] EMBL CD195377 [ AAAGAGGAACAATACAAAACAATAAAGATATGAATAACAACAAGATAATAGGATTATATACTACAAAATGAATGAATGATTAGTGACATCTATTTTTGTAGATGTAATATGGCATTAAATCATATAGAATATGATCCTGTATACA CTATTTTAATTATGATAATCATACTAGATTCTATTCATACTGATT ATAGCTGATTGTCTGAA TCAACTGAATACACAATGAT ]
consensusID : consensus_10573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence
[GGATACACTACGGTACTTATCTACGCTATATATACGTATATATGCTATCGTGGAGACTGTGAAATTCTCACAACGTGCTCGTTAAACACATACCATATACGTAGAACCTAAGGGAGAAACGCCATACTATCTAATTGCCGAATACCACACACCGTACACTCTGTCAAGATCTTAGTTTAGTGAGAATCTAAACGTGCAAGAATTGATCTATGGTAAAATCTTTCTTGTTTCAGAATACACGAACATATCTAAAATCGTACCAAATGAGATATGATGAATCAATTAGTCAAGTTCTGGGAATTGAAAAATAACAACAAAAGAATTA]
[-] EMBL AW186586 [GGATACACTACGGTACTTATCTACGCTATATATACGTATATATGCTATCGTGGAGACTGTGAAATTCTCACAACGTGCTCGTTAAACACATACCATATACGTAGAACCTAAGGGAGAAACGCCATACTATCTAATTGCCGAATACCACACACCGTACACTCTGTCAAGATCTTAGTTTAGTGAGAATCTAAACGTGCAAGAATTGATCTATGGTAAAATCTTTCTTGTTTCAGAATACACGAACATATCTAAAATCGTACCAAATGAGATATGATGAATCAATTAGTCAAGTTCTGGGAATTGAAAAATAACAACAAAAGAATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10573#0 TCAAATTTATTGAGACTCCTACAATGAAAACTCAATTGGATAAATCAACAAGAAACAAAT 60
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 ATAATATGTAATGAAAGAAAAAAATGAAAAAAGCAGAGTGAATGAGAGAACGACGGATTT 120
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 TTTTATTTTTAAAAAAAGAGAGAACAAACTGATGGATGGTTACGGGTGCGAAAAAAAAAG 180
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 AACGATCAGTAATTTCTCATCTCGTGTGTGTGTGTGCGCGTATGTGAGCCTCTATTACAA 240
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 CCACACACACATACATATATATTACTATTATGGCTAACAATTAATATCATTTTTGTGTAA 300
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 TAATAATAATACTTTATTAATAAAAAAAATCACGTAATTTCGAATTAAATGTAGGGGGGG 360
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 AGAGGGGCGGTGCCGGGGAAATAGATGAAACAAAGAATAAACCATCAATGACAATAATAC 420
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 CAACATATTAACAACAACAACTGAAAAAAATGGGCAAGAAACAAAAAAAATCAATCAGTT 480
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 AGAGTAGTCTTAGAAACTATTGATCTAATTCTTTAAAAAAAAGGAGGGGAAATAACCTA- 539
consensus_10573#1 -------------------------------------------------GGATACACTAC 11
*** ***
consensus_10573#0 GTTACTTAACTAACACTATATATACATATATATGCTATCATGGAAA-TGAAAAATTCCTC 598
consensus_10573#1 GGTACTTATCTA-CGCTATATATACGTATATATGCTATCGTGGAGACTGTGAAATTCTCA 70
* ****** *** * ********** ************* **** * ** ******
consensus_10573#0 AAACTTGCTC-TTATCCACTGCATATATACGTAGAAC-TAAGGGAGAAAAGACAAAATAT 656
consensus_10573#1 CAACGTGCTCGTTAAACACATACCATATACGTAGAACCTAAGGGAGAAACGCCATACTAT 130
*** ***** *** *** ************* *********** * ** * ***
consensus_10573#0 CTAAATAACAAATAC-ACACAC-ATACACTCTATCAAGATCTAGTTTTATTGAGAATCTA 714
consensus_10573#1 CTAATTGCCGAATACCACACACCGTACACTCTGTCAAGATCTTAGTTTAGTGAGAATCTA 190
**** * * ***** ****** ******** ********* **** **********
consensus_10573#0 AACATACAAGAATTGATCTATTGTATAATCTTTCTTGTTTCGAAA--CAAGAACATATCT 772
consensus_10573#1 AACGTGCAAGAATTGATCTATGGTAAAATCTTTCTTGTTTCAGAATACACGAACATATCT 250
*** * *************** *** *************** ** ** **********
consensus_10573#0 AAAATAG-ACCAAATGAGATATGATGAATCAATTAGACAAGTTTTGGGAATTGAAAAATA 831
consensus_10573#1 AAAATCGTACCAAATGAGATATGATGAATCAATTAGTCAAGTTCTGGGAATTGAAAAATA 310
***** * **************************** ****** ****************
consensus_10573#0 ACAACAAAAGAATTACCATGAACTAACTATTCAAATCATTGGAATAATCATCATAATAGA 891
consensus_10573#1 ACAACAAAAGAATTA--------------------------------------------- 325
***************
consensus_10573#0 ACAAAGATATTAATATGGAATTAGAGTATTGTTTGTTTAAATGAGAAGGTTTTGGTTAAA 951
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 ACAAAACTGAATATTCTATTACGTAATCATTAAAAAAAGAGAAACAGAGATAGGATAGGA 1011
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 AGAGAGACAGAGCGAGGGAGAGAAAGAGGAACAATACAAAACAATAAAGATATGAATAAC 1071
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 AACAAGATAATAGGATTATATACTACAAAATGAATGAATGATTAGTGACATCTATTTTTG 1131
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 TAGATGTAATATGGCATTAAATCATATAGAATATGATCCTGTATACACTATTTTAATTAT 1191
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 GATAATCATAATAGATTCTATTCATAATGATTATAGTGATTGTATGAATCAACTGAATAC 1251
consensus_10573#1 ------------------------------------------------------------
consensus_10573#0 ACAATGATAATATACGTGTATGTATATGTGTGTGAGGGGGTGAGAGAA 1299
consensus_10573#1 ------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||