These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 555 fasta sequence [CCTCGAGGCCAAAAATTCGGCACGATATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCATCTGACATGATATACTTACCAGAGTTAACTCCTTCCAGCTTGCATAATGACAAAACAATTCATCCGTGTAATGGTCACAAGGTGAAAGATTCTCTAAATGTGTCTGAGTCAACATCAAATGATCATAGCAAACTTAGCAAAGGCGAAGATGCACCATTTGAAATGGATGTTTGAGGAAATAAACCTTAGTAAATGACGTTTATAAACATTTGTAATTCAGATATTCTCTATTCTTCCGTTTACGATCCATTATTGTTATTATTTTTGTTATGTTTTCAACCAACCTGAAAAACAAGTAAATAAATACATATCTCTT] [+] EMBL CD080504 [CCTCGAGGCCAAAAATTCGGCACGAGGTTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCATCTGACATGATATACTTACCAGAGTTAACTCCTTCCAGCTTGCATAATGACAAAACAATTCATCCGTGTAATGGTCACAAGGTGAAAGATTCTCTAAATGTGTCTGAGTCAACATCAAATGATCATAGCAAACTTAGCAAAGGCGAAGATGCACCATTTGAAATGGATGTTTGAGGAAATAAACCTTAGTAAATGACGTTTATAAACATTTGTAATTCAGATATTCTCTATTCTTCCGTTTACGATCCATTATTGTTATTATTTTTGTTATGTTTTCAACCAACCTGAAAAACAAGTAAATAAATACATATCTCT ] [+] EMBL CD123717 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAATAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAA CATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACCCGTATAATATATGAACGCGATTTTATTC ] [+] EMBL CD123677 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAAGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCAC ] [+] EMBL CD123702 [ TAATTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ] [+] EMBL CD123749 [ TAATTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ] [+] EMBL CD123689 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ] [+] EMBL CD123693 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ] [+] EMBL CD123716 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ] [+] EMBL CD123727 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ] [+] EMBL CD123683 [ TATTTACCTTGCCATTGGTGGCATCGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ] [-] EMBL CD123703 [ ATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCT ] [-] EMBL CD074414 [ TTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCATCTGACATGATATACTTACCAGAGTTAACTCCTTCCAGCTTGCATAATGACAAAACAATTCATCCGTGTAATGGTCACAAGGTGAAAGATTCTCTAAATGTGTCTGAGTCAACATCAAATGATCATAGCAAACTTAGCAAAGGCGAAGATGCACCATTTGAAATGGATGTTTGAGGAAATAAACCTTAGTAAATGACGTTTATAAACATTTGTAATTCAGATATTCTCTATTCTTCCGTTTACGATCCATTATTGTTATTATTTTTGTTATGTTTTCAACCAACCTGAAAAACAAGTAAATAAATACATATCTCTT] [+] EMBL AI764822 [ TCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCATCTGACATGATATACTTACCAGAGTTAACTCCTTCCAGCTTGCATAATGACAAAACAATTCATCCGTGTAATGGTCACAAGGTGAAAGATTCTCTAAATGTGTCTGAGTCAACATCAAATGATCATAGCAAACTTAGCAAAGGCGAAGATGCACCATTTGAAATGGATGTTTGAGG AATAAACCTTAGT AATGACGTTTATAAACATTTGTAATTCAGATATTCTCTATTCTTCCGTTTACGATCCATTATTGTTATTATTTTTGTTATGTTTTCAACCAACCTGGAAAACAAGTAAAT AATACATATCTCT ] consensusID : consensus_10574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 389 fasta sequence [CGGAGCTACCAACAAATTAACACGCTAATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCT-GTCGCAACTCACC-AATTG-CTCAAACCCCTCCATCT-GACAT-GATATACTTAACCAGAGCTTAATTCCTTCCAGCTTGCATAATGGACAAAACCATTCCATCCGTGATAATGGTCACAGGGGAAAAGATCCTCTAAATGTGTCGGGTCAACATCAATGTTCTAGCGCAATTTAGAAGGGGAAGATGCCCCTTTGA] [+] EMBL CD155579 [CGGAGCTACCAACAAATTAACACGCTAATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCT GTCGCAACTCACC AATTG CTCAAACCCCTCCATCT GACAT GATATACTTA ] [+] EMBL CD155783 [CGGAGCTACCAACAAATTAACACGTTAATTGGTGGCATGGGACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCT GTCGCAAC ] [+] EMBL CD162396 [ AACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ] [+] EMBL AW146503 [ TGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCTGGTCGCAACTCACCAAATTG CTCAAACCCCTCCATCT GACAT GTTATACTTTACCAGAGCTTAATTCCTTCCAGCTTGCATAATGGACAAAACCATTCCATCCGTGATAATGGTCACAGGGGAAAAGATCCTCTAAATGTGTCGGGTCAACATCAATGTTCTAGCGCAATTTAGAAGGGGAAGATGCCCCTTTGA] [+] EMBL AI014205 [ TCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCANCT GTCGCAACTCACC AATTGNCTCAAACCCCTCCATCTGGACATGGATA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10574#0 CCTCGAGGCCAAAAATTCGGCACGATATTTACCTTGCCATTGGTGGCATGGAACGTCAAC 60 consensus_10574#1 -----------CGGAGCTACCAACAAATTAACACGCTAATTGGTGGCATGGAACGTCAAC 49 * ** * *** ** ********************** consensus_10574#0 CAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTA 120 consensus_10574#1 CAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTA 109 ************************************************************ consensus_10574#0 ACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAA 180 consensus_10574#1 ACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAA 169 ************************************************************ consensus_10574#0 TATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCAT 240 consensus_10574#1 TATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCAT 229 ************************************************************ consensus_10574#0 CTGACATGATATACTTA-CCAGAG-TTAACTCCTTCCAGCTTGCATAATG-ACAAAACAA 297 consensus_10574#1 CTGACATGATATACTTAACCAGAGCTTAATTCCTTCCAGCTTGCATAATGGACAAAACCA 289 ***************** ****** **** ******************** ******* * consensus_10574#0 TTC-ATCCGTG-TAATGGTCACAAGGTGAAAGATTCTCTAAATGTGTCTGAGTCAACATC 355 consensus_10574#1 TTCCATCCGTGATAATGGTCACAGGGGAAAAGATCCTCTAAATGTGTC-GGGTCAACATC 348 *** ******* *********** ** ****** ************* * ********* consensus_10574#0 AAATGATCATAGCA-AACTTAGCAAAGGCGAAGATGCACCATTTGAAATGGATGTTTGAG 414 consensus_10574#1 AA-TGTTC-TAGCGCAATTTAG--AAGGGGAAGATGC-CCCTTTGA-------------- 389 ** ** ** **** ** **** **** ******** ** ***** consensus_10574#0 GAAATAAACCTTAGTAAATGACGTTTATAAACATTTGTAATTCAGATATTCTCTATTCTT 474 consensus_10574#1 ------------------------------------------------------------ consensus_10574#0 CCGTTTACGATCCATTATTGTTATTATTTTTGTTATGTTTTCAACCAACCTGAAAAACAA 534 consensus_10574#1 ------------------------------------------------------------ consensus_10574#0 GTAAATAAATACATATCTCTT 555 consensus_10574#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||