These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2394 fasta sequence [CAATTCATTTCTATTCCTTTATTTATTCATTTATATGATAAGTCATTTAAGTAGTATCTATGTTAATGGAGAATCTATAAAATTGGTTAAAATATCTGATAAAGTTAATTATGCAAATCCAGATCAAGCGGGATATCATCATTGTGCATTTTGGCGTTTACCAGATGGTCATTCAATCATTGCATCATGTACACCATTTACAATGCAACGTTGTGGAAAAAAATTAGAATTTGATTATAAATGTTGTGCAGGTTATGATAAAATTGAGAAATTATCATATACCTTTAAAGATTTTAAAAAAGGAGAATGTGCACTGCAACTTTCACCTTATGAAATGTGTATGGAATTAATAGGGAATCAATCTGACATATCTCCATTTTCTGACAAAATGAAATCACTTAATCAATTCAAGACAAAAACTCCAGATAAACCATATACAATATTTGCACCAAGTACTAGAAATGCTGAAAAATATAAAGATTTTACAAATTCTGCTGAACATATTGTTCCAGGTCGTTTTTATTTGAAAGATTTAAAAACTGGATTACAATTAAATACTTTAGATCCTAAAAGGAAACTTTATGTAACACGAGAACATCATGGAACTGTTTCAGTTGATTGTGTAGAACTAGTTGATGCAGATATGGAATGTAACTCTGGCATTATCCAT-CAATTAGATATCC-TTAACAAATATTCGAAACTTGG-TAGATCATCTATTCTTAACTTGTTAGAATCTAATCCAGAAACTCAAGCATTTGCTAAAGATTTATCTGAGGTATTTAAAAATAATTTCAAAAATATTAATTCTGGTCAACGATATACTGTAATAGTACCAAATCAAAAGACATGGGAATTATTACGTCAAAAGTATTCAAGTGAACAACTTCAAAGAATTGCAGCTAATCATGTTCTATTAAATCAACATTGTTCAGGACATTTAATTCATACATTAGAAAGTTATCAATCATTATTAGGTGAAAAACTTGAATTTCTATGTGAAACTGATACAAATGGTAAAGAGAAAACATTATGT-CGTACAATATTTGGTGAAAAACATGAAATAACAACAACGGATTTAGCAGCTACTAATGGTGTAGCACATATTATAGAAGATACATTAATACCACTTTCTGTTATAACATTTAGAGAATTAATTCAGAATAAACAATATGGTGAAAAATTGAAAGCTACTGAATTTCTAAATCTTCTTGCTGAATGTGATATCAAAATGGAACTAGGAGAAAAATATGCCATAGTTTTACCACAAGATAGTTCAATGAAATGGTGGTCAACTTATTCACAATTTCAAGAACAACATAAACGTTTTCAAACTGATAAAGAATATCGTTGTCGTGTAGCACGTTATCATATTATGAAAAGTAATGATCGTTTAAATAATATTGGTAACTTCGCTAGTCATACACAAGGTCATCGTACAATGAATCCAAATGAATCATTATATGAAACAACTTATTTTAAAAAAACTCCATATGGATCACAGTTGAATTTTCATTATTCCCCAATCAATAATCTTGAGTC-CTTCGAATTAGATGATGTAACTATTTATGTTACTCCAAG-AATCAATGTTCCACCCGACTTCAATATGACTGATATTTTAAAAAATCGACCTGATACCACAATTGCCAAAAATCAAACGGAAAAAGCTAAAATGGATGAGAAATATTTCCAAAAAAGTGCACCAAAAAATCTATATCTGGTCACCACGGATAATGGTTGGAAGGATCCACGAGCTACACCAACTACAATTAATCCATATAGACCTGAATTAAATATATACACAGATAAAAATTTAGAAAATTACTTGTTACTTAATCATATACCATTATATTTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATAAATTTATGTCATCTGTTGGTATAGAATTAATTTTTTGGATGGATAATAATGGAATAATGCGTATTGGATATGAAGGTCTACCACGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCTGGTGATGGTATTATCTGGTTATTAGATGGTATATTAAAATGTCCTGAAAAAATTTGTCCATTAATTGTTGAAGATGTTGATTATTATGATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGGTGAAAAAGATCCTGTTGCACAATTTGAAAGTAGACCATTGGATATTGCTAGTCGACATCCTAATCTGTGTACTGTAGTATTACAAACAAGTGAAACAACGGTTACACTTATTGAGTCCTAATAGTAATAATCATAATCATAATGAATCATATTAGAATGATCATAGAATGTAATGACCAATACAAAAGTGTTTTTAATTCCTTTGAATGTAATCCCTTTCAAATACAAACCTAATATAATGATAGA] [+] EMBL SM47862 [CAATTCATTTCTATTCCTTTATTTATTCATTTATATGATAAGTCATTTAAGTAGTATCTATGTTAATGGAGAATCTATAAAATTGGTTAAAATATCTGATAAAGTTAATTATGCAAATCCAGATCAAGCGGGATATCATCATTGTGCATTTTGGCGTTTACCAGATGGTCATTCAATCATTGCATCATGTACACCATTTACAATGCAACGTTGTGGAAAAAAATTAGAATTTGATTATAAATGTTGTGCAGGTTATGATAAAATTGAGAAATTATCATATACCTTTAAAGATTTTAAAAAAGGAGAATGTGCACTGCAACTTTCACCTTATGAAATGTGTATGGAATTAATAGGGAATCAATCTGACATATCTCCATTTTCTGACAAAATGAAATCACTTAATCAATTCAAGACAAAAACTCCAGATAAACCATATACAATATTTGCACCAAGTACTAGAAATGCTGAAAAATATAAAGATTTTACAAATTCTGCTGAACATATTGTTCCAGGTCGTTTTTATTTGAAAGATTTAAAAACTGGATTACAATTAAATACTTTAGATCCTAAAAGGAAACTTTATGTAACACGAGAACATCATGGAACTGTTTCAGTTGATTGTGTAGAACTAGTTGATGCAGATATGGAATGTAACTCTGGCATTATCCAT CAATTAGATATCC TTAACAAATATTCGAAACTTGG TAGATCATCTATTCTTAACTTGTTAGAATCTAATCCAGAAACTCAAGCATTTGCTAAAGATTTATCTGAGGTATTTAAAAATAATTTCAAAAATATTAATTCTGGTCAACGATATACTGTAATAGTACCAAATCAAAAGACATGGGAATTATTACGTCAAAAGTATTCAAGTGAACAACTTCAAAGAATTGCAGCTAATCATGTTCTATTAAATCAACATTGTTCAGGACATTTAATTCATACATTAGAAAGTTATCAATCATTATTAGGTGAAAAACTTGAATTTCTATGTGAAACTGATACAAATGGTAAAGAGAAAACATTATGT CGTACAATATTTGGTGAAAAACATGAAATAACAACAACGGATTTAGCAGCTACTAATGGTGTAGCACATATTATAGAAGATACATTAATACCACTTTCTGTTATAACATTTAGAGAATTAATTCAGAATAAACAATATGGTGAAAAATTGAAAGCTACTGAATTTCTAAATCTTCTTGCTGAATGTGATATCAAAATGGAACTAGGAGAAAAATATGCCATAGTTTTACCACAAGATAGTTCAATGAAATGGTGGTCAACTTATTCACAATTTCAAGAACAACATAAACGTTTTCAAACTGATAAAGAATATCGTTGTCGTGTAGCACGTTATCATATTATGAAAAGTAATGATCGTTTAAATAATATTGGTAACTTCGCTAGTCATACACAAGGTCATCGTACAATGAATCCAAATGAATCATTATATGAAACAACTTATTTTAAAAAAACTCCATATGGATCACAGTTGAATTTTCATTATTCCCCAATCAATAATCTTG GCCTCTTCGAATTAGATGATGTAACTATTTATGTTACTCCAAG AATCAATGTTCCACCCGACTTCAATATGACTGATATTTTAAAAAATCGACCTGATACCACAATTGCCAAAAATCAAACGGAAAAAGCTAAAATGGATGAGAAATATTTCCAAAAAAGTGCACCAAAAAATCTATATCTGGTCACCACGGATAATGGTTGGAAGGATCCACGAGCTACACCAACTACAATTAATCTATATAGACCTGAATTAAATATATACACAGATAAAAATTTAGAAAATTACTTGTTACTTAATCATATACCATTATATTTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATAAATTTATGTCATCTGTTGGTATAGAATTAATTTTTTGGATGGATAGTAATGGAATAATGCGTATTGGATATGAAGGTCTACCACGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCTGGTGATGGTATTATCTGGTTATTAGATGGTATATTAAAATGTCCTGAAAAAATTTGTCCATTAATTGTTGAAGATGTTGATTATTATGATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGGTGAAAAAGATCCTGTTGCACAATTTGAAAGTAGACCATTGGATATTGCTAGTCGACATCCTAATCTGTGTACTGTAGTATTACAAACAAGTGAAACAACGGTTACACTTATTGAGTCCTAATAGTAATAATCATAATCATAATGAATCATATTAGAATGATCATAGAATGTAATGACCAATACAAAAGTGTTTTTAATTCCTTTGAATGTAATCCCTTTCAAATACAAACCTAATATAATGAT ] [+] EMBL AI067480 [ ATATAAAGATTTTACAAATTCTGCTGAACATATTGTTCCAGGTCGTTTTTATTTGAAAGATTTAAAAACTGGATTACAATTAAATACTTTAGATCCTAAAAGGAAACTTTATGTAACACGAGAAGATCATGGAACTGTTTCAGTTGATTGTGTAGAACTAGTTGATGCAGATATGGAATGTAACTCTGGCATTATCCATACAATTAGATATCCTTTAACAAATATTCGAAACTTGGATAGATCATCTATTCTTAACTTGTTAGAATCTAATCCAGAAACTCAAGCATTTGCTAAAGATTTATCTGAGGTATTTAAAAATAATTTCAAAAATATTAATTCTGGTCAACGATATACTGTAATAGTACCAAATCAAAAGACATGGGAATTATTACGTCAAAAGTATTC ] [+] EMBL CD201220 [ ATTATTACGTCAAAAGTATTCAAGTGAACAACTTCAAAGAATTGCAGCTAATCATGTTCTATTAAATCAACATTGTTCAGGACATTTAATTCATACATTAGAAAGTTATCAATCATTATTAGGTGAAAAACTTGAATTTCTATGTGAAACTGATACAAATGGTAAAGAG AAACATTATGTACGTACAATATTTGGTGAAAAACATGAAATAACAACAACGGATTTAGCAGCTACTAATGGTGTAGCACATATTATAGAAGATACATTAATACCACTTTCTGTTATAACATTTAGAGAATTAATTCAGAATAAACAATATGGTGAAAAATTGAAAGCTACTGAATTTCTAAATCTTCTTGCTGAATGTGATATCAAAATGGAACTA ] [+] EMBL AI975441 [ ATCTTCTTGCTGAATGTGATATCAAAATGGAACTAGGAGAAAAATATGCCATAGTTTTACCACAAGATAGTTCAATGAAATGGTGGTCAACTTATTCACAATTTCAAGAACAACATAAACGTTTTCAAACTGATAAAGAATATCGTTGTCGTGTAGCACGTTATCATATTATGAAAAGTAATGATCGTTTAAATAATATTGGTAACTTCGCTAGTCATACACAAGGTCATCGTACAATGAATCCAAATGAATCATTATATGAAACAACTTATTTTAAAAAAACTCCATATGGATCACAGTTGAATTTTCATTATTCCCCAATCAATAATCTTGAGTC CTTCGAATTAGATGATGTAACTATTTATGTTACTCCAAG AATCAATGTTCCACCCGACTTCAATATGACTGATATTTTAAAAAATCGACCTGATACCACAATTGCCAAAAATCAAACGGAAAAAGCTAAAATGGATGAGAAATATTTCCAAA ] [-] EMBL CD066286 [ ATGAAATGGTGGTCAACTTATTCGCAATTTCAAGAGCAGCATAAACGGTGTCAAACTGATAAAGAATATCGTAGTCGTGTAGCACGTTATCATATTATGAAAAGTAATGATCGTTTATATAATATTGGTAACTTCGCTAGTCATACTCAAGGTCATCGTACAATGAATCCAAATGAATCATTATATGCAACAGCTTATGTTAAAAAAACTCCATATGGATCACAGGTGAATTTTCATTATTCCCCGATCAATAATCTTGAGTC CTTCGATTTAGATGATGTAACTATTTATGTTACGCCAAG Attt ] [+] EMBL CD139858 [ GAACAACATAAACGTTTTCAAACTGATAAAGAATATCGTTGTCGTGTAGCACGTTATCATATTATGAAAAGTAATGATCGTTTAAATAATATTGGTAACTTCGCTAGTCATACACAAGGTCATCGTACAATGAATCCAAATGAATCATTATATGAAACAACTTATTTTAAAAAAACTCCATATGGATCACAGTTGAATTTTCATTATTCCCCAATCAATAATCTTGAGTC CTTCGAATTAGATGATGTAACTATTTATGTTACTCCAAGAAATC ATGTTCCACCCGACTTCAATATGACTGATATTTT AAAAATCGACCTGATACCACNATTGCCna ] [+] EMBL CD078936 [ CGTTTTCAAACTGATAAAGAATATCGTTGTCGTGTAGCACGTTATCATATTATGAAAAGTAATGATCGTTTAAATAATATTGGTAACTTCGCTAGTCATACACAAGGTCATCGTACAATGAATCCAAATGAATCATTATATGAAACAACTTATTTTAAAAAAACTCCATATGGATCACAGTTGAATTTTCATTATTCCCCAATCAATAATCTTGAGTC CTTCGAATTAGATGATGTAACTATTTATGTTACTCCAAG AATCAATGTTCCACCCGACTTCAATATGACTGATATTTTAAAAAATCGACCTGATACCACAATTGCCAAAAATCAAACGGAAAAAGCTAAAATGGATGAGAAATATTTCCAAAAAAGTGCACCAAAAAATCTATATCTGGTCACCACGGATAATGGTTGGAAGGATCCACGAGCTACACCAACTACAATTAATCCATATAGACCTGAATTAAATATATACACAGATAAAAATTTAGAAAATTACTTGTTACTTAATCATATACCATTATATTTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATANATTTATGTCATCTGTTGGTAT ] [+] EMBL CD131361 [ AAGAATATCGTTGTCGTGTAGCACGTTATCATATTATGAAAAGTAATGATCGTTTAAATAATATTGGTAACTTCGCTAGTCATACACAAGGTCATCGTACAATGAATCCAAATGAATCATTATATGAAACAACTTATTTTAAAAAAACTCCATATGGATCACAGTTGAATTTTCATTATTCCCCAATCAATAATCTTGAGTC CTTCGAATTAGATGATGTAACTATTTATGTTACTCCAAG AATCAATGTTCCACCCGACTTCAATATGACTGATATTTTAAAAAATCGACCTGATACCACAATTGCCAAAAATCAAACGGAAAAAGCTAAAATGGATGAG ] [-] EMBL CD066285 [ ATATCGTTGTCGTGTAGCACGTTATCATATTATGAAAAGTAATGATCGTTTAAATAATATTGGTAACTTCGCTAGTCATACACAAGGTCATCGTACAATGAATCCAAATGAATCATTATATGAAGCAGCTTATTTTAAAAAAACTGCATATG ] [-] EMBL CD167877 [ TGTTACTCCAAG AATCAATGTTCCACCCGACTTCAATATGACTGATATTTTAAAAAATCGACCTGATACCACAATTGCCAAAAATCAAACGGAAAAAGCTAAAATGGATGAGAAATATTTCCAAAAAAGTGCACCAAAAAATCTATATCTGGTCACCACGGATAATGGTTGGAAGGATCCACGAGCTACACCAACTACAATTAATCCATATAGACCTGAATTAAATATATACACAGATAAAAATTTAGAAAATTACTTGTTACTTAATCATATACCATTATATTTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATAAATTTATGTCATCTGTTGGTATAGAATTAATTTTTTGGATGGATAATAATGGAATAATGCGTATTGGATATGAAGGTCTACCACGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCTGGTGATGGTATTATCTGGTTATTAGATGGTATATTAAAATGTCCTGAAAAAATTTGTCCATTAATTGTTGAAGATGTTGATTATTATGATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGG ] [-] EMBL CD074863 [ ACCAACTACAATTAATCCATATAGACCTGAATTAAATATATACACAGATAAAAATTTAGAAAATTACTTGTTACTTAATCATATACCATTATATTTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATAAATTTATGTCATCTGTTGGTATAGAATTAATTTTTTGGATGGATAATAATGGAATAATGCGTATTGGATATGAAGGTCTACCACGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCTGGTGATGGTATTATCTGGTTATTAGATGGTATATTAAAATGTCCTGAAAAAATTTGTCCATTAATTGTTGAAGATGTTGATTATTATGATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGGTGAAAAAGATCCTGTTGCACAATTTGAAAGTAGACCATTGGATATTGCTAGTCGACATCCTAATCTGTGTACTGTAGTATTACAAACAAGTGAAACAACGGTTACACTTATTGAGTCCTAATAGTAATAATCATAATCATAATGAATCATATTAGAATGATCATAGAATGTAATGACCAATACAAAAGTGTTTTTAATTCCTTTGAATGTAATCCCTTTCAAATACAAACCTAATA AATGATAGA] [-] EMBL CD073391 [ TATACCATTATATTTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATAAATTTATGTCATCTGTTGGTATAGAATTAATTTTTTGGATGGATAATAATGGAATAATGCGTATTGGATATGAAGGTCTACCACGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCTGGTGATGGTATTATCTGGTTATTAGATGGTATATTAAAATGTCCTGAAAAAATTTGTCCATTAATTGTTGAAGATGTTGATTATTATGATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGGTGAAAAAGATCCTGTTGCACAATTTGAAAGTAGACCATTGGATATTGCTAGTCGACATCCTAATCTGTGTACTGTAGTATTACAAACAAGTGAAACAACGGTTACACTTATTGAGTCCTAATAGTAATAATCATAATCATAATGAATCATATTAGAATGATCATAGAATGTAATGACCAATACAAAAGTGTTTTTAATTCCTTTGAATGTAATCCCTTTCAAATACAAACCTAATATAATGATA ] consensusID : consensus_10578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CAGCTACTATGGTGTAGCACATATTATAGAAGATACATTGAGAATTAATTCAGAATAAACAATATGGTGAAAAATTGAAAGCTACTGAATTTCTAAATCTTCTTGCTGAATGTGATATCAAAATGGAACTAGGAGAAAAATATGCCATAGTTTTACCACAAGATAGTTCAATTTCAAGAACAACATAAACGTTTTCAAACTGATAAAGAATATCGTTGTCGTGTAGCACGTTATCATATTATGAAAAGTAATGATCGTTTAAATAATATTGGTAACTTCGCTAGTCATACACAAGGTCATTATGAAACAACTTATTTTAAAAAAACTCCATATGGATCACAGTTGAATTTTCATTATTCCCCAATCAATAATCTTGAGTCCTTCGAATTAGATGATGTAACTATTTATGTTACTCCAAGAATCAATGTTCCACCCGACTTTGATACCACAATTGCCAAAAATCAAACGGAAAAAGCTAAAATGGATGAGAAATATTTCCAAAAAAGTGCACCAAAAAATCTATATCTGGTCACCACGGATAATGGTTGGAAGGATCCACGAGCTACACCAAACTACATTAATCCATATAGACCTNGATTA] [+] EMBL CD081035 [CAGCTACTATGGTGTAGCACATATTATAGAAGATACATTGAGAATTAATTCAGAATAAACAATATGGTGAAAAATTGAAAGCTACTGAATTTCTAAATCTTCTTGCTGAATGTGATATCAAAATGGAACTAGGAGAAAAATATGCCATAGTTTTACCACAAGATAGTTCAATTTCAAGAACAACATAAACGTTTTCAAACTGATAAAGAATATCGTTGTCGTGTAGCACGTTATCATATTATGAAAAGTAATGATCGTTTAAATAATATTGGTAACTTCGCTAGTCATACACAAGGTCATTATGAAACAACTTATTTTAAAAAAACTCCATATGGATCACAGTTGAATTTTCATTATTCCCCAATCAATAATCTTGAGTCCTTCGAATTAGATGATGTAACTATTTATGTTACTCCAAGAATCAATGTTCCACCCGACTTTGATACCACAATTGCCAAAAATCAAACGGAAAAAGCTAAAATGGATGAGAAATATTTCCAAAAAAGTGCACCAAAAAATCTATATCTGGTCACCACGGATAATGGTTGGAAGGATCCACGAGCTACACCAAACTACATTAATCCATATAGACCTNGATTA] consensusID : consensus_10578#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 509 fasta sequence [CCCAGAATCGGCACGAGGTGGATGAGAAATATTTCCAAAAAAGTGCACCAAAAAATCTATATCTGGTCACCACGGATAATGGTTGGAAGGATCCACGAGCTACACCAACTACAATTAATCCATATGACCTGAATTAAATATATACACAGATNAAAATTTAGAAAATTACTTGTTACTTAATCATATACCATTATATTTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATAAATTTATGTCATCTGTTGGTATAGAATTAATTTTTTGGATGGATAATAATGGAATAATGCGTATTGGATATGAAGGTCTACCACGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCTGGTGATGGTATTATCTGGTTATTAGATGGTATATTAAAATGTCCTGAAAAAATTTGTCCATTAATTGTTGAAGATGTTGATTATTATGATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGGTGAAAAAGATCCTG] [+] EMBL CD083843 [CCCAGAATCGGCACGAGGTGGATGAGAAATATTTCCAAAAAAGTGCACCAAAAAATCTATATCTGGTCACCACGGATAATGGTTGGAAGGATCCACGAGCTACACCAACTACAATTAATCCATATGACCTGAATTAAATATATACACAGATNAAAATTTAGAAAATTACTTGTTACTTAATCATATACCATTATATTTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATAAATTTATGTCATCTGTTGGTATAGAATTAATTTTTTGGATGGATAATAATGGAATAATGCGTATTGGATATGAAGGTCTACCACGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCTGGTGATGGTATTATCTGGTTATTAGATGGTATATTAAAATGTCCTGAAAAAATTTGTCCATTAATTGTTGAAGATGTTGATTATTATGATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGGTGAAAAAGATCCTG] [-] EMBL CD136478 [ AATTTAGAAAATTACTTGTTACTTAATCATATACCATTATATTTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATAAATTTATGTCATCTGTTGGTATAGAAATAATTTTTTGGATGGATAATAAT ] [+] EMBL SM021 [ CCATTATATTTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATAAATTTATGTCATCTGTTGGTATAGAATTAATTTTTTGGATGGATAATAATGGAATAATGCGTATTGGATATG AGGTCTACCACGTGATCAtgc ] consensusID : consensus_10578#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [TTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATANATTTATGTCATCTGTTGGTATAGAATTAATTTTTTGGATGGATAATAATGGAATAATGCGTATTGGATATGAAGGTCTACCACGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCTGGTGATGGTATTATCTGGTTATTAGATGGTATATTAAAATGTCCTGAAAAAATTTGTCCATTAATTGTTGAAGATGTTGATTATTATGATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGGTGAGCTCAAAGTACTTTGGGGTACCGA] [-] EMBL CD128779 [TTATGGGGTGGAGATATTGGCTATTTCGAGAAGAATACAATTCATANATTTATGTCATCTGTTGGTATAGAATTAATTTTTTGGATGGATAATAATGGAATAATGCGTATTGGATATGAAGGTCTACCACGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCTGGTGATGGTATTATCTGGTTATTAGATGGTATATTAAAATGTCCTGAAAAAATTTGTCCATTAATTGTTGAAGATGTTGATTATTATGATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGGTGAGCTCAAAGTACTTTGGGGTACCGA] consensusID : consensus_10578#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [ACGTTTTGGTTCAAGTCCGGGAGTGAACATCAACTCTGAAATGCAGGTACATCAAGCTGACGAGTTCCAAATAGGACAGAACGCGCATCCTGGATCTTACTAGTAGCCGCTATATATCTTCCTCAATATTCATAAATATTTTGCAAATCAACCTAATATCAAATGTATGCGTGTCTAAGTGTTCTGAAAGGGTCCGCTAAATCTAATGATAAAATCTAGATTAAAAAAAAGAAACCTACCCATTGATCACGTGGTAGACCTTCATATCCAATACGCATTA] [+] EMBL CD068239 [ACGTTTTGGTTCAAGTCCGGGAGTGAACATCAACTCTGAAATGCAGGTACATCAAGCTGACGAGTTCCAAATAGGACAGAACGCGCATCCTGGATCTTACTAGTAGCCGCTATATATCTTCCTCAATATTCATAAATATTTTGCAAATCAACCTAATATCAAATGTATGCGTGTCTAAGTGTTCTGAAAGGGTCCGCTAAATCTAATGATAAAATCTAGATTAAAAAAAAGAAACCTACCCATTGATCACGTGGTAGACCTTCATATCCAATACGCATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10578#0 CAATTCATTTCTATTCCTTTATTTATTCATTTATATGATAAGTCATTTAAGTAGTATCTA 60 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TGTTAATGGAGAATCTATAAAATTGGTTAAAATATCTGATAAAGTTAATTATGCAAATCC 120 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 AGATCAAGCGGGATATCATCATTGTGCATTTTGGCGTTTACCAGATGGTCATTCAATCAT 180 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TGCATCATGTACACCATTTACAATGCAACGTTGTGGAAAAAAATTAGAATTTGATTATAA 240 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 ATGTTGTGCAGGTTATGATAAAATTGAGAAATTATCATATACCTTTAAAGATTTTAAAAA 300 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 AGGAGAATGTGCACTGCAACTTTCACCTTATGAAATGTGTATGGAATTAATAGGGAATCA 360 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 ATCTGACATATCTCCATTTTCTGACAAAATGAAATCACTTAATCAATTCAAGACAAAAAC 420 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TCCAGATAAACCATATACAATATTTGCACCAAGTACTAGAAATGCTGAAAAATATAAAGA 480 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TTTTACAAATTCTGCTGAACATATTGTTCCAGGTCGTTTTTATTTGAAAGATTTAAAAAC 540 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TGGATTACAATTAAATACTTTAGATCCTAAAAGGAAACTTTATGTAACACGAGAACATCA 600 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TGGAACTGTTTCAGTTGATTGTGTAGAACTAGTTGATGCAGATATGGAATGTAACTCTGG 660 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 CATTATCCATCAATTAGATATCCTTAACAAATATTCGAAACTTGGTAGATCATCTATTCT 720 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TAACTTGTTAGAATCTAATCCAGAAACTCAAGCATTTGCTAAAGATTTATCTGAGGTATT 780 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TAAAAATAATTTCAAAAATATTAATTCTGGTCAACGATATACTGTAATAGTACCAAATCA 840 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 AAAGACATGGGAATTATTACGTCAAAAGTATTCAAGTGAACAACTTCAAAGAATTGCAGC 900 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TAATCATGTTCTATTAAATCAACATTGTTCAGGACATTTAATTCATACATTAGAAAGTTA 960 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TCAATCATTATTAGGTGAAAAACTTGAATTTCTATGTGAAACTGATACAAATGGTAAAGA 1020 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 GAAAACATTATGTCGTACAATATTTGGTGAAAAACATGAAATAACAACAACGGATTTAGC 1080 consensus_10578#1 -----------------------------------------------------------C 1 consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 AGCTACTAATGGTGTAGCACATATTATAGAAGATACATTAATACCACTTTCTGTTATAAC 1140 consensus_10578#1 AGCTACTA-TGGTGTAGCACATATTATAGAAGATACATT--------------------- 39 consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 ATTTAGAGAATTAATTCAGAATAAACAATATGGTGAAAAATTGAAAGCTACTGAATTTCT 1200 consensus_10578#1 -----GAGAATTAATTCAGAATAAACAATATGGTGAAAAATTGAAAGCTACTGAATTTCT 94 consensus_10578#2 --CCCAGAATCGGCACGAGGTGGATGAGAAATATTTCCAAAAAAGTGCACCAAAAAATCT 58 consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 AAATCTTCTTGCTGAATGTGATATCAAAATGGAACTAGGAGAAAAATATGCCATAGTTTT 1260 consensus_10578#1 AAATCTTCTTGCTGAATGTGATATCAAAATGGAACTAGGAGAAAAATATGCCATAGTTTT 154 consensus_10578#2 ATATCTGGTCACCACGGATAATGGTTGGAAGGATCCACGAGCTACACCAACTACAATTAA 118 consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 ACCACAAGATAGTTCAATGAAATGGTGGTCAACTTATTCACAATTTCAAGAACAACATAA 1320 consensus_10578#1 ACCACAAGATAGTTCAAT--------------------------TTCAAGAACAACATAA 188 consensus_10578#2 TCCATATGACCTGAATTAAATATATACACAG-------ATNAAAATTTAGAAAATTACTT 171 consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 ACGTTTTCAAACTGATAAAGAATATCGTTGTCGTGTAGCACGTTATCATATTATGAAAAG 1380 consensus_10578#1 ACGTTTTCAAACTGATAAAGAATATCGTTGTCGTGTAGCACGTTATCATATTATGAAAAG 248 consensus_10578#2 GTTACTTAATCATATACCATTATATTTATGGGGTGGAG-ATATTGGC-TATTTCGAGAAG 229 consensus_10578#3 -------------------------TTATGGGGTGGAG-ATATTGGC-TATTTCGAGAAG 33 consensus_10578#4 -------------------------------------ACGTTTTGGTTCAAGTCCGGGAG 23 ** * ** consensus_10578#0 TAATGATCGTTTAAATAATATTGGTAACTTCGCTAGTCATACACAAGGTCATCGTACAAT 1440 consensus_10578#1 TAATGATCGTTTAAATAATATTGGTAACTTCGCTAGTCATACACAAGGTCAT-------- 300 consensus_10578#2 -AAT-ACAATTCATAAATTTATGTCA--TCTGTTGGT-ATAGAATTAATTTT-------- 276 consensus_10578#3 -AAT-ACAATTCATANATTTATGTCA--TCTGTTGGT-ATAGAATTAATTTT-------- 80 consensus_10578#4 TGAACATCAACTCTGAAATGCAGGTA----CATCA---AGCTGACGAGTTCC-------- 68 * * * * * * * * consensus_10578#0 GAATCCAAATGAATCATTATATGAAACAACTTATTTTAAAAAAACTCCATATGGATCACA 1500 consensus_10578#1 -------------------TATGAAACAACTTATTTTAAAAAAACTCCATATGGATCACA 341 consensus_10578#2 ---------------------TTGGATGGATAATAATGGAATAA-----TGCGTATTGGA 310 consensus_10578#3 ---------------------TTGGATGGATAATAATGGAATAA-----TGCGTATTGGA 114 consensus_10578#4 -----------------------AAATAGGACAGAACGCGCAT------CCTGGATCTTA 99 * * * ** * consensus_10578#0 GTTGAATTTTCATTATTCCCCAATCAATAATCTTGAGTCCTTCGAATTAGATGATGTAAC 1560 consensus_10578#1 GTTGAATTTTCATTATTCCCCAATCAATAATCTTGAGTCCTTCGAATTAGATGATGTAAC 401 consensus_10578#2 TATGAAGGTCTACCA---CGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCT 367 consensus_10578#3 TATGAAGGTCTACCA---CGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCT 171 consensus_10578#4 CTAGTAGCCGCTATATATCTTCCTCAATATTCATAAATATTTTGCA--AATCAACCTAAT 157 * * * * ***** * * * ** * * * consensus_10578#0 TAT--TTATGTTACTCCAAGAATCAATGTTCCACCCGACTTCAATATGACTGATATTTTA 1618 consensus_10578#1 TAT--TTATGTTACTCCAAGAATCAATGTTCCACCCGACTT------------------- 440 consensus_10578#2 GGTGATGGTATTATCTGGTTATTAGATGGTATATTAAAATG------------------- 408 consensus_10578#3 GGTGATGGTATTATCTGGTTATTAGATGGTATATTAAAATG------------------- 212 consensus_10578#4 A----TCAAATGTATGCGTGTCTAAGTGTTCTGAAAGGGTC------------------- 194 * * * ** * * consensus_10578#0 AAAAATCGACCTGATACCACAATTGCCAAAAATCAAACGGAAAAAGCTAAAATGGATGAG 1678 consensus_10578#1 -----------TGATACCACAATTGCCAAAAATCAAACGGAAAAAGCTAAAATGGATGAG 489 consensus_10578#2 -----------TCCTGAAAAAATT--TGTCCATTAATTGTTGAAGATGTTGATTATTATG 455 consensus_10578#3 -----------TCCTGAAAAAATT--TGTCCATTAATTGTTGAAGATGTTGATTATTATG 259 consensus_10578#4 -----------CGCTAAATCTAATGATAAAATCTAGATTAAAAAAAAGAAACCTACCCAT 243 * * * * ** consensus_10578#0 AAATATTTCCAAAAAAGTGCACCAAAAAATCTATATCTGGTCACCACGGATAATGGTTGG 1738 consensus_10578#1 AAATATTTCCAAAAAAGTGCACCAAAAAATCTATATCTGGTCACCACGGATAATGGTTGG 549 consensus_10578#2 ATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGGTGA------AAAAGATCCTG 509 consensus_10578#3 ATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGGTGAGCTC--AAAGTACTTTG 317 consensus_10578#4 TGAT-CACGTGGTAGACCTTCATATCCAATACGCATTA---------------------- 280 * * * * consensus_10578#0 AAGGATCCACGAGCTACACCAACTACAATTAATCCATATAGACCTGAATTAAATATATAC 1798 consensus_10578#1 AAGGATCCACGAGCTACACCAAACTACATTAATCCATATAGACCTNGATTA--------- 600 consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 GGGTACCGA--------------------------------------------------- 326 consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 ACAGATAAAAATTTAGAAAATTACTTGTTACTTAATCATATACCATTATATTTATGGGGT 1858 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 GGAGATATTGGCTATTTCGAGAAGAATACAATTCATAAATTTATGTCATCTGTTGGTATA 1918 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 GAATTAATTTTTTGGATGGATAATAATGGAATAATGCGTATTGGATATGAAGGTCTACCA 1978 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 CGTGATCAATGGCCTAAAGTAATTCAATGGAATTTACATGCTGGTGATGGTATTATCTGG 2038 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TTATTAGATGGTATATTAAAATGTCCTGAAAAAATTTGTCCATTAATTGTTGAAGATGTT 2098 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 GATTATTATGATGTTTATGTAATGGCATGTCAAACATCAATATTACCTGGTGAAAAAGAT 2158 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 CCTGTTGCACAATTTGAAAGTAGACCATTGGATATTGCTAGTCGACATCCTAATCTGTGT 2218 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 ACTGTAGTATTACAAACAAGTGAAACAACGGTTACACTTATTGAGTCCTAATAGTAATAA 2278 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TCATAATCATAATGAATCATATTAGAATGATCATAGAATGTAATGACCAATACAAAAGTG 2338 consensus_10578#1 ------------------------------------------------------------ consensus_10578#2 ------------------------------------------------------------ consensus_10578#3 ------------------------------------------------------------ consensus_10578#4 ------------------------------------------------------------ consensus_10578#0 TTTTTAATTCCTTTGAATGTAATCCCTTTCAAATACAAACCTAATATAATGATAGA 2394 consensus_10578#1 -------------------------------------------------------- consensus_10578#2 -------------------------------------------------------- consensus_10578#3 -------------------------------------------------------- consensus_10578#4 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||