These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1093 fasta sequence [CTGGCTGGGATGACAGTAAACTTCGACATCTCCCATTACTTCGAGTGTCTATGATACAGGTATCACATTGTTTGGTATCACTATTCAACGAAACTACCAACAGTTCTTTCATGATTGCAGTTCTGAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGACAGAAGAAGTCTCATGCGCCGATCAGGTATCCTTTTTTTCCAAACTCACTTTCCTCATTACAAAAGAGCTGAAGGACTAGGGGCACGATAATAGCATCAGATTGTTCTAATAGCTTATCGGATAACCACGCGTAGTCGTGATTGTGCTAAATCTAGACGCCAGACACTGATCTACAATCGTAGATATGTGGTACTGGGACCCACCGCCATGCCCATTACCGGAAGCAGAATCACGGCGACGATTACGTTTACCTCCAACCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCACCATGTAAAACTGTAAAACTTCTATAGCTGCCCTCTGCAACGACATCTCTCCACACTTTAAAGTCCTTGACATTCCATCTGGAGAACGTACAATGTGTATAACGTACTGAAATCGGATTTTACGCAGTTCCATAAGGGCGATAACGGCATAATGTAAAAAAAGTAAAGTATCGGTCAAACTGCCGGCAAAAACTACTATGGAAAGATAATCAGATTCCTTTGGTTGTATAACACGAACAGTATAAAACAACCAAAATGCAAATAAAACAACTAACACAAGACAAAGAAAAAGAGTTCGACAAAGACGGATACGTGGAAGTATGGCAGTAGTACTGCCACAAAATGGTCGACAAGGGGAGCTTAAAAACCACAGCGCGATAGCGAGGAGTACAAGTTTTACAGATATACTGATGAGATGTCCTTCACAAGTTGGTTCACAACCTTCAGTTGACCATCCAATCCAAAACGGAAAAAGTGGGAGCAAAAGCATTAGGACTGGAGACAGTAATGAACCGATTGCCAGAAATGCAGAAATGGCANAACTTAATGTATGTGAGCATTTGAACATTTTTATTTCATCCGCTTCGGATCGTATTANAGCAGCTGCAGCACCGCTA] [+] EMBL CD061777 [CTGGCTGGGATGACAGTAAACTTCGACATCTCCCATTACTTCGAGTGTCTATGATACAGGTATCACATTGTTTGGTATCACTATTCAACGAAACTACCAACAGTTCTTTCATGATTGCAGTTCTGAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGACAGAAGAAGTCTCATGCGCCGATCAGGTATCCTTTTTTTCCAAACTCACTTTCCTCATTACAAAAGAGCTGAAGGACTAGGGGCACGATAATAGCATCAGATTGTTCTAATAGCTTATCGGATAACCACGCGTAGTCGTGATTGTGCTAAATCTAGACGCCAGACACTGATCTACAATCGTAGATATGTGGTACTGGGACCCACCGCCATGCCCATTACCGGAAGCAGAATCACGGCGACGATTACGTTTACCTCCAACCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCACCATGTAAAACTGTAAAACTTCTATAGCTGCCCTCTGCAACGACATCTCTCCACACTTTAAAGTCCTTGACATTCCATCTGGAGAACGTACAAT ] [+] EMBL CD122729 [ AATTCCACCATGTAAAACTGTAAAACTTCTATAGCTGCCCTCTGCAACGACATCTCTCCACACTTTAAAGTCCTTGACATTCCATCTGGAGAACGTACAATGTGTATAACGTACTGAAATCGGATTTTACGCAGTTCCATAAGGGCGATAACGGCATAATGTAAAAAAAGTAAAGTATCGGTCAAACTGCCGGCAAAAACTACTATGGAAAGATAATCAGATTCCTTTGGTTGTATAACACGAACAGTATAAAACAACCAAAATGCAAATAAAACAACTAACACAAGACAAAGAAAAAGAGTTCGACAAAGACGGATACGTGGAAGTATGGCAGTAGTACTGCCACAAAATGGTCGACAAGGGGAGCTTAAAAACCACAGCGCGATAGCGAGGAGTACAAGTTTTACAGATATACTGATGAGATGTCCTTCACAAGTTGGTTCACAACCTTCAGTTGACCATCCAATCCAAAACGGAAAAAGTGGGAGCAAAAGCATTAGGACTGGAGACAGTAATGAACCGATTGCCAGAAATGCAGAAATGGCANAACTTAATGTATGTGAGCATTTGAACATTTTTATTTCATCCGCTTCGGATCGTATTANAGCAGCTGCAGCACCGCTA] consensusID : consensus_10593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 858 fasta sequence [AANAATTTGGCACGAGGGCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTGTTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGTGCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAAGTTATTACTAACCACAGTAATTTTGTTGTGCTGCCAATTTTCTCGTTTTTTTCTCTTCATCTTTTTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAG-TTTACTTTTAGCTTTATTATAATTACT-TTTCCCGTGTACCGATTTAATCGATGTTATTACCGGTTAATG-CCAATAACTTTGTTTCTTCAGTGAATTTTGATCTTTTGCTAATTGAGTTTTTATAAAATGTA] [+] EMBL CD079621 [AANAATTTGGCACGAGGGCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTGTTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGTGCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAAGTTATTACTAACCACAGTAATTNTGTTGTGCTGCCAATTNTCTCGTTNTTTTCTCTTCATCTTTNTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAGNNTTAC TTTAGCTNTATTATAATTACTNTTNCCNGTGTACCGATTNNATCGATNGTATTACCGGNTAATGCCCCAT ACTNTGNTNCTTCAGTGAATTNTG ] [-] EMBL CD170834 [ AGTATTGTAGCTGATCGGGCTCTATCTCGTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGCTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAATATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTACATTTATATGAAGTCCAGAATTCGTTTGCTTTTCGCACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGACTTTTTCTGTT ] [-] EMBL CD073885 [ TATTAGAACCGTTGNAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTGTTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGTGCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAAGTTATTACTAACCACAGTAATTTTGTTGTGCTGCCAATTTTCTCGTTTTTTTCTCTTCATCTTTTTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAG TTTACTTTTAGCTTTATTATAATTACT TTTCCCGTGTACCGATTTAATCGATGTTATTACCGGTTAATG CCAATAACTTTGTATCTTCAGTGAATTTTG ] [-] EMBL CD074937 [ CTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTTTATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTGTTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGTGCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAAGTTATTACTAACCCCAGTAATTTTGTTGTGCTGCCAATTTTCTCGTTTTTTTCTCTTCATCTTTTTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAG TTTACTTTTAGCTTTATTATAATTACT TTTCCCGTGTACCGATTTAATCGATGTTATTACCGGTTAATG CCAATAACTTTGTTTCTTCAGTGAATTTTGATCTTTTGCTAATTGAGTTTTTATAAAATGTA] [-] EMBL CD076713 [ GATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTGTTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGTGCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAAGTTATTACTAACCACAGTAATTTTGTTGTGCTGCCAATTTTCTCGTTTTTTTCTCTTCATCTTTTTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAG TTTACTTTTAGCTTTATTATAATTACT TTTCCTGTGTACCGATTTAATCGATGTTATTACCGGTTAATG CCAATAACTTTGTTTCTTCAGTGAATTTTGATCTTTTGCTAATTGAGTTTTTATAAAATGTA] consensusID : consensus_10593#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 727 fasta sequence [ACCATCCGCTAAACTACGAGATAGAGCCCGATCAGCTACAATACTCCATACCTGCTGTCCGCCTGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGACGTGTAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCTCCCATTACTTCGAGTGTTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCAGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTATCCTTTTTTCCAACTCAATTTCCTCATACAAACGAACTGAAGCACTAGGGGCAGTAATAGCACCAGATTGCTCAACAGTATACGTAACACCGTTTTCTGATTTTCCTAAACCAGCCCCACCGCTCCTCGTGCCAAATTNTTGGCCTGGA] [-] EMBL CD090651 [ACCATCCGCTAAACTACGAGATAGAGCCCGATCAGCTACAATACTCCATACCTGCTGTCCGCCTGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGAAGAATAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCTCCCATAACTTCGtc ] [-] EMBL CD090658 [ACCATCCGCTAAACTACGAGATAGAGCCCGATCAGCTACAATACTCCATACCTGCTGTCCGCCTGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGATAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTAAAAAAGTAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACA ] [-] EMBL CD081114 [ CCATCCGCTAAACTACGAGATAGAGCCCGATCAGCTACAATACTCCATACCTGCTGTCCGCCTGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGACGTGTAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCTCCCATTACTTCGAGTGTTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCAGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTATCCTTTTTTCCAACTCAATTTCCTCATACAAACGAACTGAAGCACTAGGGGCAGTAATAGCACCAGATTGCTCAACAGTATACGTAACACCGTTTTCTGATTTTCCTAAACCAGCCCCACCGCTCCTCGTGCCAAATTNTTGGCCTGGA] [+] EMBL CD189889 [ CCTGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGACGTGTAACACGCATATACT ] [+] EMBL CD189402 [ TGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGACGTGTAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCTCCCATTACTTCGAGTGTTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCAGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTNCT AACAGCCAAAAG AGTCTCATGCGCCGTTTACGT ] [-] EMBL CD189322 [ AAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGACGTGTAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCTCCCATTACTTCGAGTGTTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCAGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTAT ] consensusID : consensus_10593#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [CGGGCCAANAATCGGCACGAGGCCCTTTCTTGGAAAGATTTAATCCTTCGGCTGCTACACCACAACAAGATGCAGCCGCAGCTGCATCAGCCATTGCAACAGTAAAGAGAGCTAAATATCAACAGAATACCAAGCAAGTTAACACTTCAGACAGTCTAGATCCATATCCTCTACTTCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTNTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTTCA] [+] EMBL CD083141 [CGGGCCAANAATCGGCACGAGGCCCTTTCTTGGAAAGATTTAATCCTTCGGCTGCTACACCACAACAAGATGCAGCCGCAGCTGCATCAGCCATTGCAACAGTAAAGAGAGCTAAATATCAACAGAATACCAAGCAAGTTAACACTTCAGACAGTCTAGATCCATATCCTCTACTTCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTNTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTTCA] consensusID : consensus_10593#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [CTCGGCATTAGCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGNTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTG] [+] EMBL CD084434 [CTCGGCATTAGCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGNTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTG] consensusID : consensus_10593#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [TTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCGGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTATCCTTTTTTCCAACTCAATTTCCTCATACAAACGAACTGAAGCACTAGGGGCAGTAATAGCACCAGATTGCTCAACAGTATACGTAACACCGTTTTCTGATTTTCCTAAACCAGCCCCACCACTATCTACATCGTAAAATTTGTACTTGGACCCACCGCCATTCCCACTACCAGAAGCAGAACCACCGCGACGATTACGTTTACCTCCACCCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCACCATGTAAAACTGTAAAACTTCTATAGCTGCC] [-] EMBL CD155308 [TTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCGGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTATCCTTTTTTCCAACTCAATTTCCTCATACAAACGAACTGAAGCACTAGGGGCAGTAATAGCACCAGATTGCTCAACAGTATACGTAACACCGTTTTCTGATTTTCCTAAACCAGCCCCACCACTATCTACATCGTAAAATTTGTACTTGGACCCACCGCCATTCCCACTACCAGAAGCAGAACCACCGCGACGATTACGTTTACCTCCACCCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCACCATGTAAAACTGTAAAACTTCTATAGCTGCC] consensusID : consensus_10593#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [TACCTCCACCCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCCTGTAAATACACATTTTTAATAAAATGAGGTTTCATTGAGCTTAAAGCAATAACGTGATATGTAGAAGATACATCTAAAACTGTAAGCATATTTGGTGCGATATGTGCACTAAGGATGAATTTTTGAACAGAAATCCCCAATATATAATTGACGAAAAAAATACAAGAAGCAGTAATAGTTATTCGAACAAAAATATAGTTCTGATTTAGTTGAAATACTAAATAATCAGTACGGACAACAGTCCATGTTTCATTACGATATATTTAAAGTGAACCGCAAATATTTTCTTCCCAACAAAATTATCTCAGCTGTC] [+] EMBL CD138741 [TACCTCCACCCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCCTGTAAATACACATTTTTAATAAAATGAGGTTTCATTGAGCTTAAAGCAATAACGTGATATGTAGAAGATACATCTAAAACTGTAAGCATATTTGGTGCGATATGTGCACTAAGGATGAATTTTTGAACAGAAATCCCCAATATATAATTGACGAAAAAAATACAAGAAGCAGTAATAGTTATTCGAACAAAAATATAGTTCTGATTTAGTTGAAATACTAAATAATCAGTACGGACAACAGTCCATGTTTCATTACGATATATTTAAAGTGAACCGCAAATATTTTCTTCCCAACAAAATTATCTCAGCTGTC] consensusID : consensus_10593#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [CGAAGTTATGGGATGATGTCAAAGNNNACTNGCTCTCCAGGAAAATCTTTGGATCCGTATGAAGCAGCACAAGCTGTTTTCCCTACTCTCATCCGGCCGTTACAAAAGTATATGCGTGTTACACGTCAACAAGCTCGTCACCCTGTGGATATGGTAATTGATCATCTTGCTCTTTGCTTAGCNCAAGGCCAGACACCTCACGCANACNNGGAAAG] [+] EMBL CD090642 [CGAAGTTATGGGATGATGTCAAAGNNNACTNGCTCTCCAGGAAAATCTTTGGATCCGTATGAAGCAGCACAAGCTGTTTTCCCTACTCTCATCCGGCCGTTACAAAAGTATATGCGTGTTACACGTCAACAAGCTCGTCACCCTGTGGATATGGTAATTGATCATCTTGCTCTTTGCTTAGCNCAAGGCCAGACACCTCACGCANACNNGGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10593#1 ------------------------------------------------------------ consensus_10593#4 ------------------------------------------------------------ consensus_10593#3 CGGGCCAANAATCGGCACGAGGCCCTTTCTTGGAAAGATTTAATCCTTCGGCTGCTACAC 60 consensus_10593#0 -------------------------------CTGGCTGGGATGACAGTAAACTTCGACAT 29 consensus_10593#5 ------------------------------------------------------------ consensus_10593#2 --------------------------------------ACCATCCGCTAAACTACGAGAT 22 consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 ------------------------------------------------------------ consensus_10593#4 ------------------------------------------------------------ consensus_10593#3 CACAACAAGATGCAGCCGCAGCTGCATCAGCCATTGCAACAGTAAAGAGAGCTAAATATC 120 consensus_10593#0 CTCCCATTACTTCGAGTGTCTATGATACAGGTATCACATTGTTTGGTATCACT-ATTCAA 88 consensus_10593#5 ------------------TTTTTGAA--AGGTACCAA--TGTTTG--ATCAC--ATTCAA 34 consensus_10593#2 AGAGCCCGATCAGCTACAATACTCCA-TACCTGCTGT-CCGCCTGGATGCACTAATTTAG 80 consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 --------------------------------------AANAATTTGGCACGAGGGCCTA 22 consensus_10593#4 -------------------------------------------CTCGGCATTAG--CCTA 15 consensus_10593#3 AACAGAATACCAAGCAAGTTAACACTTCAGACAGTCTAGATCCATATCCTCTACTTCCTA 180 consensus_10593#0 CGAAACTACCA-ACAGTTCTTTCATGATTGCAGTTCTGAACAGCAAGGCGCTTAACATGA 147 consensus_10593#5 CAA---CACCA-ACAGTTCTTTCATTATTGCGGTTTTCAACAGCAAGGCGCTTAACATGA 90 consensus_10593#2 GAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGT-TGA 139 consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 AATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTC 82 consensus_10593#4 AATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTC 75 consensus_10593#3 AATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTC 240 consensus_10593#0 GTAAAAGCCTCCTCAACAGACAGAAGAAGTCTCATGC-GCCGATCAGGTATCCTTTTTTT 206 consensus_10593#5 GTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGC-GCCGTTTACGTATCCTTTTTTC 149 consensus_10593#2 TATTTAGCTCTCTTTACTGTTGCAA--TGGCTGATGCAGCTGCGGCTGCATCTTGTTGT- 196 consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 --TACCTCCACCCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCCTGTAAATA 58 consensus_10593#1 GT-AGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGT-TGCT 140 consensus_10593#4 GNTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGT-TGCT 134 consensus_10593#3 GT-AGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGT-TGCT 298 consensus_10593#0 CCAAACTCACTTTCCTCATTACAAAAGAGCTGAAGGACTAGGGGCACGATAATAG-CATC 265 consensus_10593#5 C--AACTCAATTTCCTCAT-ACAAACGAACTGAAGCACTAGGGGCA--GTAATAG-CACC 203 consensus_10593#2 ---GGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGA--AAGCGTGAGGTGACAGGCCAT 251 consensus_10593#7 -CGAAGTTATGGGATGATGTCAAAGNNNACTNGCTCTCCAGGAAAATCTTTGGATCCGTA 59 consensus_10593#6 C---ACATTTTTAATAAAATGAGGTTTCATTGAGCTTAAAGCAATAACGTGATATGTAGA 115 * consensus_10593#1 TTGTACTGTTAGACGCCTGCCGCTTATCTATCTT--ATCGAAGAAATATTAGAACCGTTG 198 consensus_10593#4 TTGTACTGTTAGACGCCTGCCGCTTATCTATCTT--ATCGAAGAAATATTAGAACCGTTG 192 consensus_10593#3 TTGTACTGTTAGACGCCTGCCGCTTATCTATCTT--ATCGAAGAAATATTAGAACCGTTG 356 consensus_10593#0 AGATTGTTCTAATAGCTTATCGGATAACCACGCGTAGTCGTGATTGTGCTAAATCTA--G 323 consensus_10593#5 AGATTGCTC-AACAGTATAC---GTAACACCGTT---TTCTGATTTTCCTAAACC----- 251 consensus_10593#2 AAGCTAAGCAAAGAGCAAGATGATCAATTACCAT--ATCCACAGGGTGACGAGCTTGTTG 309 consensus_10593#7 TGAAGCAGCACAAGCTGTTTTCCCTACTCTCATCCGGCCGTTACAAAAGTATATGCGT-- 117 consensus_10593#6 AGATACATCTAAAACTGTAAGCATATTTGGTGCGATATGTGCACTAAGGATGAATTTTTG 175 consensus_10593#1 GAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAA 258 consensus_10593#4 GAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAA 252 consensus_10593#3 GAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAA 416 consensus_10593#0 ACGCCAGACA---CTGATCTACAA-TCGTAGATATG---TGGTACTGGGACCCACCGCCA 376 consensus_10593#5 AGCCCCACCA---CT-ATCTACA--TCGTAAA-AT----TTGTACTTGGACCCACCGCCA 300 consensus_10593#2 ACGTGTAACA---CGCATATACTT-TTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTT 365 consensus_10593#7 GTTACACGTCAACAAGCTCGTCACCCTGTGGATA-----TGGTAATTGA--TCATCTTGC 170 consensus_10593#6 AACAGAAATC--CCCAATATATAATTGACGAA--------AAAAATACAAGAAGCAGTAA 225 * * consensus_10593#1 TGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCA 318 consensus_10593#4 TGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCA 312 consensus_10593#3 TGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCA 476 consensus_10593#0 TGCCCATTAC---CGGAAGCA--GA-ATCACGGCGACGATTACGTTTACCTCCAACCCCG 430 consensus_10593#5 TTCCCACTAC---CAGAAGCA--GA-ACCACCGCGACGATTACGTTTACCTCCACCCCCG 354 consensus_10593#2 GTGCTGCTTCATACGGATCCA--AAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCT 423 consensus_10593#7 TCTTTGCTTAGCNCAAGGCCAGACACCTCACGCANACNNGGAAAG--------------- 215 consensus_10593#6 TAGTTATTCGA-ACAAAAATATAGTTCTGATTTAGTTGAAATACTAAATAATCAGTACGG 284 * consensus_10593#1 TTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACT--CGATTCAGTTTT 376 consensus_10593#4 TTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACT--CGATTCAGTTTT 370 consensus_10593#3 TTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACT--CGATTCAGTTNT 534 consensus_10593#0 CTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCA--CCATGTAAAACT 488 consensus_10593#5 CTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCA--CCATGTAAAACT 412 consensus_10593#2 CC-CATTACTTCGAGTGTTTTTGAAAGGTACCAATGTTTGATCACA--TTCAACAACACC 480 consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 --ACAACAGTCCATGTTTCATTACGATATATTTAAAGTGAACCGCAAATATTTTCTTCCC 342 consensus_10593#1 ATCCGTTCGTCAATTTTTGCATTTATATGAAGTC-----CAGAATTCGTTTGCTTTTCAC 431 consensus_10593#4 ATCCGTTCGTCAATTTTTGCATTTATATGAAGTC-----CAGAATTCGTTTGCTTTTCAC 425 consensus_10593#3 ATCCGTTCGTCAATTTTTGCATTTATATGAAGTC-----CAGAATTCGTTTGCTTTTT-C 588 consensus_10593#0 G-TAAAACTTCTATAGCTGCCCTCTGCAACGACATCTCTCCACACTTTAAAGTCCTTGAC 547 consensus_10593#5 G-TAAAACTTCTATAGCTGCC--------------------------------------- 432 consensus_10593#2 AACAGTTCTTTCATTATTGCAGTTTTCAACAGCA---------------AGGCGCTTAAC 525 consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 AACAAAATTATCTCAGCTGTC--------------------------------------- 363 consensus_10593#1 ACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTG 491 consensus_10593#4 ACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTG---------- 475 consensus_10593#3 A----------------------------------------------------------- 589 consensus_10593#0 ATTCCATCTGGAGAACGTACAATGTGTATAACGTACTGAAATCGGATTTTACGCAGTTCC 607 consensus_10593#5 ------------------------------------------------------------ consensus_10593#2 ATG--AGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTATCCTT 583 consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 TTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGT 551 consensus_10593#4 ------------------------------------------------------------ consensus_10593#3 ------------------------------------------------------------ consensus_10593#0 ATAAGGGCGATAACGGCATAATGTAAAAAAAGTAAAGTATCGGTCAAACTGCCGGCAAAA 667 consensus_10593#5 ------------------------------------------------------------ consensus_10593#2 TTTTCCAACTCAATTTCCTCATACAAACGAACTGAAGCACTAGGGGCAGTAATAGCACCA 643 consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 GCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAA 611 consensus_10593#4 ------------------------------------------------------------ consensus_10593#3 ------------------------------------------------------------ consensus_10593#0 ACTACTATGGAAAGATAATCAGATTCCTTTGGTTGTATAACACGAACAGTATAAAACAAC 727 consensus_10593#5 ------------------------------------------------------------ consensus_10593#2 GATTGCTCAACAGTATACGTAACACCGTTTTCTGATTTTCCTAAACCAGCCCCACCGCTC 703 consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 GTTATTACTAACCACAGTAATTTTGTTGTGCTGCCAATTTTCTCGTTTTTTTCTCTTCAT 671 consensus_10593#4 ------------------------------------------------------------ consensus_10593#3 ------------------------------------------------------------ consensus_10593#0 CAAAATGCAAATAAAACAACTAACACAAGACAAAGAAAAAGAGTTCGACAAAGACGGATA 787 consensus_10593#5 ------------------------------------------------------------ consensus_10593#2 CTCGTGCCAAATTNTTGGCCTGGA------------------------------------ 727 consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 CTTTTTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAGTTTA 731 consensus_10593#4 ------------------------------------------------------------ consensus_10593#3 ------------------------------------------------------------ consensus_10593#0 CGTGGAAGTATGGCAGTAGTACTGCCACAAAATGGTCGACAAGGGGAGCTTAAAAACCAC 847 consensus_10593#5 ------------------------------------------------------------ consensus_10593#2 ------------------------------------------------------------ consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 CTTTTAGCTTTATTATAATTACTTTTCCCGTGTACCGATTTAATCGATGTTATTACCGGT 791 consensus_10593#4 ------------------------------------------------------------ consensus_10593#3 ------------------------------------------------------------ consensus_10593#0 AGCGCGATAGCGAGGAGTACAAGTTTTACAGATATACTGATGAGATGTCCTTCACAAGTT 907 consensus_10593#5 ------------------------------------------------------------ consensus_10593#2 ------------------------------------------------------------ consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 TAATGCCAATAACTTTGTTTCTTCAGTGAATTTTGATCTTTTGCTAATTGAGTTTTTATA 851 consensus_10593#4 ------------------------------------------------------------ consensus_10593#3 ------------------------------------------------------------ consensus_10593#0 GGTTCACAACCTTCAGTTGACCATCCAATCCAAAACGGAAAAAGTGGGAGCAAAAGCATT 967 consensus_10593#5 ------------------------------------------------------------ consensus_10593#2 ------------------------------------------------------------ consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 AAATGTA----------------------------------------------------- 858 consensus_10593#4 ------------------------------------------------------------ consensus_10593#3 ------------------------------------------------------------ consensus_10593#0 AGGACTGGAGACAGTAATGAACCGATTGCCAGAAATGCAGAAATGGCANAACTTAATGTA 1027 consensus_10593#5 ------------------------------------------------------------ consensus_10593#2 ------------------------------------------------------------ consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 ------------------------------------------------------------ consensus_10593#4 ------------------------------------------------------------ consensus_10593#3 ------------------------------------------------------------ consensus_10593#0 TGTGAGCATTTGAACATTTTTATTTCATCCGCTTCGGATCGTATTANAGCAGCTGCAGCA 1087 consensus_10593#5 ------------------------------------------------------------ consensus_10593#2 ------------------------------------------------------------ consensus_10593#7 ------------------------------------------------------------ consensus_10593#6 ------------------------------------------------------------ consensus_10593#1 ------ consensus_10593#4 ------ consensus_10593#3 ------ consensus_10593#0 CCGCTA 1093 consensus_10593#5 ------ consensus_10593#2 ------ consensus_10593#7 ------ consensus_10593#6 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||