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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 575 fasta sequence
[TAATATTTCATTAAAAGTTTTATAGGCATTAATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACCCGAACACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTCAACAGTATTTTCGGAGAAGAAGAATATAATCCACCTAAAGACAGTGATTTCACTGAGAGATTATGGATGTTATTCAAACATTGTTTCTTAAATTTCAAAAATCTTGCCAAAATCTTCTCCACTTAAG-AAAATGGAAAGGATTTAGTTAAAG-AAAAGATCATTGATG-AACAATAG-AATACGTTTAATATATGTTACTGAATTCTTTTTAAAGAAAAATATATTTGATA]
[+] EMBL CD186492 [TAATATTTCATTAAAAGTTTTATAGGCATTAATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCA ]
[-] EMBL CD187322 [ CATTAATAATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAACTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACCCGAACACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTTAACAGTATTTTCGGAGAAGAAGAATATAATCCACCTAAAGACAGTGATTTCACTGAGAGATTATGGATGTTATTCAAACATTGTTTCTTAAATTTCAAAAATCTTGCCAAAATCTTCTCCACTTAAG AAAATGGAAAGGATTTAGTTAA ]
[+] EMBL CD186465 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCA ]
[+] EMBL CD186481 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCA ]
[+] EMBL CD197961 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTA ]
[+] EMBL CD187402 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAA ]
[+] EMBL CD197986 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTA ]
[+] EMBL CD186420 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCA ]
[-] EMBL CD186445 [ ATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAA ]
[-] EMBL CD186415 [ ATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATANATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGGGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAA ]
[-] EMBL CD179325 [ ATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACC ]
[-] EMBL CD186378 [ ATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAA ]
[+] EMBL CD084188 [ aggAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACCCGAACACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTCAACAGTATTTTCGGAGAAGAAGAATATAATCCACCTAAAGACAGTGATTTCACTGAGAGATTATGGATGTTATTCAAACATTGTTTCTTAAATTTCAAAAATCTTGCCAAAATCTTCTCCACTTAAG AAAATGGAAAGGATTTAGTTAAAG AAAAGATCATTGATG AACAATAG AATACGTTTAATATATGTTACTGAATTCTTTTTAAAGAAAAATATATTTGATA]
[+] EMBL AI111047 [ GGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAANAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAAACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACCCGAACACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTCAACAGTATTTTCGGANAANAANAATATAATCCACCTAAAGACAGTGATTTCACTGAGAGATTATGGATGTTATTCAAACATTGTTTCTTAAATTTCAAAAATCTTGCCAAAATCTTCTCCACTTAAGAAAAATGGAAAGGATTTAGTTAAAGAAAAAGATCATTGATGAAACNATAGAAATACGTTTAATATATGTTACT ]
[+] EMBL AI110983 [ TATTCTGCATAGCCATATGCTTAATTGGAATAAATNCCGGTNCNGTTNCAAAACCTACTGCANCTGTGAAACCACNACCTGTCAATANGATGAATACTACACCAGTCCATCAAGAANAACCNTCATTTTGGANACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTA ]
[+] EMBL CD202812 [ TAATTGGAACAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCC ]
[+] EMBL CD179236 [ tcgncaCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACCCGAACACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTCAACAGTATTTTCGGAGAAGTAGAATATAATCCACCTAAAGAC ]
consensusID : consensus_10594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence
[GTCGATCTCCACCACNCAGGTTACCGTTCACGTTAGATCATGGAAACGACCCCATGATCCAGGAAACACGACAAGGACGTGTGAGTTGGGTTTTGCCTCCCATATAGTAAACAGTTAGTTTGCGAACTGTAATTCAATTGTCTCAATCTTGACTGTTCCGTCTGCGAATATCAGTCCATAGTCTCCGATTATTATTGTTCATGCAGTTTCATATCAATTGCATCCCGTTTCCGTTCTCTTCTTATAGATGTTCTATTGAAATATATTCAATGTACTACCGTCGTTTTATACTACTCATGTGGATATAAGTAACCCATACCATAGAAGGATCCTAAACTAAACACCTAAATGACTTAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAAC]
[-] EMBL CD194934 [GTCGATCTCCACCACNCAGGTTACCGTTCACGTTAGATCATGGAAACGACCCCATGATCCAGGAAACACGACAAGGACGTGTGAGTTGGGTTTTGCCTCCCATATAGTAAACAGTTAGTTTGCGAACTGTAATTCAATTGTCTCAATCTTGACTGTTCCGTCTGCGAATATCAGTCCATAGTCTCCGATTATTATTGTTCATGCAGTTTCATATCAATTGCATCCCGTTTCCGTTCTCTTCTTATAGATGTTCTATTGAAATATATTCAATGTACTACCGTCGTTTTATACTACTCATGTGGATATAAGTAACCCATACCATAGAAGGATCCTAAACTAAACACCTAAATGACTTAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10594#0 TAATATTTCATTAAAAGTTTTATAGGCATTAATTATATTCATTCAAAAATTATGAATACA 60
consensus_10594#1 ------------------------------------------------------------
consensus_10594#0 GTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTT 120
consensus_10594#1 ------GTCGATCTCCACCACNCAGGTTACCGTTCACGTTAGAT---CATGGAAACGACC 51
* * * * * * ** * * * * ** * **
consensus_10594#0 TCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTC 180
consensus_10594#1 CCATGATCCA--GGAAACACG--ACAAGGACGTGT----GAGTTGGGTTTTGCCTC---C 100
** * * * * ** * ** * ** *** ** ** * * * * *
consensus_10594#0 CATCAAGAAGAACCATCATTTTGGAGAC-GTATGTGGAATTCGTTTACTTCCATGTTTGG 239
consensus_10594#1 CATATAGTA-AACAGTTAGTTTGCGAACTGTAATTCAATTGTCTCAATCTTGACTGTTCC 159
*** ** * *** * * **** ** *** * * * * * * * **
consensus_10594#0 ATCCTCAGACAGTAGCTCTGGAAC---GAATAATAAGGATACTAAAAGTCCAAACCCGAA 296
consensus_10594#1 GTCTGCGAATATCAGTCCATAGTCTCCGATTATTATTGTTCATGCAGTTTCATATC--AA 217
** * * * ** * * ** ** ** * * * * * ** * * **
consensus_10594#0 CACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTCAACAGTAT 356
consensus_10594#1 TTGCATCCCGTTTCCGTTCTCTTCTTATAGATGTTCTATTG-AAATATATTCAAT-GTAC 275
** * * *** * * * *** **** ****** ***
consensus_10594#0 TTTCGGAGAAGAAGAATA-TAATCCACCTAAAGACAGTG-ATTTCACTGAGAGATTATGG 414
consensus_10594#1 TACCGTCGTTTTATACTACTCATGTGGATATAAGTAACCCATACCATAGAAGGATCCTAA 335
* ** * * * ** * ** ** * * ** ** ** *** *
consensus_10594#0 AT--GTTATTCAAACATTGTTTCTTAAATTTCAAAAATCTTGCCAAAATCTTCTCCACTT 472
consensus_10594#1 ACTAAACACCTAAATGACTTAACCATCATTTTGGAGACGTATGTGGAAT-TCGTTTACTT 394
* * *** * * **** * * * *** * * ****
consensus_10594#0 AAGAAAATGGAAAGGATTTAGTTAAAGAAAAGATCATTGATGAACAATA-GAATACGTTT 531
consensus_10594#1 CCATGTTTGGA-------TCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAA 447
**** * * * * * ** ** * *** **** * ****
consensus_10594#0 AATATATGTTACTGAATTCTTTTTAAAGAAAAATATATTTGATA 575
consensus_10594#1 AGTCCAAAC----------------------------------- 456
* * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||