Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 10595 cluster # 10595       Sequences # 18       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10595#0 length = 1696 sequences # 17  
consensus_10595#1 length = 524 sequences # 1  

consensusID : consensus_10595#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 1696
fasta sequence
                              [TAGCACCAATTGAGCGTTACATACTTGGTAATGGTAGAATAGAACGAAAACTAACAAAACATGAGTGCCGCTATTTGAATTCGTATATGCAATCAACTACCACTTGTGATATATCGACAACTTTTTCAAATATTGATCATTATCCAAAACGATTTGATGATACAAATTTGAGTCAGCTACCCGGCAGCAGCTGCTATTCTCATAAAACAACTATTCCGAGTTGCGATAGTGGAATTGTTTACAGTAATCTGGACTACACATTGTCTCCTGGATATAAATTTCGATCTGGCTGGACATCGGTGGATCTAGCACTTCGATTCTGTCGTACGGATTTAATCAACTTATTTATT-CTTTAATTGGCCTACAAGCTACTAGTAGCGCTATATCTGTTGGTTCTGGATCGAAGCATTCCACACTACCTATGAATTCGTCGAGTACCACCTCGGTCATTACTTCATCGAATAGTACTACCATTGCAACGAACGTCTCAATGTCCGTTACAACTTCAAATACTTTTTCTCTTTCAAGCAATAATCTGCGTAACTCCACATTGAATCCTTCATTTCAAGATACTCAGCAAACTCACAGTAGAAACATTCAAGTAAATCGTAAATTAAGCAGTCCACTGACAGGAAATCAAATACATCCCTCACTTCAATTAATTTTGAATCGAACACCAG-GTAATATAAATAAGACTCAAGTCACTAGAAGTAAGTGGATGCCGTGTCAAGCTAGCCCTCATATTGCTGGCGAATTAC-GAGA-TC-TATTAGCAA-AAA-CGGTAAAACACTGTAAAGGAGACTTTCCATGCGC-TTA-TTTTTCTG-AATGGGGAACTTTTGCTTTGCC-TTA-TTC-AATTAC-AAAATTCCCTGCTCCA-G-T-AAAAC-AATTGCTCTTGTCGGAATTATGCG-ATATGCAAGCTCAATCAGAGTTGGAAG-ATGAGGCTAAAGCAATCAATTGGTGG-TTTATCCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGG-TGATTGTCTGCTAGATAGCG-TCTTACAGGCTTGTTGGGGAGTATTTGACAG-AGAAAATTGTCTACGTCGCACACTTGCTGAAAGTCTTCAAAATTGTGAAGCAAATTTTTATCCACGCTGGCGCGACTATGAAGCATTACAAGCTGCATGTCATTATATCTTAGATGAAGATCAATGCCAAAGGGATTGGGAAAATGTACTTACAGCGGCATGTCAACCACGTGAAGCTTTCGAACAAATCCATATATTCGCTTTAAGTCATGTCCTTCGCCGACCAATTATTGTCTATGGTGTAAAGTACATAAAAAATTATCGCGGTGAACCAATAGGGATAGCTAATTTTCAAGGTATTTATCTTCCACTTCTCTGGGAAAAATGCTCTTGTTCTCGGAATCCCATTGTTTTGGGCTTTACGCGAGGTCATTTTACTGCACTTGTACCCATTGAACCGTGTCCCTTATCCTCGAGTGGTGTATGCAGTGAATCAACTGCAGATACCAACCAAACAACTGGAGTTACCTTTTCACCGTATGCTTCTCCTCGTACATCTTCACGTAGACATAGTCCTACACCTCTGGATGAAACAAGTAATTATACTCAAGTGCCACTCACTACTGTTCCTCCATCAACATCTCTTTCAGAAACGCAACTAGTTTCTTCAACAGAGTCATCGTTAACCAGC]

[-] EMBL CD114590             [TAGCACCAATTGAGCGTTACATACTTGGTAATGGTAGAATAGAACGAAAACTAACAAAACATGAGTGCCGCTATTTGAATTCGTATATGCAATCAACTACCACTTGTGATATATCGACAACTTTTTCAAATATTGATCATTATCCAAAACGATTTGATGATACAAATTTGAGTCAGCTACCCGGCAGCAGCTGCTATTCTCATAAAACAACTATTCCGAGTTGCGATAGTGGAATTGTTTACAGTAATCTGGACTACACATTGTCTCCTGGATATAAATTTCGATCTGGCTGGACATCGGTGGATCTAGCACTTCGATTCTGTCGTACGGATTTAATCAACTTATTTATTGCTTTAATTGGCCTACAAGCTACTAGTAGCGCTATATCTGTTGGTTCTGGATCGAAGCATTCCACACTACCTATGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD159162             [                                                                                                                                                                                                                                                                                                                                          ATTTAATCAACTTATTTATT CTTTAATTGGCCTACAAGCTACTAGTAGCGCTATATCTGTTGGTTCTGGATCGAAGCATTCCACACTACCTATGAATTCGTCGAGTACCACCTCGGTCATTACTTCATCGAATAGTACTACCATTGCAACGAACGTCTCAATGTCCGTTACAACTTCAAATACTTTTTCTCTTTCAAGCAATAATCTGCGTAACTCCACATTGAATCCTTCATTTCAAGATACTCAGCAAACTCACAGTAGAAACATTCAAGTAAATCGTAAATTAAGCAGTCCACTGACAGGAAATCAAATACATCCCTCACTTCAATTAATTTTGAATCGAACACCAG GTAATATAAATAAGACTCAAGTCACTAGAAGTAAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD116134             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGTCTCAATGTCCGTTACAACTTCAAATACTTTTTCTCTTTCAAGCAATAATCTGCGTAACTCCACATTGAATCCTTCATTTCAAGATACTCAGCAAACTCACAGTAGAAACATTCAAGTAAATCGTAAATTAAGCAGTCCACTGACAGGAAATCAAATACATCCCTCACTTCAATTAATTTTGAATCGAACACCAG GTAATATAAATAAGACTCAAGTCACTAGAAGTAAGTGGATGCCGTGTCAAGCTAGCCCTCATATTGCTGGCGAATTAC GAGA TC TATTAGCAA AAA CGGTAAAACACTGTAAAGGAGACTTTCCATGCGC TTA TTTTTCTG AATGGGGAACTTTTGCTTTGCC TTA TTC AATTAC AAAATTCCCTGCTCCA G T AAAAC AATTGCTCTTGTCGGAATTATGCG ATATGCAAGCTCAATCAGAGTTGGAAG ATGAGGCTAAAGCAATCAATTGGTGG TTTATCCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGG TGATTGTCTGCTAGATAGCG TCTTACAGGCTTGNTGNGGAGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD160618             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGAAACATTCAAGTAAATCGTAAATTAAGCAGTCCACTGACAGGAAATCAAATACATCCCTCACTTCAATTAATTTTGAATCGAACATCAG GTAATATAAATAAGACTCAAGTCACTAGAAGTAAGTGGATGCCGTGTCAAGCTAGCCCTCATATTGCTGGCGAATTAC GAGA TC TATTAGCAA AAA CGGTAAAACACTGTAAAGGAGACTTTCCATGCGC TTA TTTTTCTG AATGGGGAACTTTTGCTTTGCC TTA TTC AATTAC AAAATTCCCTGCTCCA G T AAAAC AATTGCTCTTGTCGGAATTATGCG ATATGCAAGCTCAATCAGAGTTGGAAG ATGAGGCTAAAGCAATCAATTGGTGG TTTATCCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD114708             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gTTAATTTTGAATCGAACACCAGAGTAATATAAATAAGACTCACGTCACTAGAAGTAAGTGGATGCCGTGTCAAGCTAGCCCTCATATTGCTGGCGAATTACTGAGA TC TATTATCAATAAA CGGTAAAACACTGTATAGGAGACTTTCCATGCGC TTA TTCTTCTG AATGGGGAACTTTTGCTTTGCC TTA TTC AATTAC AAAATTCCCTGCTCCA G T AAAAC AATTGCTCTTGTCGGAATTATGCG ATATGCAAGCTCAATCAGAGTTGGAAG ATGAGGCTAAAGCAATCAATTGGTGG TTTATCCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGGTTAATTGTCTGCTAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD114649             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AATTTTGAATCGAACACCAG GTAATATAAATAAGACTCAAGTCACTAGAAGTAAGTGGATGCCGTGTCAAGCTAGCCCTCATATTGCTGGCGAATTAT GAGA TC TATTAGCAA AAA CGGTAAAACACTGTAAAGGAGACTTTCCATGCGC TTA TTTTTCTG AATGGGGAACTTTTGCTTTGCC TTA TTC AATTAC AAAATTCCCTGCTCCA G T AAAAC AATTGCTCTTGTCGGAATTATGCG ATATGCAAGCTCAATCAGAGTTGGAAG ATGAGGCTAAAGCAATCAATTGGTGG TTTATCCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGG TGATTGTCTGCTAGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD114841             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AATTTTGAATCGAACACCAG GTAATATAAATAAGACTCAAGTCACTAGAAGTAAGTGGATGCCGTGTCAAGCTAGCCCTCATATTGCTGGCAAATTAC GAGA TC TATTAGCAT AAA CGGTAAAACACTGTAAAGGAGACTTTCCATGCGC TTA TTTTTCTG AATGGGGAACTTTTGCTTTGCC TTA TTC AATTAC AAAATTCCCTGCTCCA G T AAAAC AATTGCTCTTGTCGGAATTATGCG ATATGCAAGCTCAATCAGAGTTGGAAG ATGAGGCTAAAGCAATCAATTGGTGG TTTATTCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGG TGATTGTCTGCTAGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD162909             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TAAATAAGACTCAAGTCACTAGAAGTAAGTGGATGCCGTGTCAAGCTAGCCCTCATATTGCTGGCGAATTAC GAGA TC TATTAGCAA AAA CGGTAAAACACTGTAAAGGAGACTTTCCATGCGC TTA TTTTTCTG AATGGGGAACTTTTGCTTTGCC TTA TTC AATTAC AAAATTCCCTGCTCCA G T AAAAC AATTGCTCTTGTCGGAATTATGCG ATATGCAAGCTCAATCAGAGTTGGAAG ATGAGGCTAAAGCAATCAATTGGTGG TTTATCCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGG TGATTGTCTGCTAGATAGCG TCTTACAGGCTTGTTGGGGAGTATTTGACAG AGAAAATTGTCTACGTCGCACACTTGCTGAAAGTCTTCAAAATTGTGAAGCAAATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD162725             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TAAATAAGACTCAAGTCACTAGAAGTAAGTGGATGCCGTGTCAAGCTAGCCCTCATATTGCTGGCGAATTAC GAGA TC TATTAGCAA AAA CGGTAAAACACTGTAAAGGAGACTTTCCATGCGC TTA TTTTTCTG AATGGGGAACTTTTGCTTTGCC TTA TTC AATTAC AAAATTCCCTGCTCCA G T AAAAC AATTGCTCTTGTCGGAATTATGCG ATATGCAAGCTCAATCAGAGTTGGAAG ATGAGGCTAAAGCAATCAATTGGTGG TTTATCCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGG TGATTGTCTGCTAGATAGCG TCTTACAGGCTTGTTGGGGAGTATTTGACAG AGAAAATTGTCTACGTCGCACACTTGCTGAAAGTCTTCAAAATTGTGAAGCAAATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD120007             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGAATTAC GAGACTC TATTAGCAA AAA CGGTAAAACACTGTAAAGGAGACTTTCCATGCGC TTA TTTTTCTG AATGGGGAACTTTTGCTTTGCC TTACTTCAAATTACAAAAATTCCCTGCTCCA G TAAAAACAAATTGCTCTTGTCGGAATTATGCGAATATGCAAGCTCAATCAGAGTTGGAAGAATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD120463             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AATTAC GAGA TC TATTAGCAA AAA CGGTAAAACACTGTAAAGGAGACTTTCCATGCGC TTA TTTTTCTG AATGGGGAACTTTTGCTTTGCC TTA TTC AATTAC AAAGTTCCCTGCTCCA G T AAAAC AATTGCTGTTGTCGGAATTATGCG ATATGCAAGCTCAATCAGAGTTGGAAG ATGAGGCTAAAGCAATCAATTGGTGG TTTATCCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGG TGATTGTCTGCTAGATAGCG TCTTACAGGCTTGTTGGGGAGTATTTGACAG AGAAAATTGTCTACGTCGCACACTTGCTGAAAGTCTTCAAAATTGTGAAGCAAATTTTTATCCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD158278             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATTAC GAGA TC TATTAGCAA AAA CGGTAAAACACTGTAAAGGAGACTTTCCATGCGC TTA TTTTTCTG AATGGGGAACTTTTGCTTTGCC TTA TTC AATTAC AAAATTCCCTGCTCCA G T AAAAC AATTGCTCTTGTCGGAATTATGCG ATATGCAAGCTCAATCAGAGTTGGAAG ATGAGGCTAAAGCAATCAATTGGTGG TTTATCCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGG TGATTGTCTGCTAGATAGCG TCTTACAGGCTTGTTGGGGAGTATTTGACAG AGAAAATTGTCTACGTCGCACACTTGCTGAAAGTCTTCAAAATTGTGAAGCAAATTTTTATCCACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD120037             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATTAC GAGATTCTTATTAGCAA AAA CGGTAAAACACTGTAAAGGAGACTTTCCATGCGCTTTATTTTTTCTGAAATGGGGAACTTTTGCTTTGCCTTTA TTC AATTAC AAAATTCCCTGCTCCA GTT AAAAC AATTGCTCTTGTCGGAATTATGCG ATATGCAAGCTCAATCAGAGTTGGAAG ATGAGGCTAAAGCAATCAATTGGTGGTTTTATCCCTGGACAAAAGCAATCGAGTCGTCCATTTGCCTTGTGGAATCGAACAGCAGG TGATTGTCTGCTAGATAGCGTTCTTACAGGCTTGTTGGGGAGTATTTGACAG AGAAAATTGTCTACGTCGCACACTTGCTGAAAGTCTTCAAAATTGTGAAGCAAATTTTTATCCACGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD120236             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  atTTTC GAGA TC TATTAGCAA AAAGCGGTAAAACGCTGTAAAGGAGACTTTCCATGCGC TTA GTTGTCTG AATGGGGAACTTTTGCTTTGCG TTA TTC AAGTAC AAAATTCCGTGTTCCAGG T AAAAC AATTGCTCTTGTCGGAATTATGCG ATATGCAAGCTCAATCAGAGTTGGAAG ATGAGGCTAAAGCAATCAATGGGTGG TTTATCCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGG TGATTGTTTGCTAGATAGCG TCTTTCAGGCTTGTTGGGGAGTATTTGTCAG AGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD091456             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGG TGATTGTCTGCTAGATAGCG TCTTACAGGCTTGTTGGGGAGTATTTGACAG AGAAAATTGTCTACGTCGCACACTTGCTGAAAGTCTTCAAAATTGTGAAGCAAATTTTTATCCACGCTGGCGCGACTATGAAGCATTACAAGCTGCATGTCATTATATCTTAGATGAAGATCAATGCCAAAGGGATTGGGAAAATGTACTTACAGCGGCATGTCAACCACGTGAAGCTTTCGAACAAATCCATATATTCGCTTT                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD127364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAGAAAAAAATTGTCTACGTCGCACACTTGCTGAAAGTCTTCAAAATTGTGAAGCAAATTTTTATCCACGCTGGCGCGACTATGAAGCATTACAAGCTGCATGTCATTATATCTTAGATGAAGATCAATGCCAAAGGGATTGGGAAAATGTACTTACAGCGGCATGTCAACCACGTGAAGCTTTAGAACAAATCCATATATTCGCTTTAAGTCATGTCCTTCGCCGACCAATTATTGTCTATGGTGTAAAGTACATAAAAAATTATCGCGGTGAACCAATAGGGATAGCTAATTTTCAAGGTATTTATCTTCCACTTCTCTGGGAAAAATGCTCTTGTTCTCGGAATCCCATTGTTTTGGGCTTTACGCGAGGTCATTTTACTGCACTTGTACCCATTGAACCGTGTCCCTTATCCTCGAGTGGTGTATGCAGTGAATCAACTGCAGATACCAACCAAACAACTGGAGTTACCTTTTCACCGTATGCTTCTCCTCGTACATCTTCACGTAGACATAGTCCTACACCTCTGGATGAAACAAGTAATTATACTCAAGTGCCACTCACTACTGTTCCTCCATCAACATCTCTTTCAGAAACGCAACTAGTTTCTTCAACAGAGTCATCGTTAACCAGC]
[-] EMBL CD164500             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CATTGTTTTGGGCTTTACGCGAGGTCATTTTACTGCACTTGTACCCATTGAACCGTGTCCCTTATCCTCGAGTGGTGTATGCAGTGAATCAACTGCAGATACCAACCATACAACTGGAGTTACCTTTTCACCGTATGCTTCTCCTCGTACATCTTCACGTAGACATAGTCCTACACCTCTGGATGAAACAAGTAATTATACTCAAGTGCCca                                                                          ]


>consensus_10595#0 TAGCACCAATTGAGCGTTACATACTTGGTAATGGTAGAATAGAACGAAAACTAACAAAAC ATGAGTGCCGCTATTTGAATTCGTATATGCAATCAACTACCACTTGTGATATATCGACAA CTTTTTCAAATATTGATCATTATCCAAAACGATTTGATGATACAAATTTGAGTCAGCTAC CCGGCAGCAGCTGCTATTCTCATAAAACAACTATTCCGAGTTGCGATAGTGGAATTGTTT ACAGTAATCTGGACTACACATTGTCTCCTGGATATAAATTTCGATCTGGCTGGACATCGG TGGATCTAGCACTTCGATTCTGTCGTACGGATTTAATCAACTTATTTATTCTTTAATTGG CCTACAAGCTACTAGTAGCGCTATATCTGTTGGTTCTGGATCGAAGCATTCCACACTACC TATGAATTCGTCGAGTACCACCTCGGTCATTACTTCATCGAATAGTACTACCATTGCAAC GAACGTCTCAATGTCCGTTACAACTTCAAATACTTTTTCTCTTTCAAGCAATAATCTGCG TAACTCCACATTGAATCCTTCATTTCAAGATACTCAGCAAACTCACAGTAGAAACATTCA AGTAAATCGTAAATTAAGCAGTCCACTGACAGGAAATCAAATACATCCCTCACTTCAATT AATTTTGAATCGAACACCAGGTAATATAAATAAGACTCAAGTCACTAGAAGTAAGTGGAT GCCGTGTCAAGCTAGCCCTCATATTGCTGGCGAATTACGAGATCTATTAGCAAAAACGGT AAAACACTGTAAAGGAGACTTTCCATGCGCTTATTTTTCTGAATGGGGAACTTTTGCTTT GCCTTATTCAATTACAAAATTCCCTGCTCCAGTAAAACAATTGCTCTTGTCGGAATTATG CGATATGCAAGCTCAATCAGAGTTGGAAGATGAGGCTAAAGCAATCAATTGGTGGTTTAT CCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGGTGATTG TCTGCTAGATAGCGTCTTACAGGCTTGTTGGGGAGTATTTGACAGAGAAAATTGTCTACG TCGCACACTTGCTGAAAGTCTTCAAAATTGTGAAGCAAATTTTTATCCACGCTGGCGCGA CTATGAAGCATTACAAGCTGCATGTCATTATATCTTAGATGAAGATCAATGCCAAAGGGA TTGGGAAAATGTACTTACAGCGGCATGTCAACCACGTGAAGCTTTCGAACAAATCCATAT ATTCGCTTTAAGTCATGTCCTTCGCCGACCAATTATTGTCTATGGTGTAAAGTACATAAA AAATTATCGCGGTGAACCAATAGGGATAGCTAATTTTCAAGGTATTTATCTTCCACTTCT CTGGGAAAAATGCTCTTGTTCTCGGAATCCCATTGTTTTGGGCTTTACGCGAGGTCATTT TACTGCACTTGTACCCATTGAACCGTGTCCCTTATCCTCGAGTGGTGTATGCAGTGAATC AACTGCAGATACCAACCAAACAACTGGAGTTACCTTTTCACCGTATGCTTCTCCTCGTAC ATCTTCACGTAGACATAGTCCTACACCTCTGGATGAAACAAGTAATTATACTCAAGTGCC ACTCACTACTGTTCCTCCATCAACATCTCTTTCAGAAACGCAACTAGTTTCTTCAACAGA GTCATCGTTAACCAGC



consensusID : consensus_10595#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence
                              [CACTATACATATACTGTCATGTGATATTGATGTACTATCAGGGATTTTTTTTCTAAGTCCAATGGTTTACTATACTATCTGACATTTAAATTATGATATTTATTGTAAATTAATATCTGGAAAGGAATTCAATAAGAGAAAGCATCGGAATGAAGTTGAAAATATCGAACATTTTATTCGGATGTGGTGGTCTAATGGTATTGTATCGGCCCAGTGGTGAAGAGTTGTATTTGTGCATTACTGAATTGAGTAGTAGTTGTACGCCAAAATAAAACAGTCGTGCAATAGTCCTCCGTGATTTTCATCATCTTTCATCAATGCATAGTTAAATCACTTTTAAACTATAAAATATATGTATGAAGCCTCCTGATTTAACGAGTCGTTAATGTTTGTTTCATCTGTTGTTAAAAATATTCATTTATAAACATGATTGCTGTATTTTCAAATTATTTCTAGGTATATATCTTCCACTTCTCTGGGAAAAATGCTCTTGTTCTCGGAATCCCATCGTTTTGGGCTTTACG]

[+] EMBL AI976982             [CACTATACATATACTGTCATGTGATATTGATGTACTATCAGGGATTTTTTTTCTAAGTCCAATGGTTTACTATACTATCTGACATTTAAATTATGATATTTATTGTAAATTAATATCTGGAAAGGAATTCAATAAGAGAAAGCATCGGAATGAAGTTGAAAATATCGAACATTTTATTCGGATGTGGTGGTCTAATGGTATTGTATCGGCCCAGTGGTGAAGAGTTGTATTTGTGCATTACTGAATTGAGTAGTAGTTGTACGCCAAAATAAAACAGTCGTGCAATAGTCCTCCGTGATTTTCATCATCTTTCATCAATGCATAGTTAAATCACTTTTAAACTATAAAATATATGTATGAAGCCTCCTGATTTAACGAGTCGTTAATGTTTGTTTCATCTGTTGTTAAAAATATTCATTTATAAACATGATTGCTGTATTTTCAAATTATTTCTAGGTATATATCTTCCACTTCTCTGGGAAAAATGCTCTTGTTCTCGGAATCCCATCGTTTTGGGCTTTACG]


>consensus_10595#1 CACTATACATATACTGTCATGTGATATTGATGTACTATCAGGGATTTTTTTTCTAAGTCC AATGGTTTACTATACTATCTGACATTTAAATTATGATATTTATTGTAAATTAATATCTGG AAAGGAATTCAATAAGAGAAAGCATCGGAATGAAGTTGAAAATATCGAACATTTTATTCG GATGTGGTGGTCTAATGGTATTGTATCGGCCCAGTGGTGAAGAGTTGTATTTGTGCATTA CTGAATTGAGTAGTAGTTGTACGCCAAAATAAAACAGTCGTGCAATAGTCCTCCGTGATT TTCATCATCTTTCATCAATGCATAGTTAAATCACTTTTAAACTATAAAATATATGTATGA AGCCTCCTGATTTAACGAGTCGTTAATGTTTGTTTCATCTGTTGTTAAAAATATTCATTT ATAAACATGATTGCTGTATTTTCAAATTATTTCTAGGTATATATCTTCCACTTCTCTGGG AAAAATGCTCTTGTTCTCGGAATCCCATCGTTTTGGGCTTTACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10595#0      TAGCACCAATTGAGCGTTACATACTTGGTAATGGTAGAATAGAACGAAAACTAACAAAAC 60
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      ATGAGTGCCGCTATTTGAATTCGTATATGCAATCAACTACCACTTGTGATATATCGACAA 120
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      CTTTTTCAAATATTGATCATTATCCAAAACGATTTGATGATACAAATTTGAGTCAGCTAC 180
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      CCGGCAGCAGCTGCTATTCTCATAAAACAACTATTCCGAGTTGCGATAGTGGAATTGTTT 240
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      ACAGTAATCTGGACTACACATTGTCTCCTGGATATAAATTTCGATCTGGCTGGACATCGG 300
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      TGGATCTAGCACTTCGATTCTGTCGTACGGATTTAATCAACTTATTTATTCTTTAATTGG 360
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      CCTACAAGCTACTAGTAGCGCTATATCTGTTGGTTCTGGATCGAAGCATTCCACACTACC 420
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      TATGAATTCGTCGAGTACCACCTCGGTCATTACTTCATCGAATAGTACTACCATTGCAAC 480
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      GAACGTCTCAATGTCCGTTACAACTTCAAATACTTTTTCTCTTTCAAGCAATAATCTGCG 540
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      TAACTCCACATTGAATCCTTCATTTCAAGATACTCAGCAAACTCACAGTAGAAACATTCA 600
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      AGTAAATCGTAAATTAAGCAGTCCACTGACAGGAAATCAAATACATCCCTCACTTCAATT 660
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      AATTTTGAATCGAACACCAGGTAATATAAATAAGACTCAAGTCACTAGAAGTAAGTGGAT 720
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      GCCGTGTCAAGCTAGCCCTCATATTGCTGGCGAATTACGAGATCTATTAGCAAAAACGGT 780
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      AAAACACTGTAAAGGAGACTTTCCATGCGCTTATTTTTCTGAATGGGGAACTTTTGCTTT 840
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      GCCTTATTCAATTACAAAATTCCCTGCTCCAGTAAAACAATTGCTCTTGTCGGAATTATG 900
consensus_10595#1      --------------------------------------CACTATACATAT-ACTGTCATG 21
                                                              * *   * * *     * ***

consensus_10595#0      CGATATGCAAGCTCAATCAGAGTTGGAAGATGAGGCTAAAGCAATCAATTGGTGGTTTAT 960
consensus_10595#1      TGATATTGATGTACTATCAG----GGATTTTTTTTCTAAGTCCAATGGTT--TACTATAC 75
                        *****  * *  * *****    ***   *    ****  * *    **  *  * ** 

consensus_10595#0      CCCTGGACAAAAGCAATCGAGTCGTCTATTTGCCTTGTGGAATCGAACAGCAGGTGATTG 1020
consensus_10595#1      TATCTGACATTTA-AATTATGATATTTATT-GTAAATTAATATC---TGGAAAGGAATTC 130
                            ****     ***   *   * **** *     *   ***     * * *  *** 

consensus_10595#0      TCTGCTAGATAGCGTCTTACAGGCTTGTTGGGGAGTATTTGACAGAGAAAATTGTCTACG 1080
consensus_10595#1      AATAAGAGAAAGCATCGGAATGA---AGTTGAAAATATCGAACATTTTA---TTCGGATG 184
                         *   *** *** **  *  *      * *  * ***   ***    *   *    * *

consensus_10595#0      TCGCACACTTGCTGAAAGTCTTCAAAATTGTGAAGCAAATTTTTATCCACGCTGGCGCGA 1140
consensus_10595#1      TGGTGGTCTAATGGTATTGTATCGGCCCAGTGGTGAAGAGTTGTATTTGTGCATTACTGA 244
                       * *    **    * *     **      ***  * * * ** ***    **      **

consensus_10595#0      CTATGAAGCATTACAAGCTGCATGTCATTATATCTTAGATGAAGATCAATGCCAAAGGGA 1200
consensus_10595#1      --ATTGAGTAGT---AGTTGTACGCCAAAATAAAACAGTCGTGCAATAGT-CCTCCGTGA 298
                         **  ** * *   ** ** * * **  ***    **  *   *  * * **   * **

consensus_10595#0      TTGGGAAAATGTACTTACAGCGGCATGTCAACCACGTGAAGCTTTCGAACAAATCCATAT 1260
consensus_10595#1      TTTTCATCAT---CTTTCATCAATGCAT-AGTTAAATCA--CTTTTAAACTA--TAAAAT 350
                       **   *  **   *** ** *      * *   *  * *  ****  *** *    * **

consensus_10595#0      ATTCGCTTTAAGTCATGTCCTTCGCCGACCAATTATTGTCTATGGTGTAAAGTACATAAA 1320
consensus_10595#1      ATATGTATGAAGCCTCCTGATTTAACGAGTCGTTAATGTTTGTTTCATCTGTTGTTAAAA 410
                       **  *  * *** *   *  **   ***    *** *** * *    *    *    ***

consensus_10595#0      AAATTATCGCGGTGAACCAATAGGGATAGCT---AATT--TTCAAGGTATTTATCTTCCA 1375
consensus_10595#1      ATATTCATTTATAAACATGATTGCTGTATTTTCAAATTATTTCTAGGTATATATCTTCCA 470
                       * ***         *    ** *   **  *   ****  *** ****** *********

consensus_10595#0      CTTCTCTGGGAAAAATGCTCTTGTTCTCGGAATCCCATTGTTTTGGGCTTTACGCGAGGT 1435
consensus_10595#1      CTTCTCTGGGAAAAATGCTCTTGTTCTCGGAATCCCATCGTTTTGGGCTTTACG------ 524
                       ************************************** ***************      

consensus_10595#0      CATTTTACTGCACTTGTACCCATTGAACCGTGTCCCTTATCCTCGAGTGGTGTATGCAGT 1495
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      GAATCAACTGCAGATACCAACCAAACAACTGGAGTTACCTTTTCACCGTATGCTTCTCCT 1555
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      CGTACATCTTCACGTAGACATAGTCCTACACCTCTGGATGAAACAAGTAATTATACTCAA 1615
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      GTGCCACTCACTACTGTTCCTCCATCAACATCTCTTTCAGAAACGCAACTAGTTTCTTCA 1675
consensus_10595#1      ------------------------------------------------------------
                                                                                   

consensus_10595#0      ACAGAGTCATCGTTAACCAGC 1696
consensus_10595#1      ---------------------
                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)