These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 644 fasta sequence [GGGCCAGAATTCGGCACGAGGAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAGTTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGCTGGATTTNTTGAAAAAAAAAAAAA] [+] EMBL CD079919 [GGGCCAGAATTCGGCACGAGGAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAGTTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGnct ] [-] EMBL CD074116 [ CTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGCTG ] [-] EMBL AI395656 [ CTAAGGGAG ATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTTTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGCTGGATTTNTTGAAAAAAAAAAAAA] consensusID : consensus_10603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 623 fasta sequence [TTGAAGGTCACGTACACGTAAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG-TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA-TGAAAAAGGTGTAACGGCCTACCTG-AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCT-ANAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGCTAAAA] [+] EMBL AW017444 [TTGAAGGTCACGTACACGTAAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATAC ] [+] EMBL CD078456 [ GTCACGTACACGTAAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCT ANAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGCT ] [-] EMBL CD128163 [ ACGTACACGTAAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGT ] [+] EMBL AI110959 [ CGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACNAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTA ] [+] EMBL AI111060 [ CGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACNAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTNTCGTTCGTCTTCAATCACAAANATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTGAAGATCTTTG ] [+] EMBL AI111051 [ CGCGATGAACTGGGCCTTGGTTAGTTNCCTGAGCGTGTTTGTAAAGCTNGCCCTTTCTTGTGACNAGTTTGACNTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCNCTNAAACCGTNATTTT ] [+] EMBL AI110947 [ CGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACNAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATC ] [+] EMBL AI976581 [ GCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGCTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTTAACCAGCTGC ] [+] EMBL SMAA28864 [ GTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGACG AGTTTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTG AACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG ATATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTC ] [-] EMBL CD147978 [ GAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCG ] [-] EMBL CD147989 [ GAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCG ] [+] EMBL SMAA69231 [ GCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAG AG TTCTTTGCACTGAAACCGTAATTTTCAANGAAGGCGAAG CAAGT ] [-] EMBL AI395457 [ GTCATATTGAAACTG CCATTTTCAAGT TTGTTCGTCTTCAATCACAAAGAT TGCCTAAGGGAGAA ATGTTGTCCGGTTTTATAATTGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTTTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAAaaaaaaaaaaa] [+] EMBL BG932562 [ AGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCT ] [-] EMBL CD116643 [ GTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10603#0 GGGCCAGAATTCGGCACGAG-GAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAG 59 consensus_10603#1 --TTGAAGGTCACGTACACGTAAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAG 58 * * * ** * ************************************** consensus_10603#0 CGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTC 119 consensus_10603#1 CGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTC 118 ************************************************************ consensus_10603#0 TTCAAGCGAAGCAGTTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTG 179 consensus_10603#1 TTCAAGCGAAGCAGTTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTG 178 ************************************************************ consensus_10603#0 TAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGC 239 consensus_10603#1 TAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGC 238 ************************************************************ consensus_10603#0 TCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCC 299 consensus_10603#1 TCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCC 298 ************************************************************ consensus_10603#0 TAAGGGAGAATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATC 359 consensus_10603#1 TAAGGGAGAATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATC 358 ************************************************************ consensus_10603#0 TTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAA 419 consensus_10603#1 TTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAA 418 ************************************************************ consensus_10603#0 AGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTT 479 consensus_10603#1 AGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTT 478 ************************************************************ consensus_10603#0 AATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAA 539 consensus_10603#1 AATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAA 538 ************************************************************ consensus_10603#0 GTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAA 599 consensus_10603#1 GTATTTCACTATACATGTACATTGTTTTCCTCCCTANA-GCCTTTGTATAGTACTTATAA 597 ************************************ * ********************* consensus_10603#0 ACTTTCGTTCATAAATGTTGCTGGATTTNTTGAAAAAAAAAAAAA 644 consensus_10603#1 ACTTTCGTTCATAAATGTTGCTAAAA------------------- 623 ********************** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||