These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1221 fasta sequence [TAGTTCCGATTGTCCGTAAAGTTCAGACATGCAAGGTGTTGCAGCATCTGTTACTGATACTCTTGGAAATCTCAAACCATGGCTTCAGAAAGTAACAGCTCAATCCAAACCCACTGATGCTCGGTACTCCACGACAACGAAAAAAGGTGAAATTTTTGAGCTGAAAGCTGAATTGAATAGTGAGCGAAGAGAAAAAAAGAAGGAGGCTGTTAAAAAGGTCATAGCCAGTATGACTGTAGGTAAAGACGCTAGTGCTTTGTTTCCAGATGTAATCAACTGTATGCAAACAGACAATTTGGAACTAAAAAAGCTAGTATACCTGTATCTTATGAATTATGCCAAAACACAGCCAGATACTGCAATAATGGCTGTGAATACCTTTGTAAAAGATTGCGATGAT-CCCAATCCACTTATCAGAGCGCTTGCTGTGCGAACAATGGGCTGCATACGTGTGGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG-AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTAAAGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACTGCATCGACTGTGATTAGAAAGTTGGCGCCCCCACTAGTAACATTACTTTCTGCGGAACCGGAAATTCAGTATGTCGCTCTGCGCAATATTAACTTAATTGTTCAAAAGCGTAGAGATATTTTAAAGCAGGAGATAAAAGTATTTTTTGTCAAGTATAATGACCCGATCTATGTGAAACTTGAGAAACTAGATATAATGATACGTCTCATTAACCAGTCTAACATTGGTCAGGTGCTTGCTGAACTGAAGGAATACGCAAAAGAAGTTGACGTGGA] [+] EMBL CD147187 [TAGTTCCGATTGTCCGTAAAGTTCAGACATGCAAGGTGTTGCAGCATCTGTTACTGATACTCTTGGAAATCTCAAACCATGGCTTCAGAAAGTAACAGCTCAATCCAAACCCACTGATGCTCGGTACTCCACGACAACGAAAAAAGGTGAAATTTTTGAGCTGAAAGCTGAATTGAATAGTGAGCGAAGAGAAAAAAAGAAGGAGGCTGTTAAAAAGGTCATAGCCAGTATGACTGTAGGTAAAGACGCTAGTGCTTTGTTTCCAGATGTAATCAACTGTATGCAAACAGACAATTTGGAACTAAAAAAGCTAGTATACCTGTATCTTATGAATTATGCCAAAACACAGCCAGATACTGCAATAATGGCTGTGAATACCTTTGTAAAAGATTGCGATGAT CCCAATCCACTTATCAGAGCGCTTGCTGTGCGAACAATGGGCTGCATACGTGTGGAGAAAATAAC ] [+] EMBL CD139893 [ GGTGAAATTTTTGAGCTGAAAGCTGAATTGAATAGTGAGCGAAGAGAAAAAAAGAAGGAGGCTGTTAAAAAGGTCATAGCCAGTATGACTGTAGGTAAAGACGATAGTGCTTTGTTTCCAGATGTAATCAACTGTATGCAAACAGACAATTTGGAACTAAAAAAGCTAGTATACCTGTATCTTATGAATTATGCCAAAACACAGCCAGATACTGCAATAATGGCTGTGAATACCTTTGTAAAAGATTGCGATGAT CCCAATCCACTTATCAGAGCGCTTGCTGTGCGAACAATGNGCTGCATACGTGTGGA ] [-] EMBL CD146795 [ GCGATGATCCCCAATCCACTANTCAGAGCGCTTGCTGTGCGAACAATGGGCTGCATACGTGTGGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTAAAGTCATTATGAAAATGTTGGA ] [+] EMBL CD196085 [ CTGTGCGAACAATGGGCTGCATACGTGTGGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAAACAACTCCCTACAGCTNCTAATGAA ] [+] EMBL CD196119 [ CTGTGCGAACAATGGGCTGCATACGTGTGGAGAAATTAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTGGTCGCTAATGCTGTCGCATNCATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTNAGTCCCTACTCG ] [-] EMBL CD139940 [ GTGTGGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAAC ] [+] EMBL CD180243 [ gnGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGGCAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAAC ] [+] EMBL CD180237 [ gnGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGGCAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAAC ] [+] EMBL CD186175 [ CCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCG ] [+] EMBL CD186109 [ CCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCG ] [+] EMBL CD084284 [ GTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTAAAGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACTGCATCGACTGTGATTAGAAAGTTGGCGCCCCCACTAGTAACATTACTTTCTGCGGAACCGGAAATTCAGTATGTCGCTCTGCGCAATATTAACTTAATTGTTCAAAAGCGTAGAGATATTTTAAAGCAGGAG ] [-] EMBL CD196102 [ AGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGANCTTTTG AGGGATTTGTTGTGTGACAGTAACCCNATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTA ] [+] EMBL CD179575 [ TGTGTAGCACACCTGCATGATATATATGCTCAGTTACTGGAAGATAGTGGTTTTTTATAACTTTTGTAGGGATTCGATGTGCGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATGATTAACTGAAATATTAGAGATGACACATTCTGATTCTGCTAGGTCCCTACTCTCCTTCGACGGCCCAGTGATTAACTAACTACTAACAGCTCTTATTGAATGCACTGATTGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCTCAAAGTATCATCGAGCGCTTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTTAAGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACT ] [-] EMBL CD196138 [ TTNTG AGGGATTTGTTGTGTGACAGTAACCCNATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTA ] [-] EMBL CD191302 [ CCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATGCACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTAAAGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACTGCATCGACTGTGATTAGAAAGTTG ] [+] EMBL CD139305 [ gCGCTGCTGTCGTCCTATCAACTGTTAAAGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACTGCATCGACTGTGATTAGAAAGTTGGCGCCCCCACTAGTAACATTACTTTCTGCGGAACCGGAAATTCAGTATGTCGCTCTGCGCAATATTAACTTAATTGTTCAAAAGCGTAGAGATATTTTAAAGCAGGAGATAAAAGTATTTTTTGTCAAGTATAATGACCCGATCTATGTGAAACTTGAGAAACTAGATATAATGATACGTCTCATTAACCAGTCTAACATTGGTCAGGTGCTTGCTGAACTGAAGGAATACGCAAAAGAAGTTGACGTGGA] consensusID : consensus_10607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [TGTGTGACAGTAACCCTATGGTAGTCGCTATACTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCTTCGACGGCCCGGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTACACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACCGTATCACCGAGTCTAGCCAGTCCCGACGTT] [-] EMBL CD196141 [TGTGTGACAGTAACCCTATGGTAGTCGCTATACTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCTTCGACGGCCCGGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTACACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACCGTATCACCGAGTCTAGCCAGTCCCGACGTT] consensusID : consensus_10607#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence [TAGCAAAGCTGCAAGATATAAATGCCCAGTTAGTGGAAGATAGAGGATTTTTAGAACTTTTGAGGGATTTGTTGAGAGGCAGTAGCCCCATGGTAGACGCTCAAGCTGTCGCATCAATAGCTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGACTTCGACGGATCAGTGATTAACAAACTCCTAACAGCTCT] [-] EMBL CD193742 [TAGCAAAGCTGCAAGATATAAATGCCCAGTTAGTGGAAGATAGAGGATTTTTAGAACTTTTGAGGGATTTGTTGAGAGGCAGTAGCCCCATGGTAGACGCTCAAGCTGTCGCATCAATAGCTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGACTTCGACGGATCAGTGATTAACAAACTCCTAACAGCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10607#0 TAGTTCCGATTGTCCGTAAAGTTCAGACATGCAAGGTGTTGCAGCATCTGTTACTGATAC 60 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 TCTTGGAAATCTCAAACCATGGCTTCAGAAAGTAACAGCTCAATCCAAACCCACTGATGC 120 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 TCGGTACTCCACGACAACGAAAAAAGGTGAAATTTTTGAGCTGAAAGCTGAATTGAATAG 180 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 TGAGCGAAGAGAAAAAAAGAAGGAGGCTGTTAAAAAGGTCATAGCCAGTATGACTGTAGG 240 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 TAAAGACGCTAGTGCTTTGTTTCCAGATGTAATCAACTGTATGCAAACAGACAATTTGGA 300 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 ACTAAAAAAGCTAGTATACCTGTATCTTATGAATTATGCCAAAACACAGCCAGATACTGC 360 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 AATAATGGCTGTGAATACCTTTGTAAAAGATTGCGATGATCCCAATCCACTTATCAGAGC 420 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 GCTTGCTGTGCGAACAATGGGCTGCATACGTGTGGAGAAAATAACCGCCTATCTCTGTGA 480 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 CCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTG 540 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 TGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACT 600 consensus_10607#2 --TAGCAAAGCTGCAAGATATAAATGCCCAGTTAGTGGAAGATAGAGGATTTTTAGAACT 58 consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 TTTGAGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAAT 660 consensus_10607#2 TTTGAGGGATTTGTTGAGAGGCAGTAGCCCCATGGTAGACGCTCAAGCTGTCGCATCAAT 118 consensus_10607#1 --------------TGTGTGACAGTAACCCTATGGTAGTCGCT-ATACTGTCGCATCAAT 45 ** * * ***** *** ******* **** * ************* consensus_10607#0 AACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGG 720 consensus_10607#2 AGCTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGACTTCGACGG 178 consensus_10607#1 AACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCG-CTTCGACGG 104 * ************************************************ ********* consensus_10607#0 CCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTT 780 consensus_10607#2 ATCAGTGATTAACAAACTCCTAACAGCTCT------------------------------ 208 consensus_10607#1 CCCGGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTT 164 * ************************** consensus_10607#0 TATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCAT 840 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 TATACTTGATGCGATTGCAGATTACACACCTGGCGATGATCGTGAGGCACAAAGTATCAT 224 consensus_10607#0 CGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTAA 900 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 CGAACCGTATCACCGAGTCTAGCCAGTCCCGACGTT------------------------ 260 consensus_10607#0 AGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACTGCATCGACTGTGAT 960 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 TAGAAAGTTGGCGCCCCCACTAGTAACATTACTTTCTGCGGAACCGGAAATTCAGTATGT 1020 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 CGCTCTGCGCAATATTAACTTAATTGTTCAAAAGCGTAGAGATATTTTAAAGCAGGAGAT 1080 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 AAAAGTATTTTTTGTCAAGTATAATGACCCGATCTATGTGAAACTTGAGAAACTAGATAT 1140 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 AATGATACGTCTCATTAACCAGTCTAACATTGGTCAGGTGCTTGCTGAACTGAAGGAATA 1200 consensus_10607#2 ------------------------------------------------------------ consensus_10607#1 ------------------------------------------------------------ consensus_10607#0 CGCAAAAGAAGTTGACGTGGA 1221 consensus_10607#2 --------------------- consensus_10607#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||