These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 758 fasta sequence [AAAACTGTTTCGTTATGCGTTACCTAAAGAACTTAGGAGGCGTCGTTAAATGCAGAACCATCCCGTTTTCTTGTGAAAACACTGATCTTTTTAGTGTTGTGCCTAAAAAGAAAGACATCCTCCCGCCAGCACCTGTTGTAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG-AAGGAAAAAATGTTACAGTCAAATGGC-GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTGTTCCAGTAGCACACGCSGGGGATTT-CCCGGA-GTTACTTCTGT-CTTGTAGCGGTA-TCA-TATGATGCTCTGTCTGTAAGGAAGGCCCGCTCTCT] [-] EMBL CD179195 [AAAACTGTTTCGTTATGCGTTACCTAAAGAACTTAGGAGGCGTCGTTAAATGCAGAACCATCCCGTTTTCTTGTGAAAACACTGATCTTTTTAGTGTTGTGCCTAAAAAGAAAGACATCCTCCCGCCAGCACCTGTTGTAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTCATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAA ] [-] EMBL CD134244 [ ACTGTTTCGTTATGCGTTACCTAAAGAACTTAGGAGGCGTCGTTAAATGCAGAACCATCCCGTTTTCTTGTGAAAACACTGATCTTTTTAGTGTTGTGCCTAAAAAGAAAGACATCCTCCCTCCAGCACCTGTTGTAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCTAGTGCA ] [+] EMBL CD118077 [ TTACCTAAAGAACTTAGGAGGCGTCGTTAAATGCACAACCATCCCGTTTTCTTGTGAAAACACTGATCTTTTTACTGTTGTGCCTAAAAAGAAAGACATTCTTCCGCCAGCACCTGTTGTAAAGTCTTCTCATAGTCTACTT ] [-] EMBL CD134543 [ CTTAGGAGGCGTCGTTAAATGCAGAACCATCCCGTTTTCCTGTGAAAACACTGATCTTTTTAGTGTTGTGCCTAAAAAGAAAGACATCCTCCCTCCAGCACCTGTTGTAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAA ] [+] EMBL CD162815 [ TAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTT ] [+] EMBL CD163006 [ TAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTT ] [+] EMBL CD161604 [ TACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGG ] [+] EMBL AI639555 [ ATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTGTAAGAGTCGCACGTTACGGCAAAATGGCGGTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGGAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTGTTCCAGTAGCACACGCSGGGGATTT CCCGGA GTTACTTCTGT CTTGTAGCGGTA TCA TATGATGCTCTGTCTGTAAGGAAGGCCCGCTCTCT] [-] EMBL CD121562 [ ACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTGATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTAAGGCAGAAGCCTCCACCGAAGTCAACTTGGC ] [+] EMBL AW017006 [ TGATTTCACGAAGTACCGACTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACAATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAA ] [-] EMBL CD136837 [ TCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTGTTCCAGTAGCACACGCCGGCGATTTCCCCGGAGGTTACTTCTGTCCTTGTCACGGTAGTCATTATGAaggc ] [+] EMBL CD097227 [ CACCGAAATACAGCGCAAGATATTCTCTTATACGATGAAGTTTGCGACAGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCT ] [+] EMBL CD089311 [ CAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCG ] [-] EMBL CD089304 [ AGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGT ] consensusID : consensus_10609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 488 fasta sequence [GAGATTTTTCATTCGCCATAAATCAGCCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTAGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATTGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTATTCCAGTAGCACACGCCGGCG-ATTTCCCCGGAGGTTACTTCTGTCCTTGTCACGGTAGTCATTATGATGCATCTGGTCGTGTAAGGAAAGGCCCCGCTCCTCTTAACTTGGAAATACCTCAGTACAAGTTTGTGGATGAAAATACCGTCATTGTGGGATAAAACGGT-GATTCAATCTCCTT-GTTCGAAACACTAATTAGCGATACCTCCCTTTTTCATAACAGAGGATGCTTCTGATTTCTATTGGGTATATTTTAAGAAGTACTAACTTATCTTATAGTCTCGCTGTTAGAAGTTACATTTTCAAATATTAATATATCTCCAAAAAAACAAAAA] [-] EMBL AI394846 [GAGATTTTTCATTCGCCATAAATCAGCCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTAGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATTGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTATTCCAGTAGCACACGCCGGAG ATTTCCCCGGAGGTTACTTCTGTCATTGTCACGGTAGTCATTATGATGCATCTGGTCGTGTAAGGAAAGGCCCCGCTCCTCTTAACTTGGAAATACCTCAGTACAAGTTTGTGGATGAAAATACCGTCATTGTGGGATAAAACGGT GATTCAATCTCCTT GTTCGAAACACTAATTAGCGATACCTCCCTTTTTCATAACAGAGGATGCTTCTGATTTCTATTGGGTATATTTTAAGAAGTACTAACTTATCTTATAGTCTCGCTGTTAGAAGTTACATTTTCAAATATTAATATATCTCCAAAAAAACAAAAA] [+] EMBL CD145951 [ CTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTGTTCCAGTAGCACACGCCGGCG ATTTCCCCGGAGGTTACTTCTGTCCTTGTCACGGTAGTCATTATGATGCATCTGGTCGTGTAAGGAAAGGCCCCGCTCCTCTTAACTTGGAAATACCTCAGTACAAGTTTGTGGATGAAAATACCGTCATTGTGGGATAAAACGGT GATTCAATCTCCTT GTTCGAAACACTAATTAGCGATACCTCCCTT ] [+] EMBL SM420 [ CCGGCGNATTTCCCCGGAGGTTACTTCTGTCCTTGTCACGGTAGTCATTATGATGCATCTGGTCGTGTAAGGAAAGGCCCCGCTCCTCTTAACTTGGAAATACCTCAGTACAAGTTTGTGGATGAAAATACCGTCATTGTGGGATAAAACGGTGGATTCAATCTCCTTGGTTCGAAACACTAATTAGCGATACCTCCCTTTTTCATAACAG ] consensusID : consensus_10609#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [TAAAACTGATCGCTAGCATTCCTAAACACTTACGAGGCGGAGGTAAATGCAGAACCATCCCGTTCTCTTGTGAAAACACTGAACATTTTATGCGCGTGCCTAAAAAGAAAGACATCCTCCCGCCAACACCTGTTGGAAAGACTTCTCATAGTCTACTTCGAATCACTTACGAGCTCTCCGTTCACGTTCATGCACTTGCAGATTATCTGCTCCAATGCAGGCCCGATCTGCACACACGGACGTTGCAGATGTTCCTGATTTCACGAAGACCCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCACGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCC] [+] EMBL CD188626 [TAAAACTGATCGCTAGCATTCCTAAACACTTACGAGGCGGAGGTAAATGCAGAACCATCCCGTTCTCTTGTGAAAACACTGAACATTTTATGCGCGTGCCTAAAAAGAAAGACATCCTCCCGCCAACACCTGTTGGAAAGACTTCTCATAGTCTACTTCGAATCACTTACGAGCTCTCCGTTCACGTTCATGCACTTGCAGATTATCTGCTCCAATGCAGGCCCGATCTGCACACACGGACGTTGCAGATGTTCCTGATTTCACGAAGACCCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCACGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10609#0 ------------------------------------------------------------ consensus_10609#2 ------------------------------------------------------------ consensus_10609#1 GAGATTTTTCATTCGCCATAAATCAGCCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTT 60 consensus_10609#0 -------------------------AAAACTGTTTCGTTATGCGTTACCTAAAGAACTTA 35 consensus_10609#2 ------------------------TAAAACTGAT-CGCTA-GCATT-CCTAAACA-CTTA 32 consensus_10609#1 TAGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATTGTGTAAAAGTGGATAAATGGCTGA 120 * * * * * **** ** * consensus_10609#0 GGAGGCGTCG-TTAAATGCAGAACCATCCCGTTTTCTTGTGAAA-ACACTGATCTTTT-- 91 consensus_10609#2 CGAGGCGGAG-GTAAATGCAGAACCATCCCGTTCTCTTGTGAAA-ACACTGAACATTT-- 88 consensus_10609#1 TTTGTCTGGGCGTATGTACACATTTGGGTTGTATTCCAGTAGCACACGCCGGCGATTTCC 180 * * * ** * ** * ** ** ** * ** * * *** consensus_10609#0 --------TAGTGTTGTGCCTAAAAAGAAAGACATCCTCCCGC--CAGCACCTGTTGTAA 141 consensus_10609#2 --------TATGCGCGTGCCTAAAAAGAAAGACATCCTCCCGC--CAACACCTGTTGGAA 138 consensus_10609#1 CCGGAGGTTACTTCTGTCCTTGTCACGGTAGTCATTATGATGCATCTGGTCGTGTAAGGA 240 ** ** * * * * ** *** * ** * * *** * consensus_10609#0 AGTCTTCTCATAGTCT--ACTTCGA-TCACTT----CCGAGCTCTCCGTTCAC-TTCATG 193 consensus_10609#2 AGACTTCTCATAGTCT--ACTTCGAATCACTT----ACGAGCTCTCCGTTCACGTTCATG 192 consensus_10609#1 AAGGCCCCGCTCCTCTTAACTTGGAAATACCTCAGTACAAGTTTGTGGATGAAAATACCG 300 * * * *** **** ** ** * * ** * * * * * * consensus_10609#0 CACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGC-ACACACGGACGTTGCAAATG 252 consensus_10609#2 CACTTGCAGATTATCTGCTCCAATGCAGGCCCGATCTGC-ACACACGGACGTTGCAGATG 251 consensus_10609#1 TCATTGTGGGATAAA-ACGGTGATTCAATCTCCTTGTTCGAAACACTAAT-TAGCGATAC 358 *** * ** * ** ** * * * * * **** * * ** consensus_10609#0 TTCCTGATTTCAC----GAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCT 308 consensus_10609#2 TTCCTGATTTCAC----GAAGACCCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCT 307 consensus_10609#1 CTCCCTTTTTCATAACAGAGGATGCTTCTGATTTCTATTGGGTATATTTTAAGAAGTACT 418 *** ***** ** * * ** **** * * * * * ** consensus_10609#0 G-CTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGAT 367 consensus_10609#2 G-CTGACACCGAAATACAGCGCACGATATTCTCTTATACGATGATGTTTGCGACTGCGAT 366 consensus_10609#1 AACTTATCTTATAGTCTCGCTGTTAGAAGTTACATTTTCAAATATTAATATATCTCCAAA 478 ** * * * ** * * * * * * * ** * ** * * consensus_10609#0 GATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTC 427 consensus_10609#2 GATTGCC----------------------------------------------------- 373 consensus_10609#1 AAAACAAAAA-------------------------------------------------- 488 * consensus_10609#0 CTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTGAAGGAAA 487 consensus_10609#2 ------------------------------------------------------------ consensus_10609#1 ------------------------------------------------------------ consensus_10609#0 AAATGTTACAGTCAAATGGCGTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGA 547 consensus_10609#2 ------------------------------------------------------------ consensus_10609#1 ------------------------------------------------------------ consensus_10609#0 AATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGA 607 consensus_10609#2 ------------------------------------------------------------ consensus_10609#1 ------------------------------------------------------------ consensus_10609#0 TCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTGT 667 consensus_10609#2 ------------------------------------------------------------ consensus_10609#1 ------------------------------------------------------------ consensus_10609#0 TCCAGTAGCACACGCSGGGGATTTCCCGGAGTTACTTCTGTCTTGTAGCGGTATCATATG 727 consensus_10609#2 ------------------------------------------------------------ consensus_10609#1 ------------------------------------------------------------ consensus_10609#0 ATGCTCTGTCTGTAAGGAAGGCCCGCTCTCT 758 consensus_10609#2 ------------------------------- consensus_10609#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||