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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 758 fasta sequence
[AAAACTGTTTCGTTATGCGTTACCTAAAGAACTTAGGAGGCGTCGTTAAATGCAGAACCATCCCGTTTTCTTGTGAAAACACTGATCTTTTTAGTGTTGTGCCTAAAAAGAAAGACATCCTCCCGCCAGCACCTGTTGTAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG-AAGGAAAAAATGTTACAGTCAAATGGC-GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTGTTCCAGTAGCACACGCSGGGGATTT-CCCGGA-GTTACTTCTGT-CTTGTAGCGGTA-TCA-TATGATGCTCTGTCTGTAAGGAAGGCCCGCTCTCT]
[-] EMBL CD179195 [AAAACTGTTTCGTTATGCGTTACCTAAAGAACTTAGGAGGCGTCGTTAAATGCAGAACCATCCCGTTTTCTTGTGAAAACACTGATCTTTTTAGTGTTGTGCCTAAAAAGAAAGACATCCTCCCGCCAGCACCTGTTGTAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTCATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAA ]
[-] EMBL CD134244 [ ACTGTTTCGTTATGCGTTACCTAAAGAACTTAGGAGGCGTCGTTAAATGCAGAACCATCCCGTTTTCTTGTGAAAACACTGATCTTTTTAGTGTTGTGCCTAAAAAGAAAGACATCCTCCCTCCAGCACCTGTTGTAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCTAGTGCA ]
[+] EMBL CD118077 [ TTACCTAAAGAACTTAGGAGGCGTCGTTAAATGCACAACCATCCCGTTTTCTTGTGAAAACACTGATCTTTTTACTGTTGTGCCTAAAAAGAAAGACATTCTTCCGCCAGCACCTGTTGTAAAGTCTTCTCATAGTCTACTT ]
[-] EMBL CD134543 [ CTTAGGAGGCGTCGTTAAATGCAGAACCATCCCGTTTTCCTGTGAAAACACTGATCTTTTTAGTGTTGTGCCTAAAAAGAAAGACATCCTCCCTCCAGCACCTGTTGTAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAA ]
[+] EMBL CD162815 [ TAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTT ]
[+] EMBL CD163006 [ TAAAGTCTTCTCATAGTCTACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTT ]
[+] EMBL CD161604 [ TACTTCGATCACTTCCGAGCTCTCCGTTCACTTCATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGG ]
[+] EMBL AI639555 [ ATGCACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTGTAAGAGTCGCACGTTACGGCAAAATGGCGGTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGGAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTGTTCCAGTAGCACACGCSGGGGATTT CCCGGA GTTACTTCTGT CTTGTAGCGGTA TCA TATGATGCTCTGTCTGTAAGGAAGGCCCGCTCTCT]
[-] EMBL CD121562 [ ACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGCACACACGGACGTTGCAAATGTTCCTGATTTCACGAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTGATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTAAGGCAGAAGCCTCCACCGAAGTCAACTTGGC ]
[+] EMBL AW017006 [ TGATTTCACGAAGTACCGACTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACAATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAA ]
[-] EMBL CD136837 [ TCAATCACGGGCTGCTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTGTTCCAGTAGCACACGCCGGCGATTTCCCCGGAGGTTACTTCTGTCCTTGTCACGGTAGTCATTATGAaggc ]
[+] EMBL CD097227 [ CACCGAAATACAGCGCAAGATATTCTCTTATACGATGAAGTTTGCGACAGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCT ]
[+] EMBL CD089311 [ CAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCG ]
[-] EMBL CD089304 [ AGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTCCTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTG AAGGAAAAAATGTTACAGTCAAATGGC GTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGT ]
consensusID : consensus_10609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 488 fasta sequence
[GAGATTTTTCATTCGCCATAAATCAGCCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTAGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATTGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTATTCCAGTAGCACACGCCGGCG-ATTTCCCCGGAGGTTACTTCTGTCCTTGTCACGGTAGTCATTATGATGCATCTGGTCGTGTAAGGAAAGGCCCCGCTCCTCTTAACTTGGAAATACCTCAGTACAAGTTTGTGGATGAAAATACCGTCATTGTGGGATAAAACGGT-GATTCAATCTCCTT-GTTCGAAACACTAATTAGCGATACCTCCCTTTTTCATAACAGAGGATGCTTCTGATTTCTATTGGGTATATTTTAAGAAGTACTAACTTATCTTATAGTCTCGCTGTTAGAAGTTACATTTTCAAATATTAATATATCTCCAAAAAAACAAAAA]
[-] EMBL AI394846 [GAGATTTTTCATTCGCCATAAATCAGCCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTTTAGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATTGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTATTCCAGTAGCACACGCCGGAG ATTTCCCCGGAGGTTACTTCTGTCATTGTCACGGTAGTCATTATGATGCATCTGGTCGTGTAAGGAAAGGCCCCGCTCCTCTTAACTTGGAAATACCTCAGTACAAGTTTGTGGATGAAAATACCGTCATTGTGGGATAAAACGGT GATTCAATCTCCTT GTTCGAAACACTAATTAGCGATACCTCCCTTTTTCATAACAGAGGATGCTTCTGATTTCTATTGGGTATATTTTAAGAAGTACTAACTTATCTTATAGTCTCGCTGTTAGAAGTTACATTTTCAAATATTAATATATCTCCAAAAAAACAAAAA]
[+] EMBL CD145951 [ CTCAGCTAGATCAAGATCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTGTTCCAGTAGCACACGCCGGCG ATTTCCCCGGAGGTTACTTCTGTCCTTGTCACGGTAGTCATTATGATGCATCTGGTCGTGTAAGGAAAGGCCCCGCTCCTCTTAACTTGGAAATACCTCAGTACAAGTTTGTGGATGAAAATACCGTCATTGTGGGATAAAACGGT GATTCAATCTCCTT GTTCGAAACACTAATTAGCGATACCTCCCTT ]
[+] EMBL SM420 [ CCGGCGNATTTCCCCGGAGGTTACTTCTGTCCTTGTCACGGTAGTCATTATGATGCATCTGGTCGTGTAAGGAAAGGCCCCGCTCCTCTTAACTTGGAAATACCTCAGTACAAGTTTGTGGATGAAAATACCGTCATTGTGGGATAAAACGGTGGATTCAATCTCCTTGGTTCGAAACACTAATTAGCGATACCTCCCTTTTTCATAACAG ]
consensusID : consensus_10609#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence
[TAAAACTGATCGCTAGCATTCCTAAACACTTACGAGGCGGAGGTAAATGCAGAACCATCCCGTTCTCTTGTGAAAACACTGAACATTTTATGCGCGTGCCTAAAAAGAAAGACATCCTCCCGCCAACACCTGTTGGAAAGACTTCTCATAGTCTACTTCGAATCACTTACGAGCTCTCCGTTCACGTTCATGCACTTGCAGATTATCTGCTCCAATGCAGGCCCGATCTGCACACACGGACGTTGCAGATGTTCCTGATTTCACGAAGACCCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCACGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCC]
[+] EMBL CD188626 [TAAAACTGATCGCTAGCATTCCTAAACACTTACGAGGCGGAGGTAAATGCAGAACCATCCCGTTCTCTTGTGAAAACACTGAACATTTTATGCGCGTGCCTAAAAAGAAAGACATCCTCCCGCCAACACCTGTTGGAAAGACTTCTCATAGTCTACTTCGAATCACTTACGAGCTCTCCGTTCACGTTCATGCACTTGCAGATTATCTGCTCCAATGCAGGCCCGATCTGCACACACGGACGTTGCAGATGTTCCTGATTTCACGAAGACCCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCTGCTGACACCGAAATACAGCGCACGATATTCTCTTATACGATGATGTTTGCGACTGCGATGATTGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10609#0 ------------------------------------------------------------
consensus_10609#2 ------------------------------------------------------------
consensus_10609#1 GAGATTTTTCATTCGCCATAAATCAGCCGGAAGAAATCGCTCGTGAACGTGCTGTTCCTT 60
consensus_10609#0 -------------------------AAAACTGTTTCGTTATGCGTTACCTAAAGAACTTA 35
consensus_10609#2 ------------------------TAAAACTGAT-CGCTA-GCATT-CCTAAACA-CTTA 32
consensus_10609#1 TAGAAAGCTTAAGGGATCCTCAGCTAGATCAAGATTGTGTAAAAGTGGATAAATGGCTGA 120
* * * * * **** ** *
consensus_10609#0 GGAGGCGTCG-TTAAATGCAGAACCATCCCGTTTTCTTGTGAAA-ACACTGATCTTTT-- 91
consensus_10609#2 CGAGGCGGAG-GTAAATGCAGAACCATCCCGTTCTCTTGTGAAA-ACACTGAACATTT-- 88
consensus_10609#1 TTTGTCTGGGCGTATGTACACATTTGGGTTGTATTCCAGTAGCACACGCCGGCGATTTCC 180
* * * ** * ** * ** ** ** * ** * * ***
consensus_10609#0 --------TAGTGTTGTGCCTAAAAAGAAAGACATCCTCCCGC--CAGCACCTGTTGTAA 141
consensus_10609#2 --------TATGCGCGTGCCTAAAAAGAAAGACATCCTCCCGC--CAACACCTGTTGGAA 138
consensus_10609#1 CCGGAGGTTACTTCTGTCCTTGTCACGGTAGTCATTATGATGCATCTGGTCGTGTAAGGA 240
** ** * * * * ** *** * ** * * *** *
consensus_10609#0 AGTCTTCTCATAGTCT--ACTTCGA-TCACTT----CCGAGCTCTCCGTTCAC-TTCATG 193
consensus_10609#2 AGACTTCTCATAGTCT--ACTTCGAATCACTT----ACGAGCTCTCCGTTCACGTTCATG 192
consensus_10609#1 AAGGCCCCGCTCCTCTTAACTTGGAAATACCTCAGTACAAGTTTGTGGATGAAAATACCG 300
* * * *** **** ** ** * * ** * * * * * *
consensus_10609#0 CACTTGCAGTTTATCTGCTCCAATGCAGGTCCGATCTGC-ACACACGGACGTTGCAAATG 252
consensus_10609#2 CACTTGCAGATTATCTGCTCCAATGCAGGCCCGATCTGC-ACACACGGACGTTGCAGATG 251
consensus_10609#1 TCATTGTGGGATAAA-ACGGTGATTCAATCTCCTTGTTCGAAACACTAAT-TAGCGATAC 358
*** * ** * ** ** * * * * * **** * * **
consensus_10609#0 TTCCTGATTTCAC----GAAGTACCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCT 308
consensus_10609#2 TTCCTGATTTCAC----GAAGACCCGCCTAGAGTCTACCAAAGACCCTCAATCACGGGCT 307
consensus_10609#1 CTCCCTTTTTCATAACAGAGGATGCTTCTGATTTCTATTGGGTATATTTTAAGAAGTACT 418
*** ***** ** * * ** **** * * * * * **
consensus_10609#0 G-CTGACACCGAAATACAGCGCAAGATATTCTCTTATACGATGATGTTTGCGACTGCGAT 367
consensus_10609#2 G-CTGACACCGAAATACAGCGCACGATATTCTCTTATACGATGATGTTTGCGACTGCGAT 366
consensus_10609#1 AACTTATCTTATAGTCTCGCTGTTAGAAGTTACATTTTCAAATATTAATATATCTCCAAA 478
** * * * ** * * * * * * * ** * ** * *
consensus_10609#0 GATTGCCACTACATCAGCCAAGTACACCGTTAGAATGTTCATTGAACCTCTGGGACCTTC 427
consensus_10609#2 GATTGCC----------------------------------------------------- 373
consensus_10609#1 AAAACAAAAA-------------------------------------------------- 488
*
consensus_10609#0 CTCTAAAACTATGGCAGAAGCCTCCACCGAAGTCAACTTGGCTTCTATCCCTGAAGGAAA 487
consensus_10609#2 ------------------------------------------------------------
consensus_10609#1 ------------------------------------------------------------
consensus_10609#0 AAATGTTACAGTCAAATGGCGTAATAAACCTCTTTTCATTCGCCATAGATCAGCGGAAGA 547
consensus_10609#2 ------------------------------------------------------------
consensus_10609#1 ------------------------------------------------------------
consensus_10609#0 AATCGCTCGTGAACGTGCTGTTCCTTTGGAAAGCTTAAGGGATCCTCAGCTAGATCAAGA 607
consensus_10609#2 ------------------------------------------------------------
consensus_10609#1 ------------------------------------------------------------
consensus_10609#0 TCGTGTAAAAGTGGATAAATGGCTGATTTGTCTGGGCGTATGTACACATTTGGGTTGTGT 667
consensus_10609#2 ------------------------------------------------------------
consensus_10609#1 ------------------------------------------------------------
consensus_10609#0 TCCAGTAGCACACGCSGGGGATTTCCCGGAGTTACTTCTGTCTTGTAGCGGTATCATATG 727
consensus_10609#2 ------------------------------------------------------------
consensus_10609#1 ------------------------------------------------------------
consensus_10609#0 ATGCTCTGTCTGTAAGGAAGGCCCGCTCTCT 758
consensus_10609#2 -------------------------------
consensus_10609#1 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||