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Schistosoma mansoni
cluster # 10610 cluster # 10610       Sequences # 18       consensus # 7


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10610#0 length = 791 sequences # 4  
consensus_10610#1 length = 701 sequences # 2  
consensus_10610#2 length = 619 sequences # 7  
consensus_10610#3 length = 503 sequences # 1  
consensus_10610#4 length = 426 sequences # 1  
consensus_10610#5 length = 207 sequences # 2  
consensus_10610#6 length = 161 sequences # 1  

consensusID : consensus_10610#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 791
fasta sequence
                              [GCTCCGTTCAAATTTTGCCGGCAAAATGAGAGGAAGTGACTGACAATTAAAGTCAGGATGTTTGATATAGATGCCAAACTACTAGAGCAGTTTAGTGCACTTGGTACAACAGACAAGGATGAGTTAATAAATCAACTAAAAGCAGTCGTTGGAAATGATCTATCTGACGAATCATGTCGTTTTTTCTTAGAATTGGCCGACTGGAACCTACAGCGTGCAATCGGTGCGTACTTTGATTTCAGTTTTGAGGGTTCCGCATCAGTTAGTTGTGCATCTAATTACCCACTCACTTCCGTGAGTGTTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGACGTTCCGGAACTTGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCCCTATGGTTTTGGAAGATGTTTAAAGACAATATCTGCGGGATCCAACTGTGATAGTATCTCCGTGTTTAACCTTCAAACTTGTCCATAATACTTATTTTCTTGACTCTAATCTCCAGGTATTCGTGCCAATATTTATTTTCGTTACCAAAATGATTCTCTTTATTCTTCAGACATAGTAAATGTATTTAACTTAGCCCAAGCTAGTCGGTATACATAATAACTAATGTACGAACCTCATAAAAAATTTCAAAAATGATTTATAAAAAAAAAAAAAAAA]

[+] EMBL CD183185             [GCTCCGTTCAAATTTTGCCGGCAAAATGAGAGGAAGTGACTGACAATTAAAGTCAGGATGTTTGATATAGATGCCAAACTACTAGAGCAGTTTAGTGCACTTGGTACAACAGACAAGGATGAGTTAATAAATCAACTAAAAGCAGTCGTTGGAAATGATCTATCTGACGAATCATGTCGTTTTTTCTTAGAATTGGCCGACTGGAACCTACAGCGTGCAATCGGTGCGTACTTTGATTTCAGTTTTGAGGGTTCCGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD078738             [                                   GTGACTGACAATTAAAGTCAGGATGTTTGATATAGATGCCAAACTACTAGAGCAGTTTAGTGCACTTGGTACAACAGACAAGGATGAGTTAATAAATCAACTAAAAGCAGTCGTTGGAAATGATCTATCTGACGAGTCATGTCGTTTTTTCTTAGAATTGGCCGACTGGAACCTACAGCGTGCAATCGGTGCGTACTTTGATTTCAGTTTTGAGGGTTCCGCATCAGTTAGTTGTGCATCTAATTACCCACTCACTTCCGTGAGTGTTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGACGTTCCGGAACTTGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCCCTATGGTTTTGGAAGATGTTTANAGACAATATCTGCGGGATCCAACTGTGATAGTATCTCCGTGTTTAACCTTCAAACTTGTCCATAATACTTATTTTCTTGACTCTAATCTCCAGGTATTCGTGCCAATA                                                                                                                                                  ]
[-] EMBL CD073200             [                                                                                                                                                                                                                      GTGCAATCGGTGCGTACTTT ATTTCAG TTTGAGGGTTCCGCATCAGTTAGTTGTGCATCTAATTACCCACTCACTTCCGTGAGTGTTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGACGTTCCGGAACTTGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCCCTATGGTTTTGGAAGATGTTTAAAGACAATATCTGCGGGATCCAACTGTGATAGTATCTCCGTGTTTAACCTTCAAACTTGTCCATAATACTTATTTTCTTGACTCTAATCTCCAGGTATTCGTGCCAATATTTATTTTCGTTACCAAAATGATTCTCTTTATTCTTCAGACATAGTAAATGTATTTAACTTAGCCCAAGCTAGTCGGTATACATAATAACTAATGTACGAACCTCATAAAAAATTTCAAAAATGATTTAT                ]
[-] EMBL AI395183             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              gaaACACATGACTTAGTGGTACCAAAGAGGCATATTAGCAAGCACCGTGAGCGGTGGACGGAATAGCCCTATGGTTTTGGAAGATGTTTAAAGACAATATCTGCGGAATCCAACTGTGATAGTATCTCCGTGTTTAACCTTCAAACTTGTCCATAATACTTATATTCTTGACTATAATCTCCAGGTATTCGTGCCAATATTTATTTTCGTTACCAAAATGATTCTCTTGATTCTTCAGACATAGTAAATGTATTTAACTTAGCCCAAGCTAGTCGGTATACATAATAAATAATGTACGAACCTCATAAAAAATTTCAAAAATGAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10610#0 GCTCCGTTCAAATTTTGCCGGCAAAATGAGAGGAAGTGACTGACAATTAAAGTCAGGATG TTTGATATAGATGCCAAACTACTAGAGCAGTTTAGTGCACTTGGTACAACAGACAAGGAT GAGTTAATAAATCAACTAAAAGCAGTCGTTGGAAATGATCTATCTGACGAATCATGTCGT TTTTTCTTAGAATTGGCCGACTGGAACCTACAGCGTGCAATCGGTGCGTACTTTGATTTC AGTTTTGAGGGTTCCGCATCAGTTAGTTGTGCATCTAATTACCCACTCACTTCCGTGAGT GTTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAAC CAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGACGTTCCGGAACTTGAAATT CTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTGGAGGTATCAAAGAGGCATA TTAGCAAGCACCGTGAGCGCTGGACGGAATAGCCCTATGGTTTTGGAAGATGTTTAAAGA CAATATCTGCGGGATCCAACTGTGATAGTATCTCCGTGTTTAACCTTCAAACTTGTCCAT AATACTTATTTTCTTGACTCTAATCTCCAGGTATTCGTGCCAATATTTATTTTCGTTACC AAAATGATTCTCTTTATTCTTCAGACATAGTAAATGTATTTAACTTAGCCCAAGCTAGTC GGTATACATAATAACTAATGTACGAACCTCATAAAAAATTTCAAAAATGATTTATAAAAA AAAAAAAAAAA



consensusID : consensus_10610#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 701
fasta sequence
                              [GTTAAACAGCTTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGGCAGAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACATTAAATCTCACTCCTCCAAATCTCCAGCTAAATTACCAATGCCCTGTCGTTGGGGCGTTGTCTTTCTGTCTACCCGACGGCGATAGGTTTGGGGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGCAATCGGTGCGTACTTTGATTTCAGCTTTGAGGGTTCCGCATCAGTTAGTTGTGCATCTAATTACCCACTCACTTCCGTGAGTGTTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGACGTTCCGGAACTTGGTGGGTTTATCAAAGTAACTGTCGAGAACTGTGGTTCTTGTTCTTGGCCTGAAGGAACTTTCCTACGGTCTGAAATAGACCACGCTGTTGCACGGTTAAACAGCTTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGGCAGAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACTTGAAATCTATCTCCTAG]

[-] EMBL CD169279             [GTTAAACAGCTTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGGCAGAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACATTAAATCTCACTCCTCCAAATCTCCAGCTAAATTACCAATGCCCTGTCGTTGGGGCGTTGTCTTTCTGTCTACCCGACGGCGATAGGTTTGGGGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGCAATCGGTGCGTACTTTGATTTCAGCTTTGAGGGTTCCGCATCAGTTAGTTGTGCATCTAATTACCCACTCACTTCCGTGAGTGTTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGACGTTCCGGAACTTGGTGGGTTTATCAAAGTAACTGTCGAGAACTGTGGTTCTTGTTCTTGGCCTGAAGGAACTTTCCTACGGTCTGAAATAGACCACGCTGTTGCACGGTTAAA                                                                                                                        ]
[+] EMBL CD061405             [                                                                                                                                                                                                                                                                                                                                              tagtATTTAATTACCCACTCACTTCCGTGAGTGTTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGACGTTCCGGAACTTGGTGGGTTTATCAAAGTAACTGTCGAGAACTGTGGTTCTTGTTCTTGGCCTGAAGGAACTTTCCTACGGTCTGAAATAGACCACGCTGTTGCACGGTTAAACAGCTTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGGCAGAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACTTGAAATCTATCTCCTAG]


>consensus_10610#1 GTTAAACAGCTTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGG CAGAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACATTAAATCTCAC TCCTCCAAATCTCCAGCTAAATTACCAATGCCCTGTCGTTGGGGCGTTGTCTTTCTGTCT ACCCGACGGCGATAGGTTTGGGGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGGACA CATGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGCAATCGGTGCGTACTTT GATTTCAGCTTTGAGGGTTCCGCATCAGTTAGTTGTGCATCTAATTACCCACTCACTTCC GTGAGTGTTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTA GTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGACGTTCCGGAACTT GGTGGGTTTATCAAAGTAACTGTCGAGAACTGTGGTTCTTGTTCTTGGCCTGAAGGAACT TTCCTACGGTCTGAAATAGACCACGCTGTTGCACGGTTAAACAGCTTATCTGCAGATAAC AGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGGCAGAATTTCTATTCTTCCAATACCT CCGCATCAAATTGTAGACCTAACTTGAAATCTATCTCCTAG



consensusID : consensus_10610#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 619
fasta sequence
                              [TAAACAGCTTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGGCAGAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACATTAAATCTCACTCCTCCAAATCTCCAGCTAAATTACCAATGCCCTGTCGTTGGGGCGTTGTCTTTCTGTCTACCCAACGGCGATAGGTTTGGGGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGAACACATGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCCCTATGGTTTTGGAAGATGTTTAAAGACAATATCTGCGGGATCCAACTGTGATAGTATCTCCGTGTTTAACCTTCAAACTTGTCCATAATACTTATTTTCTTGACTCTAATCTCCAGGTATTCGTGCCAATATTTATTTTCGTTACCAAAATGATTCTCTTTATTCTTCAGACATAGTAAATGTATTTAACTTAGCCCAAGCTAGTCGGTATACATAATAACTAATGTACGAACCTCATAAAAAATTTC-AAAAATGATTTATTGCTTTTATAAAAAAAGTTGTTAATACATTTATTTTTCCAAGAAAAAAAAAAAAAAAA]

[+] EMBL CD189513             [TAAACAGCTTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGGCAGAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACATTAAATCTCACTCCTCCAAATCTCCAGCTAAATTACCAATGCCCTGTCGTTGGGGCGTTGTCTTTCTGTCTACCCAACGGCGATAGGTTTGGGGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCCCTATGGTTTTGGAAGATGTTTAAAGACAATATCTGCGGGATCCAACTGTGATAGTATCTCCGTGTTTAACCTTCAAACTTGTCCATAATACTTATTTTCTTG                                                                                                                                                                                                                          ]
[-] EMBL CD062782             [   ACAGCTTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGGCAGAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACATTAAATCTCACTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD087467             [                                   TGGCTCCCAATCGGTGTAGATGGCAGAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACATTAAATCTCACTCCTCCAAATCTCCAGCTAAATTACCAATGCCCTGTCGTTGGGGCGTTGTCTTTCTGTCTACCCAACGGCGATAGGTTTGGGGAAATTCTTTACTGCACTGCTGTGCCT                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AA559701             [                                                                       CTTCCAATACCTCCGCATCAAATTGTAGACCTAACATTAAATCTCACTCCTCCAAATCTCCAGCTAAATTACCAATGCCCTGTCGTTGGGGCGTTGTCTTTCTGTCTACCCAACGGCGATAGGTTTGGGGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGAACACATGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCCCTATGGTTTTGGAAGATGTTTAAAGACAATATCTGCGGGATCCAACTGTGATAGTATCTCCGTGTTTAACCTTCAAACTTGTCCATA                                                                                                                                                                                                                                         ]
[-] EMBL AI764835             [                                                                                                                                                                 GCGTTTTCTTTCTGTTTTACCAACGGCGATAGGTTTGGGGAAATTCTTTACT TACTGCTGTGCCTGATTTGGAACACATGACTTGGGGGTATCAAAGGGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCCCTATGGTTTTGGAAGATGTTTAAAGACAATATCTGC GGATCCAACTGTGATAGTATCTCCGTGTTTAACCTTCAAACTTGTCCATAATACTTATTTTCTTGACTCTAATCTCCAGGTATTCGTGCCAATATTTATTTTCGTTACCAAAATGATTCTCTTTATTCTTCAGACATAGTAAATGTATTTAACTTAGCCCAAGCTAGTCGGTATACATAATAACTAATGTACGAACCTCATAAAAAATTTCAAAAAATGATTTATT                                                         ]
[-] EMBL AI395360             [                                                                                                                                                                                                                                                   taTGGAGGGAGCATAGAGGCTTATTAGCAACCTCCGTGAGCGTTGGACGGAGTTGCCTTATGGTTTTGGAAGATGTTTAAAGACAATTTCTGCGGGAACCAACTGTGATCGTATCTCCGTGTTTAACCTTCAAACTTGTCCATAATACTTATTTTCTTGACGCTAATCTCCAGGTATTCGTGCCAATATTTATTTTCGTTACCAAAATGATTCTCTTTATTCTTCAGACATAGTAAATGTATTTAACTTAGCCCAAGCTAGTCGGTATACATAATAACTAATGTACGAACCTCATAAAAAATTTC AAAATTGATTTATTGCTTTTATAAAAAA                                           ]
[-] EMBL AI395009             [                                                                                                                                                                                                                                                                                 GCCCTGTGAGCTTTGGACGGAATACCCCTATGGTTTTGGAAGATGTTTAAGGCCAATATCTGCGGAACCCACCTGTGATAGTATCTCCGTGTTTAACCTTCAAACTTGTCCATAATACTTATTTTCTTGACTCTAATCTCCAGGTATTCGTGCCAATATTTATTTTCGTTACCAAAATGATTCTCTTTATTCTTCAGACATAGTAAATGAATTTAACTTAGCCCAAGCTAGTCGGTATACATAATAACTAATGTACGAACCTCATAAAAAATTTC AAAAATGATTTATTGCTTTTATAAAAAAAGTTGTTAATACATTTATTTTTCCAAGAAAAAAAAAAAAAAAA]


>consensus_10610#2 TAAACAGCTTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGGCA GAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACATTAAATCTCACTC CTCCAAATCTCCAGCTAAATTACCAATGCCCTGTCGTTGGGGCGTTGTCTTTCTGTCTAC CCAACGGCGATAGGTTTGGGGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGAACACA TGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCC CTATGGTTTTGGAAGATGTTTAAAGACAATATCTGCGGGATCCAACTGTGATAGTATCTC CGTGTTTAACCTTCAAACTTGTCCATAATACTTATTTTCTTGACTCTAATCTCCAGGTAT TCGTGCCAATATTTATTTTCGTTACCAAAATGATTCTCTTTATTCTTCAGACATAGTAAA TGTATTTAACTTAGCCCAAGCTAGTCGGTATACATAATAACTAATGTACGAACCTCATAA AAAATTTCAAAAATGATTTATTGCTTTTATAAAAAAAGTTGTTAATACATTTATTTTTCC AAGAAAAAAAAAAAAAAAA



consensusID : consensus_10610#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence
                              [CAAAATGAGAGGAAGTGACTGACAATTAAAGTCAGGATGTTTGATATAGATGCCAAACTACTAGAGCAGTTTAGTGCACTTGGTACAACAGACAAGGATGAGTTAATAAATCAACTAAAAGCAGTCGTTGGAAATGATCTATCTGACGAGTCATGTCGTTTTTTCTTAGAATTGGCCGACTGGAACCTACAGCGTGCAATCGGTGCGTACTTTGATTTCAGTTTTGAGGGTTCCGCATCAGTTAGTTGTGCATCTAATTACCCACTCACTTCCGTGAGTGTTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGACGTTCCGGAACTTGGTGGGTTTATCAAAGTAACTGTCGAGAACTGTGGTTCTTGTTCTTGGCCTGAAGGAACGTTCCTACGGTCTGAAGTTAGTGCTCGATCATAACTATTTTAACCACATTT]

[+] EMBL AI977375             [CAAAATGAGAGGAAGTGACTGACAATTAAAGTCAGGATGTTTGATATAGATGCCAAACTACTAGAGCAGTTTAGTGCACTTGGTACAACAGACAAGGATGAGTTAATAAATCAACTAAAAGCAGTCGTTGGAAATGATCTATCTGACGAGTCATGTCGTTTTTTCTTAGAATTGGCCGACTGGAACCTACAGCGTGCAATCGGTGCGTACTTTGATTTCAGTTTTGAGGGTTCCGCATCAGTTAGTTGTGCATCTAATTACCCACTCACTTCCGTGAGTGTTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGACGTTCCGGAACTTGGTGGGTTTATCAAAGTAACTGTCGAGAACTGTGGTTCTTGTTCTTGGCCTGAAGGAACGTTCCTACGGTCTGAAGTTAGTGCTCGATCATAACTATTTTAACCACATTT]


>consensus_10610#3 CAAAATGAGAGGAAGTGACTGACAATTAAAGTCAGGATGTTTGATATAGATGCCAAACTA CTAGAGCAGTTTAGTGCACTTGGTACAACAGACAAGGATGAGTTAATAAATCAACTAAAA GCAGTCGTTGGAAATGATCTATCTGACGAGTCATGTCGTTTTTTCTTAGAATTGGCCGAC TGGAACCTACAGCGTGCAATCGGTGCGTACTTTGATTTCAGTTTTGAGGGTTCCGCATCA GTTAGTTGTGCATCTAATTACCCACTCACTTCCGTGAGTGTTTGCGAATCATCTGCGAAT GTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGG ATATGGCCATCACCTTACGACGTTCCGGAACTTGGTGGGTTTATCAAAGTAACTGTCGAG AACTGTGGTTCTTGTTCTTGGCCTGAAGGAACGTTCCTACGGTCTGAAGTTAGTGCTCGA TCATAACTATTTTAACCACATTT



consensusID : consensus_10610#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence
                              [TTGATCCTATATTGTAATTATCTACTCATTATCTTCCACATATATTAAAACTTGTTTTAATCGTCTCACCCCTGTTGATTTTTTTTGACTATTTACTTTCTTGAAACATCAATTTAAATGGACGTTTTCCAAGAGGTCTTGTCTTAGTTCTCCTTATATTATGTATGTGCCTGATTTACAGTCATGATCAAAACCACAGTTAAGTAATCTCGATTCGTCTAACATACTCCACACAACCTCTTTTAAATGATACCATATAAGAAGTTCGCTCTTAAACGTTTAACATGTCTATTCATACTTTGGAAAATGTTCCGAACTATTTAATTACGCGGTAACTAAGTTGCTCATATTCTCAATTTTCTTGTAGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTGGAGGTATCAAAGA]

[+] EMBL CD083982             [TTGATCCTATATTGTAATTATCTACTCATTATCTTCCACATATATTAAAACTTGTTTTAATCGTCTCACCCCTGTTGATTTTTTTTGACTATTTACTTTCTTGAAACATCAATTTAAATGGACGTTTTCCAAGAGGTCTTGTCTTAGTTCTCCTTATATTATGTATGTGCCTGATTTACAGTCATGATCAAAACCACAGTTAAGTAATCTCGATTCGTCTAACATACTCCACACAACCTCTTTTAAATGATACCATATAAGAAGTTCGCTCTTAAACGTTTAACATGTCTATTCATACTTTGGAAAATGTTCCGAACTATTTAATTACGCGGTAACTAAGTTGCTCATATTCTCAATTTTCTTGTAGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTGGAGGTATCAAAGA]


>consensus_10610#4 TTGATCCTATATTGTAATTATCTACTCATTATCTTCCACATATATTAAAACTTGTTTTAA TCGTCTCACCCCTGTTGATTTTTTTTGACTATTTACTTTCTTGAAACATCAATTTAAATG GACGTTTTCCAAGAGGTCTTGTCTTAGTTCTCCTTATATTATGTATGTGCCTGATTTACA GTCATGATCAAAACCACAGTTAAGTAATCTCGATTCGTCTAACATACTCCACACAACCTC TTTTAAATGATACCATATAAGAAGTTCGCTCTTAAACGTTTAACATGTCTATTCATACTT TGGAAAATGTTCCGAACTATTTAATTACGCGGTAACTAAGTTGCTCATATTCTCAATTTT CTTGTAGAAATTCTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTGGAGGTAT CAAAGA



consensusID : consensus_10610#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 207
fasta sequence
                              [AGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCGTAAGTATAATGGTGTTTTACAAACAATGATTGATCAGCGTTAGCTGATAACCAGATAAACCATTTGATTTTTAACTACCAATGGCTTTATATTTATAGTCGTATATTTTACTTTCCAGCCTATGGTTTTGGAAGATGTTTAAAGACAATATCTGCGGGATCCAACT]

[+] EMBL CD113147             [AGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCGTAAGTATAATGGTGTTTTACAAACAATGATTGATCAGCGTTAGCTGATAACCAGATAAACCATTTGATTTTTAACTACCAATGGCTTTATATTTATAGTCGTATATTTTACTTTCCAGCCTATGGTTTTGGAAGATGTTTAAAGACAATATCTGCGGGATCCAACT]
[+] EMBL CD113197             [AGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCGTAAGTATAATGGTGTTTTACAAACAATGATTGATCAGCGTTAGCTGATAACCAGATAAACCATTTGATTTTTAACTACCAATGGCTTTATATTTATAGTCGCATATTTTACTTTCCAGCCTATGGTTTTGGAAGATGTTTAAAGACAATATCTGCGGGATCCAACT]


>consensus_10610#5 AGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCGTAAGTATAATGGTGTTTTA CAAACAATGATTGATCAGCGTTAGCTGATAACCAGATAAACCATTTGATTTTTAACTACC AATGGCTTTATATTTATAGTCGTATATTTTACTTTCCAGCCTATGGTTTTGGAAGATGTT TAAAGACAATATCTGCGGGATCCAACT



consensusID : consensus_10610#6
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 161
fasta sequence
                              [ACTTCCGTGAGTGTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAACCAAAGGCAATNTGATGCACGGATATGGGCCACACCCTCTGACCGATTGCGAGGCTTGAAATTCTTTACTGCACTGCTGTGCCTGATTTGG]

[-] EMBL CD155054             [ACTTCCGTGAGTGTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAGTTCTAGTAAACCAAAGGCAATNTGATGCACGGATATGGGCCACACCCTCTGACCGATTGCGAGGCTTGAAATTCTTTACTGCACTGCTGTGCCTGATTTGG]


>consensus_10610#6 ACTTCCGTGAGTGTTGCGAATCATCTGCGAATGTGGACTGCATGCGTATAGATTCCGAAG TTCTAGTAAACCAAAGGCAATNTGATGCACGGATATGGGCCACACCCTCTGACCGATTGC GAGGCTTGAAATTCTTTACTGCACTGCTGTGCCTGATTTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10610#0      ------------------------------------------------------------
consensus_10610#6      ------------------------------------------------------------
consensus_10610#3      ------------------------------------------------------------
consensus_10610#1      GTTAAACAGCTTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGG 60
consensus_10610#2      --TAAACAGCTTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGG 58
consensus_10610#5      ------------------------------------------------------------
consensus_10610#4      ------------------------------------------------------------
                                                                                   

consensus_10610#0      ----GCTCCGTTCAAATTTTGCCGGCAAAATGAGAGGAAGTGACTGACAATTAAAGTCAG 56
consensus_10610#6      ------------------------------------------------------------
consensus_10610#3      -------------------------CAAAATGAGAGGAAGTGACTGACAATTAAAGTCAG 35
consensus_10610#1      CAGAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACATTAAATCTCAC 120
consensus_10610#2      CAGAATTTCTATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACATTAAATCTCAC 118
consensus_10610#5      ------------------------------------------------------------
consensus_10610#4      --------------------------------------------------TTGATCCTA- 9
                                                                                   

consensus_10610#0      GATGTTTGATATAGATGCCAAACTACTAGAGCAGTTTAGT--GCACTTGGTACAACAGAC 114
consensus_10610#6      ------------------------------------------------------------
consensus_10610#3      GATGTTTGATATAGATGCCAAACTACTAGAGCAGTTTAGT--GCACTTGGTACAACAGAC 93
consensus_10610#1      TCCTCCAAATCTCCA-GCTAAATTACCAATGCCCTGTCGTTGGGGCGTTGTCTTTCTGTC 179
consensus_10610#2      TCCTCCAAATCTCCA-GCTAAATTACCAATGCCCTGTCGTTGGGGCGTTGTCTTTCTGTC 177
consensus_10610#5      ------------------------------------------------------------
consensus_10610#4      TATTGTAATTATCTA---CTCATTATCTTCCACATAT-ATTAAAACTTGTTTTAATCGTC 65
                                                                                   

consensus_10610#0      AAGGATGAGTTAATAAATCAACTAAAAGCAGTCGTTGGAAATGATCTATCTGAC--GAAT 172
consensus_10610#6      ------------------------------------------------------------
consensus_10610#3      AAGGATGAGTTAATAAATCAACTAAAAGCAGTCGTTGGAAATGATCTATCTGAC--GAGT 151
consensus_10610#1      TACCCGACGGCGATAGGTTTGGGGAAATTCTTTACTGCAC-TGCTGTGCCTGATTTGGGA 238
consensus_10610#2      TACCCAACGGCGATAGGTTTGGGGAAATTCTTTACTGCAC-TGCTGTGCCTGATTTGGAA 236
consensus_10610#5      ------------------------------------------------------------
consensus_10610#4      TCACCCCTGTTGATTTTTTTTGACTATTTACTTTCTTGAAACATCAATTTAAAT---GGA 122
                                                                                   

consensus_10610#0      CATGTCGTTTTTTCTTAGAATTGGCCGACTGGAACCTACAGCGTGCAATCGGTGCGTACT 232
consensus_10610#6      ------------------------------------------------------------
consensus_10610#3      CATGTCGTTTTTTCTTAGAATTGGCCGACTGGAACCTACAGCGTGCAATCGGTGCGTACT 211
consensus_10610#1      CACATGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGCAATCGGTGCGTACT 298
consensus_10610#2      CACATGACTTGGAGGTATCAAAGAGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAAT 296
consensus_10610#5      -----------------------AGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAAT 37
consensus_10610#4      CGTTTTCCAAGAGGTCTTGTCTTAGTTCTCCT--TATATTATGTATGTGCCTGATTTACA 180
                                                                                   

consensus_10610#0      TTGATTTCAGTTTTGAGGGTTCCGCATCAGTTAGT--TGTGC---ATCTAATTACCCACT 287
consensus_10610#6      ------------------------------------------------------------
consensus_10610#3      TTGATTTCAGTTTTGAGGGTTCCGCATCAGTTAGT--TGTGC---ATCTAATTACCCACT 266
consensus_10610#1      TTGATTTCAGCTTTGAGGGTTCCGCATCAGTTAGT--TGTGC---ATCTAATTACCCACT 353
consensus_10610#2      AGCCCTATGGTTTTGGAAGATGTTTAAAGACAATA--TCTGCGGGATCCAACTGTGATAG 354
consensus_10610#5      AGCGTAAGTATAATGGTGTTTTACAAACAATGATTGATCAGCGTTAGCTGATAACCAGAT 97
consensus_10610#4      GTCATGATCAAAACCACAGTTAAGTAATCTCGATTCGTCTAACATACTCCAC-ACAACCT 239
                                                                                   

consensus_10610#0      CACTTCCGTGAGTGTTTGCGAATCATCTGCG-AATGTGGACTG-CATGCGTATAGATTCC 345
consensus_10610#6      -ACTTCCGTGAGTGTT-GCGAATCATCTGCG-AATGTGGACTG-CATGCGTATAGATTCC 56
consensus_10610#3      CACTTCCGTGAGTGTTTGCGAATCATCTGCG-AATGTGGACTG-CATGCGTATAGATTCC 324
consensus_10610#1      CACTTCCGTGAGTGTTTGCGAATCATCTGCG-AATGTGGACTG-CATGCGTATAGATTCC 411
consensus_10610#2      TATCTCCGTGTTTAACCTTCAAACTTGTCCATAATACTTATTT-TCTTGACTCTAATCTC 413
consensus_10610#5      AAACCATTTGATTTTTAACTACCAATGGCTT-TATATTTATAGTCGTATATTTTACTTTC 156
consensus_10610#4      CTTTTAAATGATACCATATAAGAAGTTCGCTCTTAAACGTTTAACATGTCTATTCATACT 299
                               **          *    *                    *         *   

consensus_10610#0      GAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGAC--G 403
consensus_10610#6      GAAGTTCTAGTAAACCAAAGGCAATNTGATGCACGGATATGGGCCACACCCTCTGACCGA 116
consensus_10610#3      GAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGAC--G 382
consensus_10610#1      GAAGTTCTAGTAAACCAAAGGCAATTTGATGCACGGATATGGCCATCACCTTACGAC--G 469
consensus_10610#2      CAGGTATTCGT--GCCAATATTTATTTTCGTTACCAAAATGATTCTCTTTATTCTTCAGA 471
consensus_10610#5      CAGCCTATGGT--TTTGGAAGATGTTTAAAG-AC-AATATCTGCGGGATCCAACT----- 207
consensus_10610#4      TTGGAAAATGT---TCCGAACTATTTAATTACGCGGTAACTAAGTTGCTCATATTCTCAA 356
                                **             *        *    *                     

consensus_10610#0      TTCCGGAACTTGAA--ATTCTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTG 461
consensus_10610#6      TTGCGAGGCTTGAA--ATTCTTTACTGCACTGCTGTGCCTGATTTGG------------- 161
consensus_10610#3      TTCCGGAACTTGGT--GGGTTTATCAAAGTAACTGT-CGAGAACTGTGGTTCTTGTTCTT 439
consensus_10610#1      TTCCGGAACTTGGT--GGGTTTATCAAAGTAACTGT-CGAGAACTGTGGTTCTTGTTCTT 526
consensus_10610#2      CATAGTAAATGTATTTAACTTAGCCCAAGCTAGTCGGTATACATAATAACTAATGTACGA 531
consensus_10610#5      ------------------------------------------------------------
consensus_10610#4      TTTTCTTGTAGAAA---TTCTTTACTGCACTGCTGTGCCTGATTTGGGACACATGACTTG 413
                                                                                   

consensus_10610#0      GAGGTATCAAAGAGGCATATTAGCAAGCACCGTGAGCGCTGGACGGAATAGCCCTATGGT 521
consensus_10610#6      ------------------------------------------------------------
consensus_10610#3      GGCCTGAAGGAACGTTCCTACGGTCTGAAGTTAGTGCTCGATCATAACTATTTTAACCAC 499
consensus_10610#1      GGCCTGAAGGAACTTTCCTACGGTCTGAAAT-AGACCACGCTGTTGCACGGTTAAACAGC 585
consensus_10610#2      ACCTCATAAAAAATTTCAAAAATGATTTATTGCTTTTATAAAAAAAGTTGTTAATACATT 591
consensus_10610#5      ------------------------------------------------------------
consensus_10610#4      GAGGTATCAAAGA----------------------------------------------- 426
                                                                                   

consensus_10610#0      TTTGGAAGATGTTTAAAGACAATATCTGCGGGATCCAACTGTGATAGTATCTCCGTGTTT 581
consensus_10610#6      ------------------------------------------------------------
consensus_10610#3      ATTT-------------------------------------------------------- 503
consensus_10610#1      TTATCTGCAGATAACAGTGAAGTTCTATGGCTCCCAATCGGTGTAGATGGCAGAATTTCT 645
consensus_10610#2      TATTTTTCCAAGAAAAAAAAAAAAAAAA-------------------------------- 619
consensus_10610#5      ------------------------------------------------------------
consensus_10610#4      ------------------------------------------------------------
                                                                                   

consensus_10610#0      AACCTTCAAACTTGTCCATAATACTTATTTTCTTGACTCTAATCTCCAGGTATTCGTGCC 641
consensus_10610#6      ------------------------------------------------------------
consensus_10610#3      ------------------------------------------------------------
consensus_10610#1      ATTCTTCCAATACCTCCGCATCAAATTGTAGACCTAACTTGAAATCTATCTCCTAG---- 701
consensus_10610#2      ------------------------------------------------------------
consensus_10610#5      ------------------------------------------------------------
consensus_10610#4      ------------------------------------------------------------
                                                                                   

consensus_10610#0      AATATTTATTTTCGTTACCAAAATGATTCTCTTTATTCTTCAGACATAGTAAATGTATTT 701
consensus_10610#6      ------------------------------------------------------------
consensus_10610#3      ------------------------------------------------------------
consensus_10610#1      ------------------------------------------------------------
consensus_10610#2      ------------------------------------------------------------
consensus_10610#5      ------------------------------------------------------------
consensus_10610#4      ------------------------------------------------------------
                                                                                   

consensus_10610#0      AACTTAGCCCAAGCTAGTCGGTATACATAATAACTAATGTACGAACCTCATAAAAAATTT 761
consensus_10610#6      ------------------------------------------------------------
consensus_10610#3      ------------------------------------------------------------
consensus_10610#1      ------------------------------------------------------------
consensus_10610#2      ------------------------------------------------------------
consensus_10610#5      ------------------------------------------------------------
consensus_10610#4      ------------------------------------------------------------
                                                                                   

consensus_10610#0      CAAAAATGATTTATAAAAAAAAAAAAAAAA 791
consensus_10610#6      ------------------------------
consensus_10610#3      ------------------------------
consensus_10610#1      ------------------------------
consensus_10610#2      ------------------------------
consensus_10610#5      ------------------------------
consensus_10610#4      ------------------------------
                                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)