These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 992 fasta sequence [TGAAGAGAATCGATTGGAGGAAGAGGATATTGATACGAGTGTGCCTAACTTTGAGCTGGATGTAGAAAATCAATTCGATAAAAATGAGGAAACCACTGACAATAAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATT-GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT-ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGA-CTTCGTCATAAAACTGTATCGGAACTAATTCATTTTTATTACCTTTGGAAGAAGACAGCACGTCATGATGAGTTTGCGCGAATATATCGTAGAGATAAAAAGAAATCTTCACATCCTAACATTGCGGATTTTATGGATTGTTTGGCTATGGAACAAGAAATTCTGGCGGAATCCTATATGCAAAGTGCCACTGATGTAGTTTTGTCAACTGCAGCATCGAATCCAGATCCTCATAAGTACATTCAGCTTACTTCAATCAGTAATATCGGTTCCATGAAAGCTGGTAGTTGTCAGATGGACTCATCTATTAGTAGTAACA] [-] EMBL CD111162 [TGAAGAGAATCGATTGGAGGAAGAGGATATTGATACGAGTGTGCCTAACTTTGAGCTGGATGTAGAAAATCAATTCGATAAAAATGAGGAAACCACTGACAATAAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATTNGGTGAAGATTATCAG ] [-] EMBL CD154840 [ AAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCATACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGAT ] [-] EMBL CD154808 [ AAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAGGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGAT ] [+] EMBL CD084606 [ TGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCAGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGA CTTCGTCATAAAACTGTATCGGAACTAATTCATTTTTATTACCTTTGGAAGAAGACAGCACGTCATGATGAGTTTGCGCGAATATATCGTAGAGATAAAAAGAAAT ] [+] EMBL CD084618 [ TGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAAGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATCTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTACTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCA ] [+] EMBL CD195976 [ taAAGATAGTGCTCGCGATTGATAATCTGAGACAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTTATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGCTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGCAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGC ] [+] EMBL CD195943 [ GTGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACTTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGNATGAAGCGCTGCNACGATTACNATTT AAGCAGTATCACC ] [+] EMBL CD183364 [ TGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAAT ] [+] EMBL CD190788 [ GAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATGTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAGAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGA CTTCGTCATAAAACTGTATCGGAACTAATTCATTTTTATTACCTTTGGAAG AGACAGCACGTCATG ] [+] EMBL CD089228 [ TGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGTATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGGGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGA CTTCGTCATAAAACTGTATCGGAACTAATTCATTTTTATTACCTTTG ] [+] EMBL CD130581 [ CTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCTNACCCTGCCTATTGA ] [+] EMBL CD129171 [ tcggTACCCTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCCTGTTAATGCGTTGTGATTACG ] [+] EMBL CD129185 [ cggTACCCTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCCTGTTAATGCGTTGTGATTACG ] [-] EMBL CD147231 [ CGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGA CTTCGTCATAAAACTGTATCGGAACTAATTCATTTTTATTACCTTTGGAAGAAGACAGCACGTCATGATGAGTTTGCGCGAATATATCGTAGAGATAAAAAGAAATCTTCACATCCTAACATTGCGGATTTTATGGATTGTTTGGCTATGGAACAAGAAATTCTGGCGGAATCCTATATGCAAAGTGCCACTGATGTAGTTTTGTCAACTGCAGCATCGAATCCAGATCCTCATAAGTACATTCAGCTTACTTCAATCAGTAATATCGGTTCCATGAAAGCTGGTAGTTGTCAGATGGACTCATCTATTAGTAGTAACA] [-] EMBL CD195874 [ ATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGC CTTCGTCAT ] [-] EMBL CD196022 [ TTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATATGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACGCGAGCTTGGTCAT ] consensusID : consensus_10614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [ATTATAAAATTTACGTACAATACTTCCTCGTTTTCATCGGTTCTCTAACAATGGCAAATCCATTATGTAAACTGAATGCTCAGCATTCTCCATAATCCCCTCATGCTAATATTTATAATTCATTGACCAACAATACGAACTTCATATCACGTACTTAAATTACTTATTCTCTGAAGCTCTCCTTCCTACATTTTATTTCCTTAATCTCTTTTCTCTCTATATTTCCAACATGCTATATAGGAGATAAAAATTGGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGA] [-] EMBL CD186206 [ATTATAAAATTTACGTACAATACTTCCTCGTTTTCATCGGTTCTCTAACAATGGCAAATCCATTATGTAAACTGAATGCTCAGCATTCTCCATAATCCCCTCATGCTAATATTTATAATTCATTGACCAACAATACGAACTTCATATCACGTACTTAAATTACTTATTCTCTGAAGCTCTCCTTCCTACATTTTATTTCCTTAATCTCTTTTCTCTCTATATTTCCAACATGCTATATAGGAGATAAAAATTGGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGA] consensusID : consensus_10614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 403 fasta sequence [ATATTGATACGAGTGTGCCTAACTTTGAGCTGGATGTAGAAAATCAATTCGATAAAAATGAGGAAACCACTGACAATAAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTTACTTTTGTTATCGTTAATACCCAGCAACTCAATGGGAGATTTAATGAGGAAGTCTCTTGACGTATTACGTGTCGGTTACCATCAATAATTGTTGAATAACAATCAGTGTAATAAAATTAACAACAGCAGACAAGTCTTAACACGTGCAGATAAAATTTGTGCCAATCAATAACAAAGCAGTTAAACA] [-] EMBL CD190157 [ATATTGATACGAGTGTGCCTAACTTTGAGCTGGATGTAGAAAATCAATTCGATAAAAATGAGGAAACCACTGACAATAAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTTACTTTTGTTATCGTTAATACCCAGCAACTCAATGGGAGATTTAATGAGGAAGTCTCTTGACGTATTACGTGTCGGTTACCATCAATAATTGTTGAATAACAATCAGTGTAATAAAAT ] [+] EMBL CD195666 [ GTGGTCGCGATTGGAAAGGTTACTTTTGTTATCGTTAATACCCAGCAACTCAATGGGAGATTTAATGAGGAAGTCTCTTGACGTATTACGTGTCGGTTACCATCAATAATTGTTGAATAACAATCAGTGTAATAAAATTAACAACAGCAGACAAGTCTTAACACGTGCAGATAAAATTTGTGCCAATCAATAACAAAGCAGTTAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10614#0 TGAAGAGAATCGATTGGAGGAAGAGGATATTGATACGAGTGTGCCTAACTTTGAGC---- 56 consensus_10614#2 --------------------------ATATTGATACGAGTGTGCCTAACTTTGAGC---- 30 consensus_10614#1 ------------------ATTATAAAATTTACGTACAATACTTCCTCGTTTTCATCGGTT 42 ** * *** * * *** *** * * consensus_10614#0 ---TGGATGTAGAAAATCAATTCGATAAAAATGAGGAA-ACCACTGACAATAAATT--TG 110 consensus_10614#2 ---TGGATGTAGAAAATCAATTCGATAAAAATGAGGAA-ACCACTGACAATAAATT--TG 84 consensus_10614#1 CTCTAACAATGGCAAATCCATTATGTAAACTGAATGCTCAGCATTCTCCATAATCCCCTC 102 * * * ***** *** **** * * * ** * * **** * consensus_10614#0 AAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTA 170 consensus_10614#2 AAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTA 144 consensus_10614#1 ATGCTAATATTTATAATTCATTGACCAACAATACGAACTTCATATCACGTACTTAAATTA 162 * ** ** ** **** * * ** ** * ** *** ** consensus_10614#0 CACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCG 230 consensus_10614#2 CACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCG 204 consensus_10614#1 CTTATTC-TCTGAAGCTCTCCTTCCTACATTTTATTTCCTTAATCTCTTTTCTCTCTATA 221 * *** * * * * * ** * * * * * * consensus_10614#0 ATTGGAA-AGGTGAGAT------AAAA-ATTGGTGAAGATTATCAGGCAAATATCCCTAT 282 consensus_10614#2 ATTGGAA-AGGTTACTT------TTGTTATCGTTAATACCCAGCAACTCAATGGGAGATT 257 consensus_10614#1 TTTCCAACATGCTATATAGGAGATAAAAATTGGTGAAGATTATCAGGCAAATATCCCTAT 281 ** ** * * * * ** * * * * ** *** * consensus_10614#0 GCTTGTGCTAGCATCA-AATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATG 341 consensus_10614#2 TAATGAGGAAGTCTCTTGACGTATTACGTGTCGGTTACCATCAATAATTGTTGAATAACA 317 consensus_10614#1 GCTTGTGCTAGCATCA-AATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATG 340 ** * ** ** * *** * * * ** ** * * * ** * consensus_10614#0 GTT--CTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTG 399 consensus_10614#2 ATCAGTGTAATAAAATTAACAACAG--CAGACAAGTCTTAACACGTGCAGATAAAATTTG 375 consensus_10614#1 GTT--CTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTG 398 * ** * ** *** * ** * * * * ** * * ** ** * ** consensus_10614#0 TGA-AACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCTACACTGC 458 consensus_10614#2 TGCCAATCAATAACAAAGCAGTTAAACA-------------------------------- 403 consensus_10614#1 TGA-AACTGATGTCACACGCTTTGAGA--------------------------------- 424 ** ** ** ** * ** * consensus_10614#0 CTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACG 518 consensus_10614#2 ------------------------------------------------------------ consensus_10614#1 ------------------------------------------------------------ consensus_10614#0 ATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCG 578 consensus_10614#2 ------------------------------------------------------------ consensus_10614#1 ------------------------------------------------------------ consensus_10614#0 GCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTAT 638 consensus_10614#2 ------------------------------------------------------------ consensus_10614#1 ------------------------------------------------------------ consensus_10614#0 GTGGAAAAGATTTTCGGCAGATCCGAGAGACACGACTTCGTCATAAAACTGTATCGGAAC 698 consensus_10614#2 ------------------------------------------------------------ consensus_10614#1 ------------------------------------------------------------ consensus_10614#0 TAATTCATTTTTATTACCTTTGGAAGAAGACAGCACGTCATGATGAGTTTGCGCGAATAT 758 consensus_10614#2 ------------------------------------------------------------ consensus_10614#1 ------------------------------------------------------------ consensus_10614#0 ATCGTAGAGATAAAAAGAAATCTTCACATCCTAACATTGCGGATTTTATGGATTGTTTGG 818 consensus_10614#2 ------------------------------------------------------------ consensus_10614#1 ------------------------------------------------------------ consensus_10614#0 CTATGGAACAAGAAATTCTGGCGGAATCCTATATGCAAAGTGCCACTGATGTAGTTTTGT 878 consensus_10614#2 ------------------------------------------------------------ consensus_10614#1 ------------------------------------------------------------ consensus_10614#0 CAACTGCAGCATCGAATCCAGATCCTCATAAGTACATTCAGCTTACTTCAATCAGTAATA 938 consensus_10614#2 ------------------------------------------------------------ consensus_10614#1 ------------------------------------------------------------ consensus_10614#0 TCGGTTCCATGAAAGCTGGTAGTTGTCAGATGGACTCATCTATTAGTAGTAACA 992 consensus_10614#2 ------------------------------------------------------ consensus_10614#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||