|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10632#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 937 fasta sequence
[GATCATTATCGGACGAAGAACAAAGGACTGAAACGGCTCGTTTTATTACCCGCACGCTGACGGAGGCTCTGCTGGCTGTTACGACCGAACTTATTGACGGCATAGTAGAAGAAGTAATGACAGAAGCGGTTTCAGGGAAATCACATGTTCTACCATCAGAAGACTCTCCATCTGTCGAGATAAAATCCCCAATTCTAGGTTTGGTCTCTTATAATAGTGAAAGTGAGTCAGAATCTGAGCAAAACGTGTTGGAAAGTAAACTACCCACAAATAAGTTATCAGGTATACTACCAGGTGATGTTCCTGATGATGTAAAACATGACTATACATCACAGAATAGTCCTAGTAATGAAAATAATAAAATTGTCACTGGAAATGGGAAATTTCAAACTGCACAAGAAAAGAATCATGAAAAGCATTCTTATTCCTCCAGCATTCATCAGAAATCTAAGCGCTATAAAAATGAAAAAGAAACGGATATGGCGGTCACAATTTCTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACAAATTCACGGCATTCGCATCGCAGTCGTAAAAGAGATTTTCGTGGTTCGTCAACAGCTTCTTCAGAATCTTCAAGTTCTAATCATGGGAACCAAAAAGTAGGATTCTCTCGATTCAGTCGATCCTCAGCAGACCACATTAAAAATGTTCGGTCACCAAAACATTATTNTGCGAAGTCCAGTCATTCGAAACATTCTCATCATANAAGTCACCATTNAGATTGTACACTTTCCTGTATTTAAGTGTAACCCCTGTCTCGTTNGCACTTNATATCCTTAGTCACAGTGAGAATTCAGACAGGGTATTTATCATTTGGTATGAAATATTCGTTNCCCCACACACACTGCTCATAGAACTAANTNCTTTNATTAAATAGGGTACAGTACCATCATTGTCTACTAAATAT]
[+] EMBL CD081279 [GATCATTATCGGACGAAGAACAAAGGACTGAAACGGCTCGTTTTATTACCCGCACGCTGACGGAGGCTCTGCTGGCTGTTACGACCGAACTTATTGACGGCATAGTAGAAGAAGTAATGACAGAAGCGGTTTCAGGGAAATCACATGTTCTACCATCAGAAGACTCTCCATCTGTCGAGATAAAATCCCCAATTCTAGGTTTGGTCTCTTATAATAGTGAAAGTGAGTCAGAATCTGAGCAAAACGTGTTGGAAAGTAAACTACCCACAAATAAGTTATCAGGTATACTACCAGGTGATGTTCCTGATGATGTAAAACATGACTATACATCACAGAATAGTCCTAGTAATGAAAATAATAAAATTGTCACTGGAAATGGGAAATTTCAAACTGCACAAGAAAAGAATCATGAAAAGCATTCTTATTCCTCCAGCATTCATCAGAAATCTAAGCGCTATAAAAATGAAAAAGAAACGGATATGGCGGTCACAATTTCTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACAAATTCACGGCATTCGCATCGCAGTCGTAAAAGAGATTTTCGTGGTTCGTCAACAGCTTCTTCAGAATCTTCAAGTTCTAATCATGGGAACCAAAAAGTAGGATTCTCTCGATTCAGTCGATCCTCAGCAGACCACATTAAAAATGTTCGGTCACCAAAACATTATTNTGCGAAGTCCAGTCATTCGAAACATTCTCATCATANAAGTCACCATTNAGATTGTACACTTTCCTGTATTTAAGTGTAACCCCTGTCTCGTTNGCACTTNATATCCTTAGTCACAGTGAGAATTCAGACAGGGTATTTATCATTTGGTATGAAATATTCGTTNCCCCACACACACTGCTCATAGAACTAANTNCTTTNATTAAATAGGGTACAGTACCATCATTGTCTACTAAATAT]
consensusID : consensus_10632#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 867 fasta sequence
[CCCTGCTCGAGGGATTTGTACACTTTCCTGTATTAAGTGTTAACCTGTCTTCGGTTTGCACTTATAATCCTTAGTTCACAAGTGAGATTTCAGACAGGTAATTTTATCATTTGGTAAGTGAATTTAATGACTTTCAAATCAAATCTATTTTCTGATGATTGACTTAACAATAGTAACATGTTATTTTATTCATCTTGTTTCGGCAGTACAAAGTTACTGCATTCACTGTAAAATACAGTGAATCTGAATTTAATATATCAGCCCACAGTACGCACTTTTGGAAAGCAAGTTTATACTCTTCATTTTGGGTCGGCATACAATAATTATTCATATTTATGGTGTTTGTTATTTGGTACAGAAGAAATGTTTAAGTCCTAGATACATCTATTTTTTTGTTACAGATTTTACACTCGTTATTGTCCTATTCATTTTCATCTTTTCAACTGTCTCCTTGACAATTTTGTTTCCAATACTTTCTTGCAAATGTTCTCACTAACAGCAAACGAACTGATGATCTCCTACGGGACTTCGTGTTCCGGTATTGAATAATATTACTGCTATAATTAGGCAGAGTACTGTACACAGAAGCCAGTTTACTAATCAAATCTTTCTCATACAGTTACTCTCAAGTTTATCTGTCTATTTTTCCTATCATTATTCTGTTCAACTTACTGANCATATTTCAAGTAAATCTTAAATAGAGTATCTATTTTTTGAAAATTATTAAATTCACCTTCTTCAGTCAGTATTTGCGTCCCTATTATCGNNCATTGTCTTACTTTTAGTATGAANTATTCGTTNCCACACACACTGCTCAATGAACTAATTCTTTTATAAAAATGNGACAAGACCATCATTGCTACTTAA]
[+] EMBL CD082158 [CCCTGCTCGAGGGATTTGTACACTTTCCTGTATTAAGTGTTAACCTGTCTTCGGTTTGCACTTATAATCCTTAGTTCACAAGTGAGATTTCAGACAGGTAATTTTATCATTTGGTAAGTGAATTTAATGACTTTCAAATCAAATCTATTTTCTGATGATTGACTTAACAATAGTAACATGTTATTTTATTCATCTTGTTTCGGCAGTACAAAGTTACTGCATTCACTGTAAAATACAGTGAATCTGAATTTAATATATCAGCCCACAGTACGCACTTTTGGAAAGCAAGTTTATACTCTTCATTTTGGGTCGGCATACAATAATTATTCATATTTATGGTGTTTGTTATTTGGTACAGAAGAAATGTTTAAGTCCTAGATACATCTATTTTTTTGTTACAGATTTTACACTCGTTATTGTCCTATTCATTTTCATCTTTTCAACTGTCTCCTTGACAATTTTGTTTCCAATACTTTCTTGCAAATGTTCTCACTAACAGCAAACGAACTGATGATCTCCTACGGGACTTCGTGTTCCGGTATTGAATAATATTACTGCTATAATTAGGCAGAGTACTGTACACAGAAGCCAGTTTACTAATCAAATCTTTCTCATACAGTTACTCTCAAGTTTATCTGTCTATTTTTCCTATCATTATTCTGTTCAACTTACTGANCATATTTCAAGTAAATCTTAAATAGAGTATCTATTTTTTGAAAATTATTAAATTCACCTTCTTCAGTCAGTATTTGCGTCCCTATTATCGNNCATTGTCTTACTTTTAGTATGAANTATTCGTTNCCACACACACTGCTCAATGAACTAATTCTTTTATAAAAATGNGACAAGACCATCATTGCTACTTAA]
consensusID : consensus_10632#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 851 fasta sequence
[TGTTCTACCATCAGAAGACTCTCCATCTGTCGAGATAAATCCCCAATTCTAGGTTTGGTCTCTTATAATAGTGAAAGTGAGTCAGAATCTGAGCAAAACGTGTTGGAAAGTAAACTACCCACAAATAAGTTATCAGGTATACTACCAGGTGATGTTCCTGATGATGTAAAACATGACTATACATCACAGAATAGTCCTAGTAATGAAAGTAAGTTTATTTAATTAATGAGGTAACTTTTTATACTCGTCTGCGAATC-TTAGAAACCGTTGATGAAAATCGTTGGACCATGGATGTTCATGTAAATCTCATACAATTGATCATCTCTCCTATAACTCCAACACTTAGCTGATGGTGATATCCTTGTCTGTCGAACCTTAATTCATGATGTCGTTACATAACATGTTCGATTGTTTATATATATCGCACTACTGTCTCCCTTCATTTTGGTAATGAGTGAAATCTTTGAAAAACATTGTCTCAGTCAGTTTTATTTATAATTATACATCTGTGATTTTTATTATCTGGGAAATCATGCCTCTCATTCCTATGCTTCAAATTCAAGTGTTAATCAGCTATCGTGGGTCGTGGGTGCGATAAAAATGATTTCAAGTGGGCCTTTTTTTTCTTCCTAGGATTGTTTTGCGTAGTTTAACATTCTGTCCAATAAAAATCTAATAACTTGATGTAGTGATCAACTAAGTCAATCACTATGATCGTTGAGTATAGGTTTTTCTGGCCTTTTAATGTTCAATGAATTCTGGGAGCATTTAGAGTACTCTGCATATTTTTAGACAGCTTTTCTAATAATTTCATCGACATTTCATTCTACAGCTTAACAAATGCTTTAGNC]
[+] EMBL CD061062 [TGTTCTACCATCAGAAGACTCTCCATCTGTCGAGATAAATCCCCAATTCTAGGTTTGGTCTCTTATAATAGTGAAAGTGAGTCAGAATCTGAGCAAAACGTGTTGGAAAGTAAACTACCCACAAATAAGTTATCAGGTATACTACCAGGTGATGTTCCTGATGATGTAAAACATGACTATACATCACAGAATAGTCCTAGTAATGAAAGTAAGTTTATTTAATTAATGAGGTAACTT ]
[+] EMBL CD181752 [ GTTGGAAAGTAAACTACCCACAAATAAGTTATCAGGTATACTACCAGGTGATGTTCCTGATGATGTAAAACATGACTATACATCACAGAATAGTCCTAGTAATGAAAGTAAGTTTATTTAATTAATGAGGTAACTTTTTATACTCGTCTGCGAATC TTAGAAACCGTTGATGAAAATCGTTGGACCATGGATGTTCATGTAAATCTCATACAATTGATCATCTCTCCTATAACTCCAACACTTAGCTGATGGTGATATCCTTGTCTGTCGAACCTTAATTCATGATGTCGTTACATAACATGTTCGATTGTTTATATATATCGCACTACTGTCTCCCTTCATTTTGGTAATGAGTGAAATCTTTGNAAAACATTG ]
[-] EMBL CD181292 [ gnnAAAGTAAACTANCCACNAATTAGTATTCAGGTATACTACCAGGTGATGTTCCTGATGATGTAAAACATGACTATACATCACAGNATAGTCNTAGTAATG AAGT AGTTTATTTTATTAATGAGGTACTTTTTTATACTCGTCTGCG ATCTTTAGAAACCGTTGATGAAAATCGTTGGACCATGGATGTTCATGTAAATCTCATACAATTGATCATCTCTCCTATAACTCCAACACTTAGCTGATGGTGATATCCTTGTCTGTCGAACCTTAATTCATGATGCCGTTACATAACATGTTCGATTGTTTATATATCTCGCACTACTGTCTCCCTTCATTTTGGTAATGAGTGAAATCTTTGAAAAACATTGTCTCAGTCAGTTTTATTTATAATTATACATCTGTGATTTTTATTATCTGGGAAATCATGCCTCTCATTCCTATGCTTCAAATTC ]
[-] EMBL CD181740 [ TCCTGATGATGTAAAACATGACTATACATCACAGAATAGTCCTAGTAATGAAAGTAAGTTTA TTAATTAATGAGGTAACTTTTTATACTCGTCTGCGAATC TTAGAAACCGTTGATGAAAATCGTTGGACCATGGATGTTCATGTAAATCTCATACAATTGATCATCTCTCCTATAACTCCAACACTTAGCTGATGGTGATATCCTTGTCTGTCGAACCTTAATTCATGATGTCGTTACATAACATGTTCGATTGTTTATATATATCGCACTACTGTCTCCCTTCATTTTGGTAATGAGTGAAATCTTTGAAAAACATTGTCTCAGTCAGTTTTATTTATAATTATACATCTGTGATTTTTATTATCTGGGAAATCATGCCTCTCATTCCTATGCTTCAAATTC ]
[-] EMBL CD181390 [ tannGTAATGAAAGTAAG TTATTTAATTAATGAGGTAAC TTTTATACTCGTCTGCGAATC TTAGAAACCGTTGATGAAAATCGTTGGACCATGGATGTTCATGTAAATCTCATACAATTGATCATCTCTCCTATAACTCCAACACTTAGCTGATGGTGATATCCTTGTCTGTCGAACCTTAATTCATGATGTCGTTACATAACATGTTCGATTGTTTATATATATCGCACTACTGTCTCCCTTCATTTTGGTAATGAGTGAAATCTTCGAAAAACATTGTCTCAGTCAGTTTTATTTATAATTATACATCTGTGATTTTTATTATCTGGGAAATCATGCCTCTCATTCCTATGCTTCAAATTC ]
[-] EMBL CD194720 [ TCTCAGTCAGTTTTATTTATAATTATACATCTGTGATTTTTATTATCTGGGAAATCATGCCTCTCATTCCTATGCTTCAAATTCAAGTGTTAATCAGCTATCGTGGGTCGTGGGTGCGATAAAAATGATTTCAAGTGGGCCTTTTTTTTCTTCCTAGGATTGTTTTGCGTAGTTTAACATTCTGTCCAATAAAAATCTAATAACTTGATGTAGTGATCAACTAAGTCAATCACTATGATCGTTGAGTATAGGTTTTTCTGGCCTTTTAATGTTCAATGAATTCTGGGAGCATTTAGAGTACTCTGCATATTTTTAGACAGCTTTTCTAATAATTTCATCGACAT ]
[+] EMBL CD166167 [ AAAATGATTTCAAGTGTTTTTCTTTTTTCTTCCTAGGATTGTTTTGCGTAGTTTAACATTCTGTCCAATAAAAATCTAATAACTTGATGTAGTGATCAACTAAGTCAATCACTATGATCGTTGAGTATAGGTTTTTCTGGCCTTTTAATGTTCAATGAATTCTGGGAGCATTTAGAGTACTCTGCATATTTTTAGACAGCTTTTCTAATAATTTCATCGACATTTCATTCTACAGCTTAACAAATGCTTTAGNC]
consensusID : consensus_10632#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 777 fasta sequence
[GGCCCTCGAGGCAGATTCGGCACGAGGCTGATGATTGACTTAACAATAGTACATGTTATTTTATTCATCTTGTTTCGGCAGTACAAAGTTACTGCATTCACTGTAAAATACAGTGAATCTGAATTTAATATATCAGCCCACAGTACGCACTTTTGGAAAGCAAGTTTATACTCTTCATTTTGGGTCGGCATACAATAATTATTCATATTTATGGTGTTTGTTATTTGGTACAGAAGAAATGTTTAAGTCCTAGATACATCTATTTTTTTGTTACAGATTTTACACTCGTTATTGTCCTATTCATTTTCATCTTTTCAACTGTCTCCTTGACAATTTTGTTTCCAATACTTTCTTGCAAATGTTCTCACTAACAGCAAACGAACTGATGATCTCCTACGGGACTTCGTGTTCCGGTATTGAATAATATTACTGCTATAATTAGGCAGAGTACTGTACACAGAAGCCAGTTTACTAATCAAATCTTTCTCATACAGTTACTCTCAAGTTTATCTGTCTATTTTTCCTATCATTATTCTGTTCAACTTACTGACAATATTTCAAGTAAATCTTAAAATAGAGTATCTATTTTTTGAAATTTATTAATTTCAACCTTCTTTCAGTCAGTAATTTGCGTTCCCTATTTATCGTCAATTTGTCTTTACTTTTCAGGTATGGAAATATTCGGTTTCCCAACAACACAACTGCTCATATGATCTTAATTTCTTTTTCATATAAATATGTGTACAAAGTACCAATCATTTGTCTACTTAAAAATAA]
[+] EMBL CD084010 [GGCCCTCGAGGCAGATTCGGCACGAGGCTGATGATTGACTTAACAATAGTACATGTTATTTTATTCATCTTGTTTCGGCAGTACAAAGTTACTGCATTCACTGTAAAATACAGTGAATCTGAATTTAATATATCAGCCCACAGTACGCACTTTTGGAAAGCAAGTTTATACTCTTCATTTTGGGTCGGCATACAATAATTATTCATATTTATGGTGTTTGTTATTTGGTACAGAAGAAATGTTTAAGTCCTAGATACATCTATTTTTTTGTTACAGATTTTACACTCGTTATTGTCCTATTCATTTTCATCTTTTCAACTGTCTCCTTGACAATTTTGTTTCCAATACTTTCTTGCAAATGTTCTCACTAACAGCAAACGAACTGATGATCTCCTACGGGACTTCGTGTTCCGGTATTGAATAATATTAC ]
[-] EMBL CD075774 [ ATACAATAATTATTCATATTTATGGTGTTTGTTATTTGGTACAGAAGAAATGTTTAAGTCCTAGATACATCTATTTTTTTGTTACAGATTTTACACTCGTTATTGTCCTATTCATTTTCATCTTTTCAACTGTCTCCTTGACAATTTTGTTTCCAATACTTTCTTGCAAATGTTCTCACTAACAGCAAACGAACTGATGATCTCCTACGGGACTTCGTGTTCCGGTATTGAATAATATTACTGCTATAATTAGGCAGAGTACTGTACACAGAAGCCAGTTTACTAATCAAATCTTTCTCATACAGTTACTCTCAAGTTTATCTGTCTATTTTTCCTATCATTATTCTGTTCAACTTACTGACAATATTTCAAGTAAATCTTAAAATAGAGTATCTATTTTTTGAAATTTATTAATTTCAACCTTCTTTCAGTCAGTAATTTGCGTTCCCTATTTATCGTCAATTTGTCTTTACTTTTCAGGTATGGAAATATTCGGTTTCCCAACAACACAACTGCTCATATGATCTTAATTTCTTTTTCATATAAATATGTGTACAAAGTACCAATCATTTGTCTACTTAAAAATAA]
consensusID : consensus_10632#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 668 fasta sequence
[GAGGGAATAGTCCTAGTAATGAAAATAATAAAATTGTCACTGGAAATGGGAAATTTCAAACTGCACAAGAAAAGAATCATGAAAAGCATTCTTATTCCTCCAGCATTCATCAGAAATCTAAGCGCTATAAAAATGAAAAAGAAACGGATATGGCGGTCACAATTTCTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACAAATTCACGGCATTCGCATCGCAGTCGTAAAAGAGATTTTCGTGGTTCGTCAACAGCTTCTTCAGAATCTTCAAGTTCTAATCATGGGAACCAAAAAGTAGGATTCTCTCGATTCAGTCGATCCTCAGCAGACCACATTAAAAATGTTCGGTCACCAAAACATTATTTTGCGAAGTCCAGTCATTCGAAACATTCTCATCATAAAAGTCACCATTAGATTTGTACACTTTCCTGTATTAAGTGTTAACCTGTCTTCGGTTTGCACTTATAATCCTTAGTTCACAAGTGAGATTTCAGACAGGTAATTTTATCATTTGGTAAGTGAATTTAATGACTTTCAAATCAAATCTATTTTCTGATGATTGACTTAACAATAGTAACATGTTATTNTATTCATCTTGTTTCGGCAGTACAAAGTTACTGCATTCACTGTAAAATACAGTGAATCTGAATTTAATATATCAGC]
[+] EMBL CD083014 [GAGGGAATAGTCCTAGTAATGAAAATAATAAAATTGTCACTGGAAATGGGAAATTTCAAACTGCACAAGAAAAGAATCATGAAAAGCATTCTTATTCCTCCAGCATTCATCAGAAATCTAAGCGCTATAAAAATGAAAAAGAAACGGATATGGCGGTCACAATTTCTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACAAATTCACGGCATTCGCATCGCAGTCGTAAAAGAGATTTTCGTGGTTCGTCAACAGCTTCTTCAGAATCTTCAAGTTCTAATCATGGGAACCAAAAAGTAGGATTCTCTCGATTCAGTCGATCCTCAGCAGACCACATTAAAAATGTTCGGTCACCAAAACATTATTTTGCGAAGTCCAGTCATTCGAAACATTCTCATCATAAAAGTCACCATTAGATTTGTACACTTTCCTGTATTAAGTGTTAACCTGTCTTCGGTTTGCACTTATAATCCTTAGTTCACAAGTGAGATTTCAGACAGGTAATTTTATCATTTGGTAAGTGAATTTAATGACTTTCAAATCAAATCTATTTTCTGATGATTGACTTAACAATAGTAACATGTTATTNTATTCATCTTG ]
[+] EMBL CD140754 [ TCTTATTCCTCCAGCATTCATCAGAAATCTAAACGCTAT AAAATGAAAAAGAAACGGATATGGCCGTCACAATTTCTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACAAATTCACGGCATTCGCATCGCAGTCGTAAAAGAGATTTTCGTGGTTCGTCAACAGCTTCTTCAGAATCTTCAAGTTCTAATCATGGGAACCAAAAAGTAGGATTCTCTCGATTCAGTCGATCCTCAGCAGACCACATTAAAAATGTTCGGTCACCAAAACATTATTTTGCGAAGTCCAGTCATTCGAAACATTCTCATCATAAAAGTCACCATTAGATTTGTACACTTTCCTGTATTAAGTGTTAACCTGTCTTCGGTTTGCACTTATAATCCTTAGTTCACAAGTGAGATTTCAGACAGGTAATTTTATCATTTGGTAAGTGAATTTAATGACTTTCAAATCAA ]
[+] EMBL CD141958 [ CGTAAAAAAGATTTTCGTGGTTCGGCAACAGCTACTTCATAATCTTCAAGTTCTAATCATGGGAACCAAAAAGTTAGATTCTCTCGATTCAGTCGATCCTCAGCAGACCACATTAAAAATGTTCGGTCACCAAAACATTATTTTGCGAAGTCCAGTCATTCAAAACATTCTCATCATAAAAGTCACCATTAGATTTGTACACTTTCCTGTATTAAGTGTTAACCTGTCTTCGGTTTGCACTAATAATCCTTAGTTCACAAGTGAGATTTCACACAGGTAATTTTATCATTTGGTAAGTGAATTTAATGACTTTCAAATCAAATCTATTTTCTGATGATTGACTTAACAATAGTAACATGTTATTTTATTCATCTTGTTTCGGCAGTACAAAGTTACTGCATTCACTGTAAAATACAGTGAATCTGAATTTAATATATCAGC]
consensusID : consensus_10632#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 578 fasta sequence
[TTTCAAACTGCACAAGAAAAGAATCATGAAAAGCATTCTTATTCCTCCAGCATTCATCAGAAATCTAAGCGCTATAAAAATGAAAAAGAAACGGATATGGCCGTCACAATTTCTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACAAATTCACGGCATTCGCATCGCAGTCGTAAAAGAGATTTTCGTGGTTCGTCAACAGCTTCTTCAGAATCTTCAAGTTCTAATCATGGGAACCAAAAAGTAGGATTCTCTCGATTCAGTCGATCCTCAGCAGACCACATTAAAAATGTTCGGTCACCAAAACATTATTTTGCGAAGTCCAGTCATTCGAAACATTCTCATCATAAAAGTCACCATTAGATTTGTACACTTTCCTGTATTAAGTGTTAACCTGTCTTCGGTTTGCACTTATAATCCTTAGTTCACAAGTGAGATTTCAGACAGGTAATTTTATCATTTGGTATGGAAATATTCGGTTTCCCAACAACACAACTGCTCATATGATCTTAATTTCTTTTTCATATAAATATGTGTACAAAGTACCAATCATTTGTCTACTTAAAAATAATCTA]
[-] EMBL CD075108 [TTTCAAACTGCACAAGAAAAGAATCATGAAAAGCATTCTTATTCCTCCAGCATTCATCAGAAATCTAAGCGCTATAAAAATGAAAAAGAAACGGATATGGCGGTCACAATTTCTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACAAATTCACGGCATTCGCATCGCAGTCGTAAAAGAGATTTTCGTGGTTCGTCAACAGCTTCTTCAGAATCTTCAAGTTCTAATCATGGGAACCAAAAAGTAGGATTCTCTCGATTCAGTCGATCCTCAGCAGACCACATTAAAAATGTTCGGTCACCAAAACATTATTTTGCGAAGTCCAGTCATTCGAAACATTCTCATCATAAAAGTCACCATTAGATTTGTACACTTTCCTGTATTAAGTGTTAACCTGTCTTCGGTTTGCACTTATAATCCTTAGTTCACAAGTGAGATTTCAGACAGGTAATTTTATCATTTGGTATGGAAATATTCGGTTTCCCAACAACACAACTGCTCATATGATCTTAATTTCTTTTTCATATAAATATGTGTACAAAGTACCAATCATTTGTCTACTTAAAAATAATCTA]
[+] EMBL AI067957 [ GGATATGGCCGTCACAATTTCTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACAAATTCACGGCATTCGCATCGCAGTCGTAAAAGAGATTTTCGTGGTTCGTCAACAGCTTCTTCAGAATCTTCAAGTTCTAATCATGGGAACCAAAAAGTAGGATTCTCTCGATTCAGTCGATCCTCAGCAGACCACATTAAAAATGTTCGGTCACCAAAACATTATTTTGCGAAGTCCAGTCATTCGAAACATTCTCATCATAAAAGTCACCATTAGATTTGTACACTTTCCTGTATTAAGTGTTAACCTGTCTTCGGTTTGCACTTATAATCCTTAGTTCACAAGTGAGATTTCAGACAGGT ]
[+] EMBL AI068332 [ GATATGGCCGTCACAATTTCTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACAAATTCACGGCATTCGCATCGCAGTCGTAAAAGAGATTTTCGTGGTTCGTCAACAGCTTCTTCAGAATCTTCAAGTTCTAATCATGGGAACCAAAAAGTAGGATTCTCTCGATTCAGTCGATCCTCAGCAGACCACATTAAAAATGTTCGGTCACCAAAACATTATTTTGCGAAGTCCAGTCATTCGAAACATTCTCATCATAAAAGTCACCATTAGATTTGTACACTTTCCTGTATTAAGTGTTAACCTGTCTTCGGTTTGCACTTATAATCCTTAGTTCACAAGTGAGATTTCAGACAGGTAATTTTATCATTTGGTATGGAAATATTCGGTTTCCCAACAACACAACTGCTCATATGATCTTAATTTCTTTTTCATATAAATATGTGTACAAA ]
[+] EMBL AI067747 [ TTCGCATCGCAGTCGTAAAAGAGATTTTCGTGGTTCGTCAACAGCTTCTTCAGAATCTTCAAGTTCTAATCATGGGAACCAAAAAGTAGGATTCTCTCGATTCAGTCGATCCTCAGCAGACCACATTAAAAATGTTCGGTCACCAAAACATTATTTTGCGAAGTCCAGTCATTCGAAACATTCTCATCATAAAAGTCACCATTAGATTTGTACACTTTCCTGTATTAAGTGTTAACCTGTCTTCGGTTTGCACTTATAATCCTTAGTTCACAAGTGAGATTTCAGACAGGTAATTTTATCATTTGGAATGGAAATATTCGGTTTCTCAACAACACAACTGCTCATATGATCATAATTTCTTTTTCACATAAATA ]
consensusID : consensus_10632#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence
[ACTGGCGGTAAATTTTTTTTAAGTAAACAAAGGATGGGTCCTTTGTCCCCATTTTTATTTGAAAAAAAAATTAATCATTTGACCAGTTGGGTTGTTGGGAAACCGAATTTTTCCTTACCTGAAAAGTAAAGACAAATTGGCGATAAATAGGGAACCCAAATTACTGGCTGAAAAAAGGGTGAAATTAATAAATTTCAAAAAATAAATCCTTTTTTTTAAAATTTACTTGAAATATTGGCAGTAAGTTGAACAAAATATTGATGGGAAAAATAGACAGATAACCTTGAAAGTAACTGTATGAAAAAA]
[+] EMBL CD076599 [ACTGGCGGTAAATTTTTTTTAAGTAAACAAAGGATGGGTCCTTTGTCCCCATTTTTATTTGAAAAAAAAATTAATCATTTGACCAGTTGGGTTGTTGGGAAACCGAATTTTTCCTTACCTGAAAAGTAAAGACAAATTGGCGATAAATAGGGAACCCAAATTACTGGCTGAAAAAAGGGTGAAATTAATAAATTTCAAAAAATAAATCCTTTTTTTTAAAATTTACTTGAAATATTGGCAGTAAGTTGAACAAAATATTGATGGGAAAAATAGACAGATAACCTTGAAAGTAACTGTATGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10632#0 GATCATTATCGGACGAAGAACAAAGGACTGAAACGGCTCGTTTTATTACCCGCACGCTGA 60
consensus_10632#5 ------------------------------------------------------------
consensus_10632#4 ------------------------------------------------------------
consensus_10632#1 ------------------------------------------------------------
consensus_10632#3 ------------------------------------------------------------
consensus_10632#6 ------------------------------------------------------------
consensus_10632#2 ------------------------------------------------------------
consensus_10632#0 CGGAGGCTCTGCTGGCTGTTACGACCGAACTTATTGACGGCATAGTAGAAGAAGTAATGA 120
consensus_10632#5 ------------------------------------------------------------
consensus_10632#4 ------------------------------------------------------------
consensus_10632#1 -----------------------------CCCTGCTCGAGGGATTTGTACACTTTCCTGT 31
consensus_10632#3 ------------------------------------------------------------
consensus_10632#6 ------------------------------------------------------------
consensus_10632#2 ------------------------------------------------------------
consensus_10632#0 CAGAAGCGGTTTCAGGGAAATCACATGTTCTACCATCAGAAGACTCTCCATCTGTCGAGA 180
consensus_10632#5 ------------------------------------------------------------
consensus_10632#4 ------------------------------------------------------------
consensus_10632#1 ATTAAGTGTTAACCTGTCTTCGGTTTGCACTTATAATCCTTAGTTCACAAGTGAGATTTC 91
consensus_10632#3 ------------------------------------------------------------
consensus_10632#6 ------------------------------------------------------------
consensus_10632#2 -------------------------TGTTCTACCATCAGAAGACTCTCCATCTGTCGAGA 35
consensus_10632#0 TAAAATCCCCAATTCTAGGTTTGGTCTCTTATAATAGTGAAAGTGAGTCAGAATCTGAGC 240
consensus_10632#5 ------------------------------------------------------------
consensus_10632#4 ------------------------------------------------------------
consensus_10632#1 AGACAGGTAATTTTATCATTTGGTAAGTGAATTTAATGACTTTCAAATCAAATCTATTTT 151
consensus_10632#3 -------------------------------------GGCCCTCGAGGCAGATTCGGCAC 23
consensus_10632#6 ------------------------------------------------------------
consensus_10632#2 TAA-ATCCCCAATTCTAGGTTTGGTCTCTTATAATAGTGAAAGTGAGTCAGAATCTGAGC 94
consensus_10632#0 AAAACGTGTTGGAAAGTAAACTACCCACAAATAAGTTATCAGGTATACTACCAGGTGATG 300
consensus_10632#5 ------------------------------------------------------------
consensus_10632#4 ------------------------------------------------------------
consensus_10632#1 ----CTGATGATTGACTTAACAATAGTAACATGTTATTTTATTCATCTTGTTTCGGCAGT 207
consensus_10632#3 GAGGCTGATGATTGACTTAACAATAGTA-CATGTTATTTTATTCATCTTGTTTCGGCAGT 82
consensus_10632#6 ------------------------------------------------------------
consensus_10632#2 AAAACGTGTTGGAAAGTAAACTACCCACAAATAAGTTATCAGGTATACTACCAGGTGATG 154
consensus_10632#0 TTCCTGATGATGTAAAACATGACTATACATCACAGAATAGTCCTAGTAATGAAAATAATA 360
consensus_10632#5 ------------------------------------------------------------
consensus_10632#4 ------------------------------GAGGGAATAGTCCTAGTAATGAAAATAATA 30
consensus_10632#1 ACAAAGTTACTGCATTCACTGTAAAATACAGTGAATCTGAATTTAATATATCAGCCCACA 267
consensus_10632#3 ACAAAGTTACTGCATTCACTGTAAAATACAGTGAATCTGAATTTAATATATCAGCCCACA 142
consensus_10632#6 ------------------------------------------------------------
consensus_10632#2 TTCCTGATGATGTAAAACATGACTATACATCACAGAATAGTCCTAGTAATGAAAGTAAGT 214
consensus_10632#0 AAATTGTCACTGGAAATGGGAAATTTCAAACTGCACAA-GAAAAGAATCATGAAAAGCAT 419
consensus_10632#5 -----------------------TTTCAAACTGCACAA-GAAAAGAATCATGAAAAGCAT 36
consensus_10632#4 AAATTGTCACTGGAAATGGGAAATTTCAAACTGCACAA-GAAAAGAATCATGAAAAGCAT 89
consensus_10632#1 GTACGCACTTTTGGAAAGCAAGTTTATACTCTTCATTTTGGGTCGGCATACAATAATTAT 327
consensus_10632#3 GTACGCACTTTTGGAAAGCAAGTTTATACTCTTCATTTTGGGTCGGCATACAATAATTAT 202
consensus_10632#6 ------------------------------------------------------------
consensus_10632#2 TTATTTA-ATTAATGAGGTAACTTTTTATACTCGTCTG-----CGAATCTTAGAAACCGT 268
consensus_10632#0 TCTTATTCCTCCAGCAT-TCATCAGAAATCTAAGCGCTATAAAAATGAAAAAGAAACGGA 478
consensus_10632#5 TCTTATTCCTCCAGCAT-TCATCAGAAATCTAAGCGCTATAAAAATGAAAAAGAAACGGA 95
consensus_10632#4 TCTTATTCCTCCAGCAT-TCATCAGAAATCTAAGCGCTATAAAAATGAAAAAGAAACGGA 148
consensus_10632#1 TCATATTTATGGTGTTTGTTATTTGGTACAGAAGAAATGTTTAAGTCCTAGATACATCTA 387
consensus_10632#3 TCATATTTATGGTGTTTGTTATTTGGTACAGAAGAAATGTTTAAGTCCTAGATACATCTA 262
consensus_10632#6 ------------------------------------------------------------
consensus_10632#2 TGAT---------GAAAATCGTTGGACCATGGATGTTCATGTAAATCTCATACAATTGAT 319
consensus_10632#0 TATGGCGGTCACAATTT-----CTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACA 533
consensus_10632#5 TATGGCCGTCACAATTT-----CTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACA 150
consensus_10632#4 TATGGCGGTCACAATTT-----CTCGTTCGCGTTCCAAACATTCACATAAAAGGAGAACA 203
consensus_10632#1 TTTTTTTGTTACAGATTTTACACTCGTTATTGTCCTATTCATTTTCATCTTTTCA-ACTG 446
consensus_10632#3 TTTTTTTGTTACAGATTTTACACTCGTTATTGTCCTATTCATTTTCATCTTTTCA-ACTG 321
consensus_10632#6 ------------------------------------------------------------
consensus_10632#2 CATCTCTCCTATAACTCCA--ACACTTAGCTGATGGTGATATCCTTGTCTGTCGAACCTT 377
consensus_10632#0 AATTCACGGCATTCGCATCGCAG-----TCGTAAAAGAGATTTTCGTGGTTCGTCAACAG 588
consensus_10632#5 AATTCACGGCATTCGCATCGCAG-----TCGTAAAAGAGATTTTCGTGGTTCGTCAACAG 205
consensus_10632#4 AATTCACGGCATTCGCATCGCAG-----TCGTAAAAGAGATTTTCGTGGTTCGTCAACAG 258
consensus_10632#1 TCTCCTTGACAATTTTGTTTCCAATACTTTCTTGCAAATGTTCTCACTAACAGCAAACGA 506
consensus_10632#3 TCTCCTTGACAATTTTGTTTCCAATACTTTCTTGCAAATGTTCTCACTAACAGCAAACGA 381
consensus_10632#6 --------------------------ACTGGCGGTAAATTTTTTTTAAGTAAACAAAGGA 34
consensus_10632#2 AATTCATGATGTCGTTA------------CATAACATGTTCGATTGTTTATATATATCGC 425
* * *
consensus_10632#0 CTTCTTCAGAATCTTCAAGTTCTAATCATG-GGAACCAAAAAGTAGGATTCTCTCGATTC 647
consensus_10632#5 CTTCTTCAGAATCTTCAAGTTCTAATCATG-GGAACCAAAAAGTAGGATTCTCTCGATTC 264
consensus_10632#4 CTTCTTCAGAATCTTCAAGTTCTAATCATG-GGAACCAAAAAGTAGGATTCTCTCGATTC 317
consensus_10632#1 ACTGATGATCTCCTACGGGACTTCGTGTTCCGGTATTGAATAATATTACTGCTATAATTA 566
consensus_10632#3 ACTGATGATCTCCTACGGGACTTCGTGTTCCGGTATTGAATAATATTACTGCTATAATTA 441
consensus_10632#6 TGGGTCCTTTGTCCCCA--TTTTTATTTGA-------AAAAAAAATTAATCATTTGACCA 85
consensus_10632#2 ACTACTGTCTCCCTTCATTTTGGTAATGAGTGAAATCTTTGAAAAACATTGTCTCAGTCA 485
* * * * * *
consensus_10632#0 AGTCGATCCTCA---GCAGA--CCACATTAAAAATGTTCGGTCACCAAAACATTATTNTG 702
consensus_10632#5 AGTCGATCCTCA---GCAGA--CCACATTAAAAATGTTCGGTCACCAAAACATTATTTTG 319
consensus_10632#4 AGTCGATCCTCA---GCAGA--CCACATTAAAAATGTTCGGTCACCAAAACATTATTTTG 372
consensus_10632#1 GGCAGAGTACTGTACACAGAAGCCAGTTTACTAATCAAATCTTTCTCATACAGTTACTCT 626
consensus_10632#3 GGCAGAGTACTGTACACAGAAGCCAGTTTACTAATCAAATCTTTCTCATACAGTTACTCT 501
consensus_10632#6 GTTGGGTTGTTG-----GGAAACCGAATTTTTCCTTACCTGAAAAGTAAAGACAAATTGG 140
consensus_10632#2 GTTTTATTTATAATTATACATCTGTGATTTTTATTATCTGGGAAATCATGCCTCTCATTC 545
* ** * *
consensus_10632#0 CGAA-------GTCCA---GTCATTCGA--AACA----TTCTCATCATANAAGTCACCAT 746
consensus_10632#5 CGAA-------GTCCA---GTCATTCGA--AACA----TTCTCATCATAAAAGTCACCAT 363
consensus_10632#4 CGAA-------GTCCA---GTCATTCGA--AACA----TTCTCATCATAAAAGTCACCAT 416
consensus_10632#1 CAAGTTTATCTGTCTA---TTTTTCCTATCATTA----TTCTGTTCAACTTACTGANCAT 679
consensus_10632#3 CAAGTTTATCTGTCTA---TTTTTCCTATCATTA----TTCTGTTCAACTTACTGACAAT 554
consensus_10632#6 CGAT-------AAATA---GGGAACCCA--AAT-----TACTGGCTGAAAAA---AGGGT 180
consensus_10632#2 CTATGCTTCAAATTCAAGTGTTAATCAGCTATCGTGGGTCGTGGGTGCGATAAAAATGAT 605
* * * * * * * * * *
consensus_10632#0 TNAGATTGTACACTTTCCT-----GTATTTAAGTGT-AACCCCTGTCTCGTTNG---CAC 797
consensus_10632#5 TAGATTTGTACACTTTCCT-----GTATTAAGTGTT-AACCTGTCTTCGGTTTG---CAC 414
consensus_10632#4 TAGATTTGTACACTTTCCT-----GTATTAAGTGTT-AACCTGTCTTCGGTTTG---CAC 467
consensus_10632#1 ATTTCAAGTAAATCTTAAA-TAGAGTATCTATTTTTTGAAAATTATTAAATTCA--CCTT 736
consensus_10632#3 ATTTCAAGTAAATCTTAAAATAGAGTATCTATTTTTTGAAATTTATTAATTTCAACCTTC 614
consensus_10632#6 GAAATTAATAAATTTCAAAAAATAAATCCTTTTTTTTAAAATTTACTTGAAATATTGGCA 240
consensus_10632#2 TTCAAGTGGGCCTTTTTTTTCTTCCTAGGATTGTTTTGCGTAGTTTAACATTCTGTCCAA 665
* * *
consensus_10632#0 TTNATATC-CTTAGT-CACA-GTGAGAAT---TCAGACAGGGTATTT-ATCATTT-GGTA 849
consensus_10632#5 TTATAATC-CTTAGTTCACAAGTGAGATT---TCAGACAGGTAATTTTATCATTT-GGTA 469
consensus_10632#4 TTATAATC-CTTAGTTCACAAGTGAGATT---TCAGACAGGTAATTTTATCATTT-GGTA 522
consensus_10632#1 CTTCAGTC-AGTA-TTTGCGT-CCCTATT-A-TCGNNCATT-GTCTT-ACTTTT--AGTA 787
consensus_10632#3 TTTCAGTC-AGTAATTTGCGTTCCCTATTTA-TCGTCAATTTGTCTTTACTTTTCAGGTA 672
consensus_10632#6 GTAAGTTG-AACAAAATATTGATGGGAAAAA-TAGACAGATAACCTTGAAAGTAACTGTA 298
consensus_10632#2 TAAAAATCTAATAACTTGATGTAGTGATCAACTAAGTCAATCACTATGATCGTTG-AGTA 724
* * * * * * * ***
consensus_10632#0 TG-AAATATT-CGTTNCCCCAC----ACACA-CTGCTCAT----------AGAAC--TAA 890
consensus_10632#5 TGGAAATATT-CGGTTTCCCAAC--AACACAACTGCTCAT----------ATGATCTTAA 516
consensus_10632#4 AGTGAATTTAATGACTTTCAAATCAAATCTATTTTCTGATGATTGACTTAACAATAGTAA 582
consensus_10632#1 TG-AANTATT-CGTTNCCACA------CACA-CTGCTCA-----------ATGAACTAA- 826
consensus_10632#3 TGGAAATATT-CGGTTTCCCAAC--AACACAACTGCTCAT----------ATGATCTTAA 719
consensus_10632#6 TGAAAAAA---------------------------------------------------- 306
consensus_10632#2 TA-GGTTTTTCTGGCCTTTTAATGTTCAATGAATTCTGGGAGCATTTAGAGTACTCTGCA 783
consensus_10632#0 NTNCTTTNAT---TAAATAGG-GTACA--GTACCA--TCATT--GTCTACT-AAATAT-- 937
consensus_10632#5 TTTCTTTTTCATATAAATATGTGTACAAAGTACCAA-TCATTT-GTCTACTTAAAAATAA 574
consensus_10632#4 CATGTTATTNTATTCATCTTGTTTCGGCAGTACAAAGTTACTGCATTCACTGTAAAATAC 642
consensus_10632#1 -TTCTTTT----ATAAAAATGNG-ACAAGA---CCA-TCATTG---CTACTTAA------ 867
consensus_10632#3 TTTCTTTTTCATATAAATATGTGTACAAAGTACCAA-TCATTT-GTCTACTTAAAAATAA 777
consensus_10632#6 ------------------------------------------------------------
consensus_10632#2 TATTTTTAGACAGCTTTTCTAATAATTTCATCGACATTTCATTCTACAGCTTAACAAATG 843
consensus_10632#0 --------------------------
consensus_10632#5 TCTA---------------------- 578
consensus_10632#4 AGTGAATCTGAATTTAATATATCAGC 668
consensus_10632#1 --------------------------
consensus_10632#3 --------------------------
consensus_10632#6 --------------------------
consensus_10632#2 CTTTAGNC------------------ 851
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||