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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 718 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTAAATATCAACAACTGTAATGTGACAAATGTTGGAGTAGATACAAAAGCTGTTACTCAATTACTAACCCATATTGCCCCATCAAAAAAACAATAAAAATGAATAATATATGTCCATTTCACTGAACTATTTGATTAAAGACATGCGTATTTGTTCTTTTGCATTTTGGATAGCCTGTGCGACGGTTTGCTCTCCAAGTGGGATATCATCTGTCCTTGCACCAACTCGAGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC-TGATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAATAATTCATTTTCGTTAGCATCCCCAACGACATAAAAGTAAAGATCGCCTACGTTACGATAAACACATGTCGCGCCGTCCAGCAACGTGATTTCCGCACCGTTAGTTTTGCTTGTTTTCTTGAATAGTTTCGACTCGAATTCGAGTTGGAGCTTAACAGATGGAAACGATGAGTCATAATACTTCGCTAAAATGCGCTTCCCTTCACTATCTAAGATGAGTATACTATTAATAGAATATAAGGATGGCTCCAGGAGCATTATGGTCAACAAGTGTACTGGTTGGCACGATGTCAATGAGT]
[+] EMBL AI395178 [TTTTTTTTTTTTTTTTTTTTTTTTTAAATATCAACAACTGTAATGTGACAAATGTTGGAGTAGATACAAAAGCTGTTACTCAATTACTAACCCACATTGCCCCATCAATAAAACACTAAATATGAATAATATATGTCCATTTCACTGAACTATTTGATTAAAGACATGCGTATTTGTTCTTTTGCATTTTGGATAGCCTGTGCGACGGTTTGCTCTCCAAGTGGGATATCATCTGTCCTTGCACCAACTCGAGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAATAATTCATTTTCGTTAGCATCGCCAACGACATAAAAGTAAAGATCGCCTAAGTTACGATAAACA ATGTCGCGCCGTCCAACAACGTGATTTCCGCAACGTTAGTTTTGCTTGGTTCCTTAAAa ]
[+] EMBL CD077230 [ CAACTGTAATGTGACAAATGTTGGAGTAAATACAAAAGCTGTTACTCAATTACTAACCCATATTGCCCCATCAAAAAAACAATAAAAATGAATAATATATGTCCATTTCACTGAACTATTTGATTAAAGACATGCGTATTTGTTCTTTTGCATTTTGGATAGCCTGTGCGACGGTTTGCTCTCCAAGTGGGATATCATCTGTCCTTGCACCAACTCGAGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAAAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAATAATTCATTTTCGTTAGCATCCCCAACGACATAAAAGTAAAGATCGCCTACGTTACGATAAACACATGTCGCGCCGTCCAGCAACGTGATTTCCGCACCGTTAGTTTTGCTTGTTTTCTTGAATAGTTTCGACTCGAATTCGAGTTGGAGCTTAACAGATGGAAACGATGAGTCATAATACTTCGCTAAAATGCGCTTC ]
[+] EMBL CD073539 [ CAACTGTAATGTGACAAATGTTGGAGTAGATACAAAAGCTGTTACTCAATTACTAACCCATATTGCCCCATCAAAAAAACAATAAAAATGAATAATATATGTCCATTTCACTGAACTATTTGATTAAAGACATGCGTATTTGTTCTTTTGCATTTTGGATAGCCTGTGCGACGGTTTGCTCTCCAAGTGGGATATCATCTGTCCTTGCACCAACTCGAGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCA ]
[+] EMBL CD074924 [ CAACTGTAATGTGACAAATGTTGGAGTAGATACAAAAGCTGTTACTCAATTACTAACCCATATTGCCCCATCAAAAAAACAATAAAAATGAATAATATATGTCCATTTCACTGAACTATTTGATTAAAGACATGCGTATTTGTTCTTTTGCATTTTGGATAGCCTGTGCGACGGTTTGCTCTCCAAGTGGGATATCATCTGTCCTTGCACCAACTCGAGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAATAATTC ]
[-] EMBL CD079086 [ AACTGTAATGTGACAAATGTTGGAGTAGATACAAAAGCTGTTACTCAATTACTAACCCATATTGCCCCATCAAAAAAACAATAAAAATGAATAATATATGTCCATTTCACTGAACTATTTGATTAAAGACATGCGTATTTGTTCTTTTGCATTTTGGATAGCCTGTGCGACGGTTTGCTCTCCAAGTGGGATATCATCTGTCCTTGCACCAACTCGAGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAG ]
[-] EMBL CD094987 [ TTTGCATTTTGGATAGCCTGTGCGACGGTTTGCTCTCCAAGTGGGATATCATCTGTCCTTGCACCAACTCGAGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAATAATTCATTTTCGTTAGCATCCCCAACGACATAAAAGTAAAGATCGCCTACGTTACGATAAACACATGTCGCGCCGTCCAGCAACGTGATTTCCGCACCGTTAGTTTTGCTTGTTTTCTTGAATAGTTTCGACTCGAATTCGAGTCGGAGCTTAACAGATGGAAACGATGAGTCATAATACTTCGCTAAAATGCGCTTCCCTTCACTATCTAAGATGAGTATACTATTAATAGAATATAAGGATGGCTCCAGGAGCATTATGGTCAACAAGTGTACTGGTTGGC ]
[-] EMBL CD095092 [ tnTGCATTTGGGATAGCCTGTGCGACGGTNTGCTCTCCAAGTGGGATATCATCTGTCCTTGCACCAACTCGAGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAATAATTCATTTTCGTTAGCATCCCCAACGACATAAAAGTAAAGATCGCCTACGTTACGATAAACACATGTCGCGCCGTCCAGCAACGTGATTTCCGCACCGTTAGTTTTGCTTGTTTTCTTGAATAGTTTCGACTCGAATTCGAGTTGGAGCTTAACAGATGGAAACGATGAGTCATAATACTTCGCTAAAATGCGCTTCCCTTCACTATCTAAGATGAGTATACTATTAATAGAATATAAGGATGGCTCCAGGAGCATTATGGTCAACAAGTGTACTGGTTGGC ]
[-] EMBL CD121709 [ CAAGTGGGATATCATCTGTCCTTGCACCAACTCGAGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGAC ]
[+] EMBL CD132963 [ GAGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAATAATTCATTTTCGTTAGCATCCCCAACGACATAAAAGTAAAGATCGCCTACGTTACGATAAACACATGTCGCGCCGTCCAGCAACGTGATTTCCGCACCGTTAGTTTTGCTTGTTTTCTTGAATAGTTTCGACTCGAATTCGAGTTGGAGCTTAACAGATGGAAACGATGAGTCATAATACTTCGCTAAAATGCGCTTCCCTTCACTATCTAAGATGAGTATACTATTAATAGAATATAAGGATGGCTCCAGGAGCATTATGGTCAACAAGTGTACTGGTTG ]
[-] EMBL CD132808 [ AGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAATAATTCATTTTCGTTAGCATCCCCAACGACATAAAAGTAAAGATCGCCTACGTTACGATAAACACATGTCGCGCCGTCCAGCAACGTGATTTCCGCACCGTTAGTTTTGCTTGTTTTCTTGAATAGTTTCGACTCGAATTCGAGTTGGAGCTTAACAGATGGAAACGATGAGTCATAATACTTCGCTAAAATGCGCTTCCCTTCACTATCTAAGATGAGTATACTATTAATAGAATATAAGGATGGCTCCAGGAGCATTATGGTCAACAAGTGTACTGGTTGGCACGATGTCAATGAGT]
[-] EMBL CD133320 [ AGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAATAATTCATTTTCGTTAGCATCCCCAACGACATAAAAGTAAAGATCGCCTACGTTACGATAAACACATGTCGCGCCGTCCAGCAACGTGATTTCCGCACCGTTAGTTTTGCTTGTTTTCTTGAATAGTTTCGACTCGAATTCGAGTTGGAGCTTAACAGATGGAAACGATGAGTCATAATACTTCGCTAAAAAGCGCTTCCCTTCACTATCTAAGATGAGTATACTATTAATAGAATATAAGGATGGCTCCAGGAGCATTATGGTCAACAAGTGTACTGGTTGGCACGATGT ]
[-] EMBL CD159111 [ AGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGAC ]
[-] EMBL CD159089 [ AGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGAC ]
[-] EMBL CD121064 [ AGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGAC ]
[-] EMBL CD121090 [ AGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGAC ]
[-] EMBL CD121725 [ AGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAAC TGATCGTTTCAGAGCTTGGCTGAC ]
[+] EMBL CD133248 [ TGCGTGGGACTCTAACAGTATACCATTATGACACAGTTCATCATCTATAAGGAAAATTAACTCTATATTATCCATCAGTGTTTTCTTTTCAACGTGA GGTTACAAAGCTGGGCTGACAGAATCGCACAAGCACTGAAGGGCACTGACGAGTAATAATCCATTTTCGTTAGCATCCCCAACGACATAAAAGTAAAGATCGCCTACGTTACAATAAACACATGTCGCGCCGTCCAGCAACGTGATTTCCGCACCGTTAGTTTTGCTTGTTTTCTTGAATAGTTCCGACTCGAATTCGAGTTGGAGCTTAACAGATGGAAACGATGAGTCATAATACTTCGCTAAAATGCGCTTCCCTTCACTATCTAAGATGAGTATACTATTAATAGAATATAAGGATGGCTCCAGGAGCATTATGGTCAACAAGTGTACTGGTTGGCACGATGTCAATGAG ]
[+] EMBL CD121156 [ AGATCGCCTACGTTACGATAAACACATGTCGCGCCGTCCAGCAACGTGATTTCCGCACCGTTAGTTTTGCTTGTTTTCTTGAATAGTTTCGACTCGAATTCGAGTTGGAGCTTAACAGATGGAAACGATGAGTCATAATACTTCGCTAAAATGCGCTTCCCTTCACTATCTAAGATGAGTATACTATTAATAGAATATAAGGATGGCTCCAGGAGCATTATGGTCAACAA ]
consensusID : consensus_10639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence
[AACTGTAATGTGACAAATGTTGGAGTAGACACAAAAGCTGTTACTCAATTACTAACCCATATTGCCCCATCAAAAAAACAATAAAAATGAATAATATATGTCCCCTTTCCTGAACTATTTGATTAAAGACATGCGTATTTGTTCTTTTGCATTTTGGATAACCTGTGCGACGGTTTGCTCTCCAAGTGGGATATCATCTGTCCTTGCACCAACTCGAGACATCAACGCGGTTGCGTCGGGCTCTTACACTGTACCCATATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAACTGATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAATAATTCACCTCGTGCCGAATTNTTGGCCTGGAG]
[-] EMBL CD081101 [AACTGTAATGTGACAAATGTTGGAGTAGACACAAAAGCTGTTACTCAATTACTAACCCATATTGCCCCATCAAAAAAACAATAAAAATGAATAATATATGTCCCCTTTCCTGAACTATTTGATTAAAGACATGCGTATTTGTTCTTTTGCATTTTGGATAACCTGTGCGACGGTTTGCTCTCCAAGTGGGATATCATCTGTCCTTGCACCAACTCGAGACATCAACGCGGTTGCGTCGGGCTCTTACACTGTACCCATATGACACAGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAACTGATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAATAATTCACCTCGTGCCGAATTNTTGGCCTGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10639#0 TTTTTTTTTTTTTTTTTTTTTTTTTAAATATCAACAACTGTAATGTGACAAATGTTGGAG 60
consensus_10639#1 -----------------------------------AACTGTAATGTGACAAATGTTGGAG 25
*************************
consensus_10639#0 TAGATACAAAAGCTGTTACTCAATTACTAACCCATATTGCCCCATCAAAAAAACAATAAA 120
consensus_10639#1 TAGACACAAAAGCTGTTACTCAATTACTAACCCATATTGCCCCATCAAAAAAACAATAAA 85
**** *******************************************************
consensus_10639#0 AATGAATAATATATGTCCATTTCACTGAACTATTTGATTAAAGACATGCGTATTTGTTCT 180
consensus_10639#1 AATGAATAATATATGTCCCCTTTCCTGAACTATTTGATTAAAGACATGCGTATTTGTTCT 145
****************** ** ************************************
consensus_10639#0 TTTGCATTTTGGATAGCCTGTGCGACGGTTTGCTCTCCAAGTGGGATATCATCTGTCCTT 240
consensus_10639#1 TTTGCATTTTGGATAACCTGTGCGACGGTTTGCTCTCCAAGTGGGATATCATCTGTCCTT 205
*************** ********************************************
consensus_10639#0 GCACCAACTCGAGACATCAACGCGGTTGCGTCGGACTCTAACAGTATACCATTATGACAC 300
consensus_10639#1 GCACCAACTCGAGACATCAACGCGGTTGCGTCGGGCTCTTACACTGTACCCATATGACAC 265
********************************** **** *** * **** ********
consensus_10639#0 AGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAACT 360
consensus_10639#1 AGTTCATCAACTATAAGGAAAATTAAATCTAGATTATCCATCAGTGTTTTCTTTTCAACT 325
************************************************************
consensus_10639#0 GATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAAT 420
consensus_10639#1 GATCGTTTCAGAGCTTGGCTGACAGAATCGTACAAGCACTGAAGGGCACTGACGAGTAAT 385
************************************************************
consensus_10639#0 AATTCATTTTCGTTAGCATCCCCAACGACATAAAAGTAAAGATCGCCTACGTTACGATAA 480
consensus_10639#1 AATTCACCTCGTGCCGAATTNT---TGGCCTGGAG------------------------- 417
****** * * ** * * * *
consensus_10639#0 ACACATGTCGCGCCGTCCAGCAACGTGATTTCCGCACCGTTAGTTTTGCTTGTTTTCTTG 540
consensus_10639#1 ------------------------------------------------------------
consensus_10639#0 AATAGTTTCGACTCGAATTCGAGTTGGAGCTTAACAGATGGAAACGATGAGTCATAATAC 600
consensus_10639#1 ------------------------------------------------------------
consensus_10639#0 TTCGCTAAAATGCGCTTCCCTTCACTATCTAAGATGAGTATACTATTAATAGAATATAAG 660
consensus_10639#1 ------------------------------------------------------------
consensus_10639#0 GATGGCTCCAGGAGCATTATGGTCAACAAGTGTACTGGTTGGCACGATGTCAATGAGT 718
consensus_10639#1 ----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||