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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 454 fasta sequence
[GTCTATTCGTTTGCAGGCGTGATGGCGGCAAAGCGTAAAGGAGCTAGGAAGGTAG-TCGAAGAACAAGTTTCTTTGGGTCCTCAAGTTGCAGAG-GGCGAATTCGTATTCGGAGTTTGCCACATCTATGCATCATTCAATGATACATTTGTTCATGTAACGGATGCGACAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGTCGCATAGAAGATGTCACACCATACATGACCTACCTA-ATGCACATNCGTT]
[+] EMBL BG930209 [GTCTATTCGTTTGCAGGCGTGATGGCGGCAAAGCGTAAAGGAGCTAGGAAGGTAG TCGAAGAACAAGTTTCTTTGGGTCCTCAAGT ]
[-] EMBL CD163042 [ TGCAGGCGTGATGNCGGCANAGCGTTAAGNAGCTAGGAAGGTAG TCGAAGAACAAGTTTCTTTGGGTCCTCAAGTGGCAGAG GGCGAATTCGTATTCGGAGTTGCCCACATCTATGCATCATTCAATGATACATTTGTTCATGTAACGGATGNGACAGGTGCTGAACCAATCGTTCGTGTCACGGGTGGCATGAGAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGGATAAACGCCCTACATATCCGTA ]
[-] EMBL CD119042 [ tgcCAGGCGTGATGCCGGCAAAGCGTAAAGGAGCTAGGAAGGTAG TCGAAGAACAAGTTTCTTTGGTTCCTCAAGTTGCAGAG GGCGAATTCGTATTCGGAGTTTGCCACATCTATGCATCATTCAATGATACATTTGTTCATGTAACGGATGCGACAAGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGT ]
[-] EMBL CD163083 [ CAGGCGTGATGGCGGCAAAGCGTAAAGGAGCTAGGAAGGTAG TCGAAGAACAAGTTTCTTTGGGTCCTCAAGTTGCAGAG GGCGAATTCGTATTCGGAGTTTGCCACATCTATGCATCATTCAATGATACATTTGTTCATGTAACGGATGCGACAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTA ]
[+] EMBL SMT14564 [ CGGCAAAGCGTAAAGGAGCTAGGAAGGTAG TCGAAGAACAAGTTTCTTTGGGTCCTCAAGTTGCAGAG GGCGAATTCGTATTCGGAGTTTGCCACATCTATGCATCATTCAATGATACATTTGTTCATGTAACGGATGCGACAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGANCAAAGGTCCGTAC ]
[+] EMBL CD127240 [ catagtAGGTAGNTCGAAGAACATTTTTCTTTGGGTCCTCAAGTTGCAGAC GGCGAATTCGTATTCGGAGTTTGCCACATCTATGCATCATTCAATGATACATTTGTTCATGTAACGGATGCGACAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGTCGCATAGAAGATGTCACACCATACATGACCTACCTA A ]
[+] EMBL CD127286 [ AGGTAGNTCGAAAAACATTTTTCTTTGGGTCCTCAAGTTGCAGAGCGGCGAATTCGTATTCGGAGTTTGCCACATCTATGCATCATTCAATGATACATTTGTTCATGTAACGGATGCGACAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGTCGCATAGAAGATGTCACACCATACATGACCTACCTA A ]
[+] EMBL CD128090 [ AACAAGTTTCTTTGGGTCCTCAAGTTGCAGAG GGCGAATTCGTATTCGGAGTTTGCCACATCTATGCATCATTCAATGATACATTTGTTCATGTAACGGATGCGACAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACCTATCCGTATCCGAGCAACTGGTGGAACAAAGGTCTGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGTCGCATAGAAGATGTCACACCATACATGACCTACCTA A ]
[-] EMBL CD127582 [ aTGCAGAG GGCGAATTCGTATTCGGAGTTTGCCACATCTATGCATCATTCAATGATACATTTGTTCATGTAACGGATGCGACAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGTCGCATAGAGGATGTCACACC TATTTCACCTA CTATGTGCACATNCGTT]
[-] EMBL CD192158 [ ATTCGTATTCGGAGTTTGCCACATCTATGCATCATTCAATGATACATTTGTTCATGTAACGGATGCGACAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAGGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGT ]
[-] EMBL CD134837 [ TCAATGATACATTTGTTCATGTAACGGATGCGACAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGT ]
[+] EMBL CD134854 [ ATGATACATTTGTTCATGTAACGGATGCGACAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGG ]
[-] EMBL CD135653 [ CGGATGCGACAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTA CCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGTC ]
[+] EMBL BG932704 [ GCTGATACAATCGCTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTCGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGC ]
[-] EMBL CD120719 [ GAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATC ]
[-] EMBL CD134835 [ AAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGT ]
[+] EMBL CD134958 [ GCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCATGAATGCGCATCGG ]
consensusID : consensus_10653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 381 fasta sequence
[TCATTCCAAATGATACATTTGTTCATGTAACGGATGCGACAGNTGCTGAAACAANCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATTCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGNCC-CTTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGTCGCATAGAAGATGTCACACCTATTCCAACTGATAGCACGCGACGCAAAGGAGGTCGTCGAGGTCGCCGTTTGTAATAACTCACGTGTCGAATACAATATGGTTT]
[-] EMBL SMT14563 [TCATTCCAAATGATACATTTGTTCATGTAACGGATGCGACAGNTGCTGAAACAANCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATTCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGNCC CTTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGTCGCATAGAAGATGTCACACCTATTCCAACTGATAGCACGCGACGCAAAGGAGGTCGTCGAGGTCGCCGTTTGTAATAACTCACGTGTCGAATACAATATGGTTT]
[+] EMBL BG932528 [ gAGGTGCTGAAACAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACGCCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTGCGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGTCGCATAGAAGATGTCACACCTATTCCAACTGATAGCACGCGACGCAAAGGAGGTCGTCGAGGTCGCCGTTTGTAATAACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10653#0 GTCTATTCGTTTGCAGGCGTGATGGCGGCAAAGCGTAAAGGAGCTAGGAAGGTAGTCGAA 60
consensus_10653#1 ------------------------------------------------------------
consensus_10653#0 GAACAAGTTTCTTTGGGTCCTCAAGTTGCAGAGGGCGAATTCGTATTCGGAGTTTGCCAC 120
consensus_10653#1 ------------------------------------------------------------
consensus_10653#0 ATCTATGCATCATTC--AATGATACATTTGTTCATGTAACGGATGCGACAGGTGCTGAAA 178
consensus_10653#1 ---------TCATTCCAAATGATACATTTGTTCATGTAACGGATGCGACAGNTGCTGAAA 51
****** ********************************** ********
consensus_10653#0 CAATCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGT 238
consensus_10653#1 CAANCGTTCGTGTCACGGGTGGCATGAAAGTCAAAGCCGATCGCGATGAATCTAGTCCGT 111
*** ********************************************************
consensus_10653#0 ATGCTGCTATGCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACG 298
consensus_10653#1 ATGCTGCTATTCTTGCAGCTCAAGATGTTGCAGAAAAATGCAAAACATTGGGTATAAACG 171
********** *************************************************
consensus_10653#0 CCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGTCCTGCTG 358
consensus_10653#1 CCCTACATATCCGTATCCGAGCAACTGGTGGAACAAAGGTCCGTACCCCAAGNCCC-TTG 230
**************************************************** ** **
consensus_10653#0 CGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGTCGCATAGAAGATG 418
consensus_10653#1 CGCAATCTGCCCTACGAGCCCTCGCACGTTCAGGAATGCGCATCGGTCGCATAGAAGATG 290
************************************************************
consensus_10653#0 TCACACCATACATGACC-----TACCTAATGCACATNCGTT------------------- 454
consensus_10653#1 TCACACCTATTCCAACTGATAGCACGCGACGCAAAGGAGGTCGTCGAGGTCGCCGTTTGT 350
******* ** ** * *** * * *
consensus_10653#0 -------------------------------
consensus_10653#1 AATAACTCACGTGTCGAATACAATATGGTTT 381
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||