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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1023 fasta sequence
[GCTCCTACCGACTGACCATCACATGTTTGTGTAATGAACCAATAAAAGAAAATATCTTCACATGTATCTAATTCATCTATAAATGCTTTGATAGGACTTGCTAAAAGATCTGTATACAGATGTAAATAATGTTTATGGAAAAACACTGATGAAAAACTAGCAGAAAAGGATTGATTGTTATCAAATAAATTCCAGATAGATTGATCAGATAAGCTTACTAGTCGTTCAGGATTTTGGCACCATAACTCAAATGCACGTTCGACTGATTCAACCGAAGGTAAGCATGTATCTTCTTCAATAGAAAAAATAGCTTCAGTTCTTATTTGTCGATAAGGAAAAAAACGACCATTCACTGAACCATAAGCTGAACGGACTATACTTAAAGGAACTATTAAAGATGGCCATAATGTAGAATCAGGAACTGGATATATTTTATTTGTCCATACAACAA-CAA-TCCGTCTCAAGGATTTTACAGATTGAATTGATTTTAACAACATACAAAGT-AGTGTGAAATGATTATGAGCTCGAATGAGAGCGGTAAATCCAGTACGTGGAAAAGCTNTAGCTGGGTAAAACAATACTGGAGATATAGGTAATCCAACCTCAGAATAATTAGGATAATTCCATTCAGCATAAGACCGTGAATATTGAGGAAATACACGATCATTTAATATATCCAAAGTGGTCAATATAATTTTCTCTATTGATGAAAAATAACGTTGATAAATAAACATTATCTGTTTTCGAAGAAGAGATTTTTCTTTTGATGAATATGTTGATAAGATAGATGGAATCTTTTGAAATTTAACTTGTGGAATACGAATAGCAATTCAGTTTACTTTATTATGAGCAACATTAATCTAATCAGTATGAATCAATTTGTTTCAAACACTGTCACCGACACTGAAAATGTGTTTCAAGCTATCTTGTTACTAGTAGCGTTTTCATCGCCTGAGGCTTTAGAAAAACACTGCCAGAAGATTTAAAAGAGCAACTGGCTGGCAATTAGAGGTGTAAAATCCT]
[+] EMBL CD160485 [GCTCCTACCGACTGACCATCACATGTTTGTGTAATGAACCAATAAAAGAAAATATCTTCACATGTATCTAATTCATCTATAAATGCTTTGATAGGACTTGCTAAAAGATCTGTATACAGATGTAAATAATGTTTATGGAAAAACACTGATGAAAAACTAGCAGAAAAGGATTGATTGTTATCAAATAAATTCCAGATAGATTGATCAGATAAGCTTACTAGTCGTTCAGGATTTTGGCACCATAACTCAAATGCACGTTCGACTGATTCAACCGAAGGTAAGCATGTATCTTCTTCAATAGAAAAAATAGCTTCAGTTCTTATTTGTCGATAAGGAAAAAAACGACCATTCACTGAACCATAAGCTGAACGGACTATACTTAAAGGAACTATTAAAGATGGCCATAATGTAGAATCAGGAACTGGATATATTTTATTTGTCCATACAACAA CAA TCCGTCTCAAGGATTTTACAGATTGAATTGATTTTAACAACATACAAAGT AGTGTGAAATGATTATGAGCTCGAATGAGAGCGGTAAATCCAGTACGTGGAAAAGCTNTAGCTGGGTAAAACAATACT ]
[-] EMBL CD079976 [ TACTTAAAGGAACTATTAAAGATGGCCATAATGTAGAATCAGGAACTGGATATATTTTATTTGTCCATACAACAACCAATTNCGTCTCAAGGATTTTACAGATTGAATTGATTTTAACAACATACAAAGTAAGTGTGAAATGATTATGAGCTCGAATGAGAGCGGTAAATCCAGTACGTGGAAAAGCTTTAGCTGGGTAAAACAATACTGGAGATATAGGTAATCCAACCTCAGAATAATTAGGATAATTCCATTCAGCATAAGACCGTGAATATTGAGGAAATACACGATCATTTAATATATCCAAAGTGGTCAATATAATTTTCTCTATTGATGAAAAATAACGTTGATAAATAAACATTATCTGTTTTCGAAGAAGAGATTTTTCTTTTGATGAATATGTTGATAAGATAGATGGAATCTTTTGAAATTTAACTTGTGGAATACGAATAGCAATTCAGTTTACTTTATTATGAGCAACATTAATCTAATCAGTATGAATCAATTTGTTTCAAACACTGTCACCGACACTGAAAATGTGTTTCAAGCTATCTTGTTACTAGTAGCGTTTTCATCGCCTGAGGCTTTAGAAAAACACTGCCAGAAGATTTAAAAGAGCAACTGGCTGGCAATTAGAGGTGTAAAATCCT]
consensusID : consensus_10658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 907 fasta sequence
[ANAATTCGGCACGAGGGCAGAAGTCTGTAAAGAAATTTCATGGGTCTCAAAAGTAAAGCTAAATGAGGGCTCCAAGCCGAAGGTGTCAACCAAAAAGCGTAAATTCTTCTTCATTTCCATAATTTCTTTAGCCAAGTTATTACCTTCAATTAGATTATCCGACCAGCCCCCTGCACGTAAACCACAATGGACAAATAGAGAGCGTGTCCTCATTATCTCGTCGAGAGGCGTTTCCTACATAGGCCGGCACTTGTTGAAGGATTTATTACACATGATGCCCCATGGAAAGACAGATTCAAAACTTGATCACAAGAAAGGAATAACGGT-ACTAAACGAACTCGCTGAAATGAGCAACACTAACAAGGTTATTTACTTTGAGGCTCGCAAG-AAAAAAGACCTATACTTGTGGCTTAGTTGTGTACCCAATGGTCCATCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGGAAACTGTTTAAAAAGCAGTCGCCCTATACTGGCCTTCGATTCATCTTTCGAAGAATCCGATAAACCTCACATGAACTTGATCCGTG-AATTGTTTATACAAACTCTTGGCACTCCAAATCATCATCCACGTTCTCAGCCATATATAGACAAGACATTTACGTTTGTTAACTNTAATGATCGTATATGGTTTAGAGTTTATCAGATTGCTGAGGAAAGTGAGCACTAGTCGAAAGTGGTCACGCTTTCACTAATNCATACGTATATTTCTGGAGCTNNTGTGTGCATACTGTATCTAATCAATACATTCTCTAATTAATCGATACTCTGGTGCTATAACTGCNNNATCTGACGTCACTATAAACGGAACCGGAGCGTAAAAGATTAAAGAATNACCAGTGTGATNNAGAAATTGATAATN]
[+] EMBL CD081454 [ANAATTCGGCACGAGGGCAGAAGTCTGTAAAGAAATTTCATGGGTCTCAAAAGTAAAGCTAAATGAGGGCTCCAAGCCGAAGGTGTCAACCAAAAAGCGTAAATTCTTCTTCATTTCCATAATTTCTTTAGCCAAGTTATTACCTTCAATTAGATTATCCGACCAGCCCCCTGCACGTAAACCACAATGGACAAATAGAGAGCGTGTCCTCATTATCTCGTCGAGAGGCGTTTCCTACATAGGCCGGCACTTGTTGAAGGATTTATTACACATGATGCCCCATGGAAAGACAGATTCAAAACTTGATCACAAGAAAGGAATAACGGT ACTAAACGAACTCGCTGAAATGAGCAACACTAACAAGGTTATTTACTTTGAGGCTCGCAAG AAAAAAGACCTATACTTGTGGCTTAGTTGTGTACCCAATGGTCCATCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGGAAACTGTTTAAAAAGCAGTCGCCCTATACTGGCCTTCGATTCATCTTTCGAAGAATCCGATAAACCTCACATGAACTTGATCCGTG AATTGTTTATACAAACTCTTGGCACTCCAAATCATCATCCACGTTCTCAGCCATATATAGACAAGACATTTACGTTTGTTAACTNTAATGATCGTATATGGTTTAGAGTTTATCAGATTGCTGAGGAAAGTGAGCACTAGTCGAAAGTGGTCACGCTTTCACTAATNCATACGTATATTTCTGGAGCTNNTGTGTGCATACTGTATCTAATCAATACATTCTCTAATTAATCGATACTCTGGTGCTATAACTGCNNNATCTGACGTCACTATAAACGGAACCGGAGCGTAAAAGATTAAAGAATNACCAGTGTGATNNAGAAATTGATAATN]
[+] EMBL CD202653 [ aCAATTAGATTATCCGACCAGCCCCCTGCACGTAAACCACAATGGACAAATAGAGAGCGTGTCCTCATTATCTCGTCGAGAGGCGTTTCCTACATAGGCCGGCACTTGTTGAAGGATTTATTACACATGATGCCCCATGGAAAGACAGATTCAAAACTTGATCACAAGAAAGGAATAACGGT ACTAAACGAACTCGCTGAAATGAGCAACACTAACAAGGTTATTTACTTTGAGGCTCGCAAG AAAAAAGACCTATACTTGTGGCTTAGTTGTGTGCCCAATGGTCCATCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGGAAACTGTTTAAAAAGCAGTCGCCCTATACTGGCCTTCGATTCATCTTTCGAAGAATCCGATAAAC ]
[+] EMBL CD062804 [ AGACANATTCAAATCTTGATCACAAGAAAGGAATAACGGTCACTAAACGAACTCGCTGAAATGAGCAACACTAACAAGGTTATTTACTTTGAGGCTCGCAAGAAAAAAAGACCTATACTTGTGGCTTAGTCGTGTACCCAATGGTCCATCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGGAAACTGTTTAAAAAGCAGTCGCCCTATACTGGCCTTCGATTCATCTTTCGAAGAATCCGATAAACCTCAC ]
[+] EMBL CD157708 [ tAGGTGTAACGTG ACTAAACGAACTCGCTGAAATGAGCAACACTAACAAGGTTATTTACTTTGAGGCTCGCAAG AAAAAAGACCTATACTTGTGGCTTAGTTGTGTACCCAATGGTCCATCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGGAAACTGTTTAAAAAGCAGTCGCCCTATACTGGCCTTCGATTCATCTTTCGAAG ATCCGATAA ]
[+] EMBL CD157703 [ CTCGCTGAAATGAGCAACACTAACAAGGTTATTTACTTTGAGGCTCGCAAG AAAAAAGACCTATACTTGTGGCTTAGTTGTGTACCCAATGGTCCATCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGGAAACTGTTTAAAAAGCAGTCGCCCTATACTGGCCTTCGATTCATCTTTCGAAG ATCCGATAAACCTCACATGAACTTGATCCGTGAAATTG TTATACAAACTCTTGGCACTCCAAATCATCATCCACGTTCTCAGCCATATATA ]
[-] EMBL CD140064 [ TAACAAGGTTATTTACTTTGAGGCTCGCAAG AAAAAAGACCTATACTTGTGGCTTAGTTGTGTACCCAATGGTCCATCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGGAAACTGTTTAAAAAGCAGTCGCCCTATACTGGCCTTCGATTCATCTTTCGAAGAATCC ]
[-] EMBL AF155787 [ a AAAAAAGNCCTATACTTGTGGCTTAGTTGTGTACCCAATGGTCCATCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGGAAACTGTTTAAAAAGCAGTCGCCCTATACTGGCCTTCGATTCATCTTTCGAAGAA ]
consensusID : consensus_10658#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 906 fasta sequence
[TTATTTGATTTGAGANAACAGAAGCGGATGAGATATAAAT-ATGGTTCATATACNC-ACATAAATGAATAAGA-TAC-ATCTGTTGATCNAATAATAGAATAAACATATTTCAATACTGANAAAGATC-AACAAAATTAAATAATTAGATGAGCTGTAATACTACTACTATTATTAGTAGTAGTGGTATTAATAACATTAAAAATAGTACTTTTANTAAGGCACCAGCTGTTATATGAGAAATTTTCATTGGATAATAATTTGTTCGGTCAAATTGTTGCAAAAAAGATTTCAATCGACTTACATGAAATGAACAATGTTTCGGTGTAATATTACATTCACTTGATAAATGATATAGATTAGATGAATAATTGTGATTATTGTTTGTCGGTGAACGGTTACTGCCACTGCTGCTCAATACCGACTGACCATCAGATGTTTGTATAATGAACCAATAAAAGAAAATATCTTCACATGTATCTAATTCATCTATAAATGCTTTGATAGGACTTGCTAAAAGATCTGTATACAGATGTAAATAATGTTTATGGAAAAACACTGATGAAAAACTAGCAGAAAAGGATTGATTGTTATCAAATAAATTCCAGATAGATTGATCAGATAAGCTTACTAGTCGTTCAGGATTTTGGCACCATAACTCAAATGCACGTTCGACTGATTCAACCGAAGGTAAGCATGTATCTTCTTCAATAGAAAAAATAGCTTCAGTTCTTATTTGTCGATAAGGAAAAAAACGACCATTCACTGAACCATAAGCTGAACGGACTATACTTAAAGGAACTATTAAAGATGGCCATAATGTAGAATCAGGAACTGGATATATTTTATTTGTCCATACAACAACAATCCGTCTCAAGGATTTTACCCTCGTGCCGAATTNTTGGCCTGGAT]
[-] EMBL CD080207 [TTATTTGATTTGAGANAACAGAAGCGGATGAGATATAAAT ATGGTTCATATACNC ACATAAATGAATAAGA TAC ATCTGTTGATCNAATAATAGAATAAACATATTTCAATACTGANAAAGATC AACAAAATTAAATAATTAGATGAGCTGTAATACTACTACTATTATTAGTAGTAGTGGTATTAATAACATTAAAAATAGTACTTTTANTAAGGCACCAGCTGTTATATGAGAAATTTTCATTGGATAATAATTTGTTCGGTCAAATTGTTGCAAAAAAGATTTCAATCGACTTACATGAAATGAACAATGTTTCGGTGTAATATTACATTCACTTGATAAATGATATAGATTAGATGAATAATTGTGATTATTGTTTGTCGGTGAACGGTTACTGCCACTGCTGCTCAATACCGACTGACCATCAGATGTTTGTATAATGAACCAATAAAAGAAAATATCTTCACATGTATCTAATTCATCTATAAATGCTTTGATAGGACTTGCTAAAAGATCTGTATACAGATGTAAATAATGTTTATGGAAAAACACTGATGAAAAACTAGCAGAAAAGGATTGATTGTTATCAAATAAATTCCAGATAGATTGATCAGATAAGCTTACTAGTCGTTCAGGATTTTGGCACCATAACTCAAATGCACGTTCGACTGATTCAACCGAAGGTAAGCATGTATCTTCTTCAATAGAAAAAATAGCTTCAGTTCTTATTTGTCGATAAGGAAAAAAACGACCATTCACTGAACCATAAGCTGAACGGACTATACTTAAAGGAACTATTAAAGATGGCCATAATGTAGAATCAGGAACTGGATATATTTTATTTGTCCATACAACAACAATCCGTCTCAAGGATTTTACCCTCGTGCCGAATTNTTGGCCTGGAT]
[+] EMBL CD181345 [ AATAATTGTTCATATACACAACAT AATGAATAAGATTACAATCTGTTGATC AATAATAGAATAAACATATCTCAATACTGAAAAAGATCAAACAAAA TAAATAATTAGATGAGCTGTAATACTACTACTATTATTAGTAGTAGTGGTATTAATAACATTAAAAATAGTACTTTTTATAAGGCACCAGCTGTTATATGAGAAATTTTCATTGGATAATAATTTGTTCG ]
consensusID : consensus_10658#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 869 fasta sequence
[AGCNGAAGGTGTCAACCAAAAAGCCCAAGTTATTACCTTCAATTAGATTATCCGACCAGCCCCTTGCACGTAAACCACAATGGACTAATAGAGAGCGTGTCCTCATTATCTCGTCGAGAGGCGTTTCATACATAGGCCGGCACTTGTTGAAGGATTTATTACACATGATGCCCCATGGAAAGACAGATTCAAAACTTGATCACAAGAAAGGAATACCGGTACTAACCGAACTCGCTGAAATGAGCAACACTAACAAGGTTATTTACTTTGAGGCTCGCTAGAAAAAAGACCTATACTTGTGGCTTAGTTGTGTACCCAATGGTCCATCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGGAAACTGTTTAAAAAGCAGTCGCCCTATAGTGGCCTTCGATTCATCTTTTGAAGAATCCGATAAACCTCACATGAACTTGATCCGTGAATTGTTTATACAAACTCTTGGCACTCCAAATCATCATCCACGTTCTCAGCCATATATAGACAAGACATTTACGTTTGTTAACTTTAATGATCGTATATGGTTTAGAGTTTATCAGATTGCTGAGGAAAGTGGAGCACTAGTCGAAGTTGGTCCACGCTTTTCACTAAATCCAATACGTATATTTTCTGG-AAGCTTTTGTGGTGCAGTACTGTATTCTAATCCAAAATACATTTCTCCTAATTTAATTCGAAGTACTCTGTTGTCTAATAAACATGGCAAATACATAGAACGTACACATAATAAAACGGAAACACGGAAGCGTAAAAAAGAATTAAAAGAAATTTACCCAGTTGATGAATTAGATGAAATATTTGAATAAATTTGTTATTATATTTCAAAA]
[-] EMBL CD201374 [AGCNGAAGGTGTCAACCAAAAAGCCCAAGTTATTACCTTCAATTAGATTATCCGACCAGCCCCTTGCACGTAAACCACAATGGACTAATAGAGAGCGTGTCCTCATTATCTCGTCGAGAGGCGTTTCATACATAGGCCGGCACTTGTTGAAGGATTTATTACACATGATGCCCCATGGAAAGACAGATTCAAAACTTGATCACAAGAAAGGAATACCGGTACTAACCGAACTCGCTGAAATGAGCAACACTAACAAGGTTATTTACTTTGAGGCTCGCTAGAAAAAAGACCTATACTTGTGGCTTAGTTGTGTACCCAATGGTCCATCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGGAAACTGTTTAAAAAGCAGTCGCCCTATAGTGGCCTTCGATTCATCTTTTGAAGAATCCGATAAACCTCACATGAACTTGATCCGTGAATTGTTTATACAAACTGTTGGCATTCCAAATCATCATCCACGTTATCAGCCATATATAGACAAGACATTTACGTTTGTTAACTTTAATGATCGTATATGGTT ]
[+] EMBL CD201856 [ TCATTATCTCGTCGAGAGGCGTTTCCTACATAGGCCGGCACTTGTTGAAGGATTTATTACACATGATGCCCCATGGAAAGACAGATTCAAAACTTGATCACAAGAAAGGAATAACGGTACTAAACGAACTCGCTGGAATGAGCAACACTAACAAGGTTATTTACTTTGAGGCTCGCAAGAAAAAAGACCTATACTTGTGGCTTAGTTGTGTACCCAATGGTCCATCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGGAAACTGTTTAAAAAGCAGTCGCCCTATACTGGCCTTCGATTCATCTTTCGAAGAATCCGATAAACCTCACATGAACTTGATCCGTGAATTGTTTATACAAACTCTTGGCACTCCAAATCATCATCCACGTTCTCAGCCATATATAGACAAGACATTTACGTTTGTTAACTTTAATGATCGTATATGGTTTAGAGTTTATCAGATTGCTGAGGAAAGTGGAGCACTAGTCGAAGTTGGTCCACGCTTTTCACTAAATCCAATACGTATATTTTCTGGAAAGC TTTGTGGTGCAGTACTGTATTCTAATCC AAATACATTTCTCCTAATTT ]
[-] EMBL CD075279 [ ACATGAACTTGATCCGTGAATTGTTTATACAAACTCTTGGCACTCCAAATCATCATCCACGTTTTCAGCCATATATAGACAAGACATTTACGTTTGTTAACTTTAATGATCGTATATGGTTTAGAGTTTATCAGATTGCTGAGGAAAGTGGAGCCCTAGTCGAAGTTGGTCCACGCTTTTCCCTAAATCCAATACGTATATTTTTTGG AAGCTTTTGTGGTGCAGTACTGTATTTTAATCCAAAATACATTTTTCCTAATTTAATTCGAAGTACTCTGTTGTTTAATAAACATGGCCAATACATAGAACGTACCCATAATAAAACGGAAACCCGGAAGCGTAAAAAAAAATTAAAAGAAATTTACCCCGTTGATGAATTAGATGAAATATTTGAATAAATTTGTTAT ]
[-] EMBL AI395262 [ cgTGGCACTCCAAATCATCATCCACGTTCTCAGCCATATATAGACAAGACATTTACGTTTGTTAACTTTAATGATCGTATATGGTTTAGAGTTTATCAGATTGCTGAGGAAAGTGGAGCACTAGTCGAAGTTGGTCCACGCTTTTCACTAAATCCAATACGTATATTTTCTGG AAGCTTTTGTGGTGCAGTACTGTATTCTAATCCAAAATACATTTCTCCTAATTTAATTCGAAGTACTCTGTTGTCTAATAAACATGGCAAATACATAGAACGTACACATAATAAAACGGAAACACGGAAGCGTAAAAAAGAATTAAAAGAAATTTACCCAGTTGATGAATTAGATGAAATATTTGAATAAATTTGTTATTATATTTCAAAA]
[+] EMBL SMAA25596 [ GTACTGTATTCTAATCCAAAATACATTTCTCCTAATTTAATTCGAAGTACTCTGTTGTCTAATAAACATGGCAAATACATAGAACGTACACATAATAAAACGGAAACACGGAAGCGTAAAAAAGAATTAAAAGAAATTTACCCAGTTGATGAATTAGATGAAATATTTGAATAAATTTGTTA ]
[-] EMBL CD157586 [ CATTTCTCCTAATTTAATTCGAAGTACTCTGTTGTCTAATAAACATGGCAAATACATAGAACGTACACATAATAAAACGGAA ]
consensusID : consensus_10658#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[TGAAATGATTATGAGCTCGNATAAGAGCGGTAAATCCAGTACGTGGAAAAGCTTTAGCTGGGTANAACAATACTGGAGATATAGGTAATCCAACCTCAGAATAATTAGGATAATTCCATTCAGCATAAGACCGTGAATATTGAGGAAATACACGATCATTTAATATATCCAAAGTGGTCAATATAATTTTCTCTATTGATGAAAAATAACGTTGATAAATAAACATTATCTGTTTTCGAAGAAGAGATTTTTCTTTTGATGAATATGTTGATAAGATAGATGGAATCTTTTGAAATTTAACTTGTGGAATACGAATAGCAATTTTATACCAATCAAGAACTTCTGAGAAAGGTAAAACAATATCATCATTGACAATCACCGGGATACAACCACAAGCTAGACTGTCATACAAATTAAAACGATTTAAATTGTCCGCATCAATGATCAAACAAAATTCACTAGAACACAATGATTCCGAATAGTCTATCCATTTTTTTACACCTTGACGATATGGTGATTCAGATACTAGCACAAAACGTTGATTATAGGTTGTATTAGATTGGTTTGATGAAGAGTCTAGGACAAGTATAGTTCGCATTAAATTTGGATTTGATG]
[-] EMBL AI977340 [TGAAATGATTATGAGCTCGNATAAGAGCGGTAAATCCAGTACGTGGAAAAGCTTTAGCTGGGTANAACAATACTGGAGATATAGGTAATCCAACCTCAGAATAATTAGGATAATTCCATTCAGCATAAGACCGTGAATATTGAGGAAATACACGATCATTTAATATATCCAAAGTGGTCAATATAATTTTCTCTATTGATGAAAAATAACGTTGATAAATAAACATTATCTGTTTTCGAAGAAGAGATTTTTCTTTTGATGAATATGTTGATAAGATAGATGGAATCTTTTGAAATTTAACTTGTGGAATACGAATAGCAATTTTATACCAATCAAGAACTTCTGAGAAAGGTAAAACAATATCATCATTGACAATCACCGGGATACAACCACAAGCTAGACTGTCATACAAATTAAAACGATTTAAATTGTCCGCATCAATGATCAAACAAAATTCACTAGAACACAATGATTCCGAATAGTCTATCCATTTTTTTACACCTTGACGATATGGTGATTCAGATACTAGCACAAAACGTTGATTATAGGTTGTATTAGATTGGTTTGATGAAGAGTCTAGGACAAGTATAGTTCGCATTAAATTTGGATTTGATG]
consensusID : consensus_10658#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence
[GAGTACTTCGAATTAAATTAGGAGAAATGTATTTTGGATTAGAATACAGTACTTATACAGATGTAAATAATGTTTATGGAAAAACACTGATGAAAAACTAGCAGAAAAGGATTGATTGTTATCAAATAAATTCCAGATAGATTGATCAGATAAGCTTACTAGTCGTTCAGGATTTTGGCACCATAACTCAAATGCACGTTCGACTGATTCAACCGAAGGTAAGCATGTATCTTCTTCAATAGAAAAAATAGCTTCAGTTCTTATTTGTCGATAAGGAAAAAAACGACCATTCACTGAACCATAAGC]
[-] EMBL SMAA25638 [GAGTACTTCGAATTAAATTAGGAGAAATGTATTTTGGATTAGAATACAGTACTTATACAGATGTAAATAATGTTTATGGAAAAACACTGATGAAAAACTAGCAGAAAAGGATTGATTGTTATCAAATAAATTCCAGATAGATTGATCAGATAAGCTTACTAGTCGTTCAGGATTTTGGCACCATAACTCAAATGCACGTTCGACTGATTCAACCGAAGGTAAGCATGTATCTTCTTCAATAGAAAAAATAGCTTCAGTTCTTATTTGTCGATAAGGAAAAAAACGACCATTCACTGAACCATAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10658#2 TTATTTGATTTGAGANAACAGAAGCGGATGAGATATAAATATGGTTCATATACNCACATA 60
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 ------------------------------------------------------------
consensus_10658#4 ------------------------------------------------------------
consensus_10658#1 ------------------------------------------------------------
consensus_10658#3 ------------------------------------------------------------
consensus_10658#2 AATGAATAAGATACATCTGTTGATCNAATAATAGAATAAACATATTTCAATACTGANAAA 120
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 ------------------------------------------------------------
consensus_10658#4 ------------------------------------------------------------
consensus_10658#1 -----------------------------------------ANAATTCGGCACGAGGGCA 19
consensus_10658#3 ------------------------------------------------------------
consensus_10658#2 GATCAACAAAATTAAATAATTAGATGAGCTGTAATACTACTACTATTATTAGTAGTAGTG 180
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 ------------------------------------------------------------
consensus_10658#4 ------------------------------------------------------------
consensus_10658#1 GAAGTCTGTAAAGAAATTTCATGGGTCTCAAAAGTAAAGCTAAATGAGGGCTCCAAGCCG 79
consensus_10658#3 -------------------------------------------------------AGCNG 5
consensus_10658#2 GTATTAATAACATTAAAAATAGTACTTTTANTAAGGCACCAGCTGTTATATGAGAAATTT 240
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 ------------------------------------------------------------
consensus_10658#4 ------------------------------------------------------------
consensus_10658#1 AAGGTGTCAACCAAAAAGCGTAAATTCTTCTTCATTTCCATAATTTCTTTAGCCAAGTTA 139
consensus_10658#3 AAGGTGTCAACCAAAAAGC---------------------------------CCAAGTTA 32
consensus_10658#2 TCATTGGATAATAATTTGTTCGGTCAAATTGTTGCAAAAAAGATTTCAATCGACTTACAT 300
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 ------------------------------------------------------------
consensus_10658#4 --------------------------------------TGAAATGATTATGAGCTCGNAT 22
consensus_10658#1 TTACCTTCAATTAGATTATCCGACCAGCCCCCTGCACGT-AAACCACAATGGACAAATAG 198
consensus_10658#3 TTACCTTCAATTAGATTATCCGACCAGCCCCTTGCACGT-AAACCACAATGGACTAATAG 91
consensus_10658#2 GAAATGAACAATG-TTTCGGTGTAATATTACATTCACTTGATAAATGATATAGATTAGAT 359
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 ------------------------------------------------------------
consensus_10658#4 AAGAGCGGTAAAT-CCAGTACGTGGAAAAGCTTTAGCTGGGTANA------ACAATACTG 75
consensus_10658#1 AGAGCGTGTCCTCATTATCTCGTCGAGAGGCGTTTCCTACATAGGC--CGGCACTTGTTG 256
consensus_10658#3 AGAGCGTGTCCTCATTATCTCGTCGAGAGGCGTTTCATACATAGGC--CGGCACTTGTTG 149
consensus_10658#2 GAATAATTGTGATTATTGTTTGTCGGTGAACGGTTACTGCCACTGCTGCTCAATACCGAC 419
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 ------------------------------------------------GCTCCTACCGAC 12
consensus_10658#4 GAGATATAGGTAATCCAACCTCAGAATAATTAGGATAATTCCATTCAGCATAAGACCG-- 133
consensus_10658#1 AAGGATTTATTACACATGATGCCCCATGGAAAGACAGATTCAAAACTTGATCACAAGAAA 316
consensus_10658#3 AAGGATTTATTACACATGATGCCCCATGGAAAGACAGATTCAAAACTTGATCACAAGAAA 209
consensus_10658#2 TGACCATCAGATGTTTGTATAATGAACCAATAAAAGAAAATATCTTCACATGTATCTAAT 479
consensus_10658#5 -----------------------------------------------GAGTACTTCGAAT 13
consensus_10658#0 TGACCATCACATGTTTGTGTAATGAACCAATAAAAGAAAATATCTTCACATGTATCTAAT 72
consensus_10658#4 TGAATATTGAGGAAATACACGATCATTTAATATATCCAAAGTGGTCAATATA-ATTTTCT 192
consensus_10658#1 GGAATAACG-GTACTAAACGAACTCGCTGAAATGAGCAACACTAACAAGGT-TATTTACT 374
consensus_10658#3 GGAATACCG-GTACTAACCGAACTCGCTGAAATGAGCAACACTAACAAGGT-TATTTACT 267
* * *
consensus_10658#2 TCATCTATAAATGCTTTGATAGGACTTGCTAAAAGATCTGTATACAGATGTAAATAATGT 539
consensus_10658#5 TAAATTAGGAGAAATGTATTTTGGATTAGAATACAGTACTTATACAGATGTAAATAATGT 73
consensus_10658#0 TCATCTATAAATGCTTTGATAGGACTTGCTAAAAGATCTGTATACAGATGTAAATAATGT 132
consensus_10658#4 CTATTGATGAAAAATAACGTTGATAAATAAACATTATCTGTTTTCGAAGAAGAGATTTTT 252
consensus_10658#1 TTGAGGCTCGCAAG-AAAAAAGACCTATACTTGTGGCTTAGTTGTGTACCCAATGGTCCA 433
consensus_10658#3 TTGAGGCTCGCTAG-AAAAAAGACCTATACTTGTGGCTTAGTTGTGTACCCAATGGTCCA 326
* * *
consensus_10658#2 TTATGGAAAAACACTGATGAAAAACTA---GCAGAAAAGGATTGATTGTTATCAAATAAA 596
consensus_10658#5 TTATGGAAAAACACTGATGAAAAACTA---GCAGAAAAGGATTGATTGTTATCAAATAAA 130
consensus_10658#0 TTATGGAAAAACACTGATGAAAAACTA---GCAGAAAAGGATTGATTGTTATCAAATAAA 189
consensus_10658#4 CTTTTGATGAATA-TGTTGATAAGATA---GATGGAATCTTTTGAAATTTAACTTGTGGA 308
consensus_10658#1 TCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGG-AAA 492
consensus_10658#3 TCAGTTAAATTTCTTGTTGAAAATATACGTACTACAGCAGAATTAAAGTTAACAGG-AAA 385
* ** *** ** ** * * * *** * *
consensus_10658#2 TTCCAGATAGATTGATCAGATAAGCTTACTAGTCGTTCAGGATTTTGGCACCATAACTCA 656
consensus_10658#5 TTCCAGATAGATTGATCAGATAAGCTTACTAGTCGTTCAGGATTTTGGCACCATAACTCA 190
consensus_10658#0 TTCCAGATAGATTGATCAGATAAGCTTACTAGTCGTTCAGGATTTTGGCACCATAACTCA 249
consensus_10658#4 ATACGAATAGCAATTTTATACCAA-TCAAGAACTTCTGAGAAAGGTAAAACAATATCATC 367
consensus_10658#1 CTGTTTAAAAAGCAGTCGCCCTATACTGGCCTTCGATTCATCTTTCGAAGAATCCGATAA 552
consensus_10658#3 CTGTTTAAAAAGCAGTCGCCCTATAGTGGCCTTCGATTCATCTTTTGAAGAATCCGATAA 445
* * * * * *
consensus_10658#2 AATGCACGTTCGACTG-ATTCAACCGAAGGTAAGCATGTATCTTCTTCAATAGAAAAAAT 715
consensus_10658#5 AATGCACGTTCGACTG-ATTCAACCGAAGGTAAGCATGTATCTTCTTCAATAGAAAAAAT 249
consensus_10658#0 AATGCACGTTCGACTG-ATTCAACCGAAGGTAAGCATGTATCTTCTTCAATAGAAAAAAT 308
consensus_10658#4 ATTG-ACAATCACCGGGATACAACCACAAGCTAGACTGT-------CATACAAATTAAAA 419
consensus_10658#1 ACCTCACATGAACTTG--ATCCGTGAATTGTTTATACAAACTCTTGGCACTCCAAATCAT 610
consensus_10658#3 ACCTCACATGAACTTG--ATCCGTGAATTGTTTATACAAACTCTTGGCACTCCAAATCAT 503
* ** * * * * *
consensus_10658#2 AGCTTCAGTTCTTATTTGTCGATAAGGAAAAAAACGACCATTCACTGAACCATAAG---- 771
consensus_10658#5 AGCTTCAGTTCTTATTTGTCGATAAGGAAAAAAACGACCATTCACTGAACCATAAG---- 305
consensus_10658#0 AGCTTCAGTTCTTATTTGTCGATAAGGAAAAAAACGACCATTCACTGAACCATAAG---- 364
consensus_10658#4 CGATTTAAATTGTCCGCATCAATGATCAAACAAA-----ATTCACTAGAACACAATGATT 474
consensus_10658#1 CATCCACGTTCTCAGCCATATATAGACAAGACATTTAC-GTTTGTT-AACTNTAATGATC 668
consensus_10658#3 CATCCACGTTCTCAGCCATATATAGACAAGACATTTAC-GTTTGTT-AACTTTAATGATC 561
* * ** ** * ** * * **
consensus_10658#2 CTGAACGGACTATACTTAAAGGAACTATTAAAGATGGCCATAATGTAGAATCAGGAACTG 831
consensus_10658#5 C----------------------------------------------------------- 306
consensus_10658#0 CTGAACGGACTATACTTAAAGGAACTATTAAAGATGGCCATAATGTAGAATCAGGAACTG 424
consensus_10658#4 CCGAATAGTCTATCCATTTTTTTACACCTTGACGATATGGTGATTCAGATACTAGCACAA 534
consensus_10658#1 GTATATGGTTTAGAGTTTATCAGATTGCTGAGGAAAGTG-AGCACTAGTCGAAAGTGGTC 727
consensus_10658#3 GTATATGGTTTAGAGTTTATCAGATTGCTGAGGAAAGTGGAGCACTAGTCGAAGTTGGTC 621
consensus_10658#2 GATATATTTTATTTGTCCATACAACAACAATCCGTCTCAAGGATTTTACCCTCGTGCCGA 891
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 GATATATTTTATTTGTCCATACAACAACAATCCGTCTCAAGGATTTTACAGATTGAATTG 484
consensus_10658#4 AACGTTGATTATAGGTTGTATTAGATTGGTTTGATGAAGAGTCTAGGACAAGTATAGTTC 594
consensus_10658#1 -ACGCTTT-CACTAATNC--ATACGTATATTTCT--GGAGCTNNTGTG-TGCA-TACTGT 779
consensus_10658#3 CACGCTTTTCACTAAATCCAATACGTATATTTTCTGGAAGCTTTTGTGGTGCAGTACTGT 681
consensus_10658#2 ATTNTTGGCCTGGAT--------------------------------------------- 906
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 ATTTTAACAACATACAAAGTAGTGTGAAATGATTATGAGCTCGAATGAGAGCGGTAAATC 544
consensus_10658#4 GCATTAAATTTGGATTTGATG--------------------------------------- 615
consensus_10658#1 AT-CTAATC---AATACATTCT--CTAATTAA--TCGA--TACTCTGGTGCT-------- 821
consensus_10658#3 ATTCTAATCCAAAATACATTTCTCCTAATTTAATTCGAAGTACTCTGTTGTCTAATAAAC 741
consensus_10658#2 ------------------------------------------------------------
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 CAGTACGTGGAAAAGCTNTAGCTGGGTAAAACAATACTGGAGATATAGGTAATCCAACCT 604
consensus_10658#4 ------------------------------------------------------------
consensus_10658#1 ATAACTGCNNNATCTGACGT---CACTATAAA-CGGAACC---GGAGCGTAAAAGA---T 871
consensus_10658#3 ATGGCAAATACATAGAACGTACACATAATAAAACGGAAACACGGAAGCGTAAAAAAGAAT 801
consensus_10658#2 ------------------------------------------------------------
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 CAGAATAATTAGGATAATTCCATTCAGCATAAGACCGTGAATATTGAGGAAATACACGAT 664
consensus_10658#4 ------------------------------------------------------------
consensus_10658#1 TAAAGAATNACCAGTGTGATNNAGAAATTGATAATN------------------------ 907
consensus_10658#3 TAAAAGAAATTTACCCAGTTGATGAATTAGATGAAATATTTGAATAAATTTGTTATTATA 861
consensus_10658#2 ------------------------------------------------------------
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 CATTTAATATATCCAAAGTGGTCAATATAATTTTCTCTATTGATGAAAAATAACGTTGAT 724
consensus_10658#4 ------------------------------------------------------------
consensus_10658#1 ------------------------------------------------------------
consensus_10658#3 TTTCAAAA---------------------------------------------------- 869
consensus_10658#2 ------------------------------------------------------------
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 AAATAAACATTATCTGTTTTCGAAGAAGAGATTTTTCTTTTGATGAATATGTTGATAAGA 784
consensus_10658#4 ------------------------------------------------------------
consensus_10658#1 ------------------------------------------------------------
consensus_10658#3 ------------------------------------------------------------
consensus_10658#2 ------------------------------------------------------------
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 TAGATGGAATCTTTTGAAATTTAACTTGTGGAATACGAATAGCAATTCAGTTTACTTTAT 844
consensus_10658#4 ------------------------------------------------------------
consensus_10658#1 ------------------------------------------------------------
consensus_10658#3 ------------------------------------------------------------
consensus_10658#2 ------------------------------------------------------------
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 TATGAGCAACATTAATCTAATCAGTATGAATCAATTTGTTTCAAACACTGTCACCGACAC 904
consensus_10658#4 ------------------------------------------------------------
consensus_10658#1 ------------------------------------------------------------
consensus_10658#3 ------------------------------------------------------------
consensus_10658#2 ------------------------------------------------------------
consensus_10658#5 ------------------------------------------------------------
consensus_10658#0 TGAAAATGTGTTTCAAGCTATCTTGTTACTAGTAGCGTTTTCATCGCCTGAGGCTTTAGA 964
consensus_10658#4 ------------------------------------------------------------
consensus_10658#1 ------------------------------------------------------------
consensus_10658#3 ------------------------------------------------------------
consensus_10658#2 -----------------------------------------------------------
consensus_10658#5 -----------------------------------------------------------
consensus_10658#0 AAAACACTGCCAGAAGATTTAAAAGAGCAACTGGCTGGCAATTAGAGGTGTAAAATCCT 1023
consensus_10658#4 -----------------------------------------------------------
consensus_10658#1 -----------------------------------------------------------
consensus_10658#3 -----------------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||