cluster # 107

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 107 cluster # 107 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_107#0 length = 446 sequences # 1

consensus_107#1 length = 443 sequences # 1

consensusID : consensus_107#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [TACCAGACGACTTCGACATTTCGAGTTTTTTCTACTGAAATGCCGCGGTATAGTGCCACTGATGAGATCATGGGACTTCGTATACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATCAGATTCTGTTGTTTAGGAAATGTTTGTAAGTGAGCTTGTCTCCACTGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCAGTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTGGATAGAGAAATATAAATCCGAATTTGATGCATCTTGTCCATAAAACTGCTTACTATCCAGTTGATTTTTCGTGTTAAATCATTTATCAATGTGAATACGTACTAACCTGTAACTNTTAAACCCAATCTATTCACTACA]

[+] EMBL CD137247             [TACCAGACGACTTCGACATTTCGAGTTTTTTCTACTGAAATGCCGCGGTATAGTGCCACTGATGAGATCATGGGACTTCGTATACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATCAGATTCTGTTGTTTAGGAAATGTTTGTAAGTGAGCTTGTCTCCACTGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCAGTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTGGATAGAGAAATATAAATCCGAATTTGATGCATCTTGTCCATAAAACTGCTTACTATCCAGTTGATTTTTCGTGTTAAATCATTTATCAATGTGAATACGTACTAACCTGTAACTNTTAAACCCAATCTATTCACTACA]




>consensus_107#0
TACCAGACGACTTCGACATTTCGAGTTTTTTCTACTGAAATGCCGCGGTATAGTGCCACT
GATGAGATCATGGGACTTCGTATACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCA
CCTGACGTGGACTGTGTTTCATCAGATTCTGTTGTTTAGGAAATGTTTGTAAGTGAGCTT
GTCTCCACTGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTT
CAATGTCAGTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCT
CGAGAGTGGATAGAGAAATATAAATCCGAATTTGATGCATCTTGTCCATAAAACTGCTTA
CTATCCAGTTGATTTTTCGTGTTAAATCATTTATCAATGTGAATACGTACTAACCTGTAA
CTNTTAAACCCAATCTATTCACTACA

consensusID : consensus_107#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [TTTATTCTTCTTTTCTACAGATTAGGATTTTCGAACACAAAGTGACCTGCTGTATTCGGCGATTGGATATCTAACTACAAAATCGTCTTATATATAGTACCAGACGACTTCGACATTTCGAGTTTTCTCTACTGAAATGCCGCGGTATAGTACCACTGATGAGATCATGGGACTTCGTATACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATCAGATTCTGTTGTATGTCTATCTAAAGCTACTGAAATGTTTGTAAGTGAGCTTGTCTCCACTGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCGGTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTGGATAGAGAAATATAAATCCGAAT]

[-] EMBL CD145866             [TTTATTCTTCTTTTCTACAGATTAGGATTTTCGAACACAAAGTGACCTGCTGTATTCGGCGATTGGATATCTAACTACAAAATCGTCTTATATATAGTACCAGACGACTTCGACATTTCGAGTTTTCTCTACTGAAATGCCGCGGTATAGTACCACTGATGAGATCATGGGACTTCGTATACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATCAGATTCTGTTGTATGTCTATCTAAAGCTACTGAAATGTTTGTAAGTGAGCTTGTCTCCACTGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCGGTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTGGATAGAGAAATATAAATCCGAAT]




>consensus_107#1
TTTATTCTTCTTTTCTACAGATTAGGATTTTCGAACACAAAGTGACCTGCTGTATTCGGC
GATTGGATATCTAACTACAAAATCGTCTTATATATAGTACCAGACGACTTCGACATTTCG
AGTTTTCTCTACTGAAATGCCGCGGTATAGTACCACTGATGAGATCATGGGACTTCGTAT
ACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATC
AGATTCTGTTGTATGTCTATCTAAAGCTACTGAAATGTTTGTAAGTGAGCTTGTCTCCAC
TGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCG
GTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTG
GATAGAGAAATATAAATCCGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_107#0      ------------------------------------------------------------
consensus_107#1      TTTATTCTTCTTTTCTACAGATTAGGATTTTCGAACACAAAGTGACCTGCTGTATTCGGC 60
                                                                                 

consensus_107#0      -------------------------------------TACCAGACGACTTCGACATTTCG 23
consensus_107#1      GATTGGATATCTAACTACAAAATCGTCTTATATATAGTACCAGACGACTTCGACATTTCG 120
                                                          ***********************

consensus_107#0      AGTTTTTTCTACTGAAATGCCGCGGTATAGTGCCACTGATGAGATCATGGGACTTCGTAT 83
consensus_107#1      AGTTTTCTCTACTGAAATGCCGCGGTATAGTACCACTGATGAGATCATGGGACTTCGTAT 180
                     ****** ************************ ****************************

consensus_107#0      ACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATC 143
consensus_107#1      ACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATC 240
                     ************************************************************

consensus_107#0      AGATTCTGTTGTTTAG---------------GAAATGTTTGTAAGTGAGCTTGTCTCCAC 188
consensus_107#1      AGATTCTGTTGTATGTCTATCTAAAGCTACTGAAATGTTTGTAAGTGAGCTTGTCTCCAC 300
                     ************ *                 *****************************

consensus_107#0      TGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCA 248
consensus_107#1      TGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCG 360
                     *********************************************************** 

consensus_107#0      GTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTG 308
consensus_107#1      GTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTG 420
                     ************************************************************

consensus_107#0      GATAGAGAAATATAAATCCGAATTTGATGCATCTTGTCCATAAAACTGCTTACTATCCAG 368
consensus_107#1      GATAGAGAAATATAAATCCGAAT------------------------------------- 443
                     ***********************                                     

consensus_107#0      TTGATTTTTCGTGTTAAATCATTTATCAATGTGAATACGTACTAACCTGTAACTNTTAAA 428
consensus_107#1      ------------------------------------------------------------
                                                                                 

consensus_107#0      CCCAATCTATTCACTACA 446
consensus_107#1      ------------------