These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2031 fasta sequence [AGTTTACTGA-GGTTCTACACCTTTACT-AT-TGCTGCTGATGGTGGTCATCTGACTGTTTTGTCACTGCTGTTAAATGCGGGAGCGTTAGTCAACACTATTAATTGCCATGGTGAATGTGCTCTTACCCGTGCTACCCGTCGTGGATGGGTTCACTGTGCACGATTTCTCTTAAGCCATGGAGCTAATCCGAATCCGATGCCATCTGATGGACATACTTTTGTGGTATCGCCATTACATTTAGCTCGCCAAATGCATCAAACAGTTATAGAACAAGATATTTTAAAAAGAACAGTTGAGATTGATAAAGCTGTTGCTGAAATAGTATCAACGACTCTACCAAATCATCTGACTTTGATAGAACCAGGACATTTACCAGAGACAATGTCTTTAAGTTTGTTTCCTGTTCAAATCTTCTCTTCAGAAGAGCTTAGTCGCTTTGTTTTGTACTTTAAAACACCTCCTGGGTATGGCTCACGCAGTTTACAAACGGGAAATAAAGAATCTTCCAGTGGATCGACACCGTCTGACGAGCTGATATTTGTATATGTGATTCGAGCGCAGTTATCCGACAATCATGTTTCTTGC-TGGCTCACTGGACCTCCCATGGAATCACTATCATTGAGCTTTAATGGGACAAAAAAACACTGTACCGTGATACCCTTGTCACCTGAGTATTCTGGTATCTGCGTATATTCAGTATCTACAGTAATTAGGAGTGGTGGACTCAATACTCTCTGCCTAGAGCTACGTACCCAAGACCAATCAATTGGTGAAACAACTCAGGGTGCATCATATGATTCAGTTGTTCTTGTTGGAGCTTATCGTATTCGTCTGGATGTAACCTCTTTGATAATGGCCTCAGTGAATCCAGTGTCCTCAACAGGAACCACTAAAGCAAGCGTTTACATCCCCAGATCAGCCATATAATATTAGTAGCTATGAAAAATATGGATGTTTTCAACCACTGTATTCTGTTTCATCCTATTAAACATAGAGGATTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATTCAGAAAGAAAATACTGTACTGAAAGGTGGTTATAGTTTCTAGATCATGAGATCATTATTTGTGATGTGTTCCAGTAGGTTCTCGAGAAGAAGAGGCTTGTTGTTGTGGATTTGTCTTGTTCTGACGTTGTCGAACACACATAACCAGCTGTTCAGCTGTTACAGGATACATGATACTTTCGATAATGGCGACTCCTGACTTGTGATAGTTCGGCTCTGTCTTGTCAGTGCGCACACGTAAAACTTTCCAACCGACACCAGGAACGCATACACATTCTACAATTTTTCCGTCTAAAACTTTATCACGTGAACTAACATGTGCCAGCTTGGCAGATGGCACCGTAAGACCACCAAGAAAGAGAAGTCCAACGTAACCCGGAATTTCACCAACTTTTCGTTGATATTCCACTTTACATCTAGTCAATTGTGTTCATACTTGGAGGTTTCCATTTTAACGTTTGTGGGCAGGTTCCAAGAACATAAAAATCTTCAGGACCACAAGGCTGAAATACAAGGCCATCTGTTGAGTGGTCCAAACTTTGCAAGAACGCAGGTTTGAGTAGCTCTTCAGTATCTTGCAGTGCGCGAAATGCTTTTCGCCTGACCGAAAAAGATTGAGTACTAAAGTCAACTAGTCCCAAGTGACCACCGGTATTCCTGGGCCATATAACTTGTTTGTCAATTGTAGAATAACGTTCAAAAAATGCAGACCGACCAATGGGTTTATTGTTTAAAGTAATTATATCATAGATTAAGAATCTAGGTGTTCCAGATACTTCTGATGTAGATATGTTAGGCGGTTTGGAATGGTCATGACAAAGTACAAGTTCACCATCCAAAAGCGTATTAAATAAGTGACCATCAGGATCATTTAGGAAGTCTGGACGACCAGAATGATCCCATAT] [+] EMBL CD069929 [AGTTTACTGA GGTTCTACACCTTTACTCAT TGCTGCTGATGGTGGTCATCTGACTGTTTTGTCACTGCTGTTAAATGCGGGAGCGTTAGTCAACACTATTAATTGCCATGGTGAATGTGCTCTTACCCGTGCTACCCGTCGTGGATGGGTTCACTGTGCACGATTTCTCTTAAGCCATGGAGCTAATCCGAATCCGATGCCATCTGATGGACATACTTTTGTGGTATCGCCATTACATTTAGCTCGCCAAATGCATCAAACAGTTATAGAACAAGATATTTTAAAAAGAACAGTTGAGATTGATAAAGCTGTTGCTGAAATAGTATCAACGACTCTACCAAATCATCTGACTTTGATAGAACCAGGACATTTACCAGAGACAATGTCTTTAAGTTTGTTTCCTGTTCAAATCTTCTCTTCAGAAGAGCTTAGTCGCTTTGTTTTGTACTTTAAAAC ] [+] EMBL CD080386 [ ACTGATGGTTCTACACCTTTAAT ATATGCTGCTGATGGTGGTCATCTGACTGTTTTGTCACTGCTGTTAAATGCGGGAGCGTTAGTCAACACTATTAATTGCCATGGTGAATGTGCTCTTACCCGTGCTACCCGTCGTGGATGGGTTCACTGTGCACGATTTCTCTTAAGCCATGGAGCTAATCCGAATCCGATGCCATCTGATGGACATACTTTTGTGGTATCGCCATTACATTTAGCTCGCCAAATGCATCAAACAGTTATAGAACAAGATATTTTAAAAAGAACAGTTGAGATTGATAAAGCTGTTGCTGAAATAGTATCAACGACTCTACCAAATCATCTGACTTTGATAGAACCAGGACATTTACCAGAGACAATGTCTTTAAGTTTGTTTCCTGTTCAAATCTTCTCTTCAGAAGAGCTTAGTCGCTTTGTTTTGTACTTTAAAACACCTCCTGGGTATGGCTCACGCAGTTTACAAACGGGAAATAAAGAATCTTCCAGTGGATCGACACCGTCTGACGAGCTGATATTTGTATATGTGATTCGAGCGCAGTTATCCGACAATCATGTTTCTTGC TGGCTCACTGGACCTCCCATGGAATCACTATCATTGAGCTNTAATGGGAC ANAAAACACTGTACCGTGATACCCTTGTCACCTGAGTATTCTGGTATCTGCGTATATTCAGTATCTACA ] [+] EMBL BG931868 [ GTCATCTGACTGTTTTGTCACTGCTGTTAAATGCGGGAGCGTTAGTCAGCACTATTAATTGCCATGGTGAATGTGCTCTTACCCGTGCTACCCGTCGTGGATGGGTTCACTGTGCACGATTTCTCTTAAGCCATGGAGCTAATCCGAATCCGATGCCATCTGATGGACATA ] [-] EMBL CD127702 [ TTGTCACTGCTGTTAAATGCGGGAGCGTTAGTCAACACTATTAATTGCCATGGTGAATGTGCTCTTACCCGTGCTACCCGTCGTGGATGGGTTCACTGTGCACGATTTCTCTTAAGCCATGGAGCTAATCCGAATCCGATGCCATCTGATGGACATACTTTTGTGGTATCGCCATTACATTTAGCTCGCCAAATGCATCAAACAGTTATAGGACAAGATATTTTAAAAAGAACAGTTGAGATTGATAAAGCTGTTGCTGAAATAGTATCAATGACTCTACCAAATCATCTGACTTTGATAGAACCAGGACATTTACCAGAGACAATGTCTTTAAGTTTGTTTCCTGTTCAAATCTTCTCGTCAGAAGAGCTTAGTCGCTTTGTTTAATACTTTAAAACACCTacc ] [+] EMBL CD083519 [ GCTCTTACCCGTGCTACCCGTCGTGGATGGGTTCACTGTGCACGATTTCTCTTAAGCCATGGAGCTAATCCGAATCCGATGCCATCTGATGGACATACTTTTGTGGTATCGCCATTACATTTAGCTCGCCAAATGCATCAAACAGTTATAGAACAAGATATTTTAAAAAGAACAGTTGAGATTGATAAAGCTGTTGCTGAAATAGTATCAACGACTCTACCAAATCATCTGACTTTGATAGAACCAGGACATTTACCAGAGACAATGTCTTTAAGTTTGTTTCCTGTTCAAATCTTCTCTTCAGAAGAGCTTAGTCGCTTTGTTTTGTACTTTAAAACACCTCCTGGGTATGGCTCACGCAGTTTACAAACGGGAAATAAAGAATCTTCCAGTGGATCGACACCGTCTGACGAGCTGATATTTGTATATGTGATTCGAGCGCAGTTATCCGACCATCATGTTTCTTGCTTGGCTC ] [-] EMBL CD074481 [ TCGACACCGTCTGACGAGCTGATATTTGTATATGT ATTCGAGCGCAGTTATCCGACAATCATGTTTCTTGC TGGCTCACTGGACCTCCCATGGAATCACTATCATTGAGCTTTAATGGGACAAAAAAACACTGTACCGTGATACCCTTGTCACCTGAGTATTCTGGTATCTGCGTATATTCAGTATCTACAGTAATTAGGAGTGGTGGACTCAATACTCTCTGCCTAGAGCTACGTACCCAAGACCAATCAATTGGTGAAACAACTCAGGGTGCATCATATGATTCAGTTGTTCTTGTTGGAGCTTATCGTATTCGTCTGGATGTAACCTCTTTGATAATGGCCTCAGTGAATCCAGTGTCCTCAACAGGAACCACTAAAGCAAGCGTTTACATCCCCAGATCAGCCATATAATATTAGTAGCTATGAAAAATATGGATGTTTTCAACCACTGTATTCTGTTTCATCCTATTAAACATAGAGGATTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATTCAGAAAGAAAATACTGTACTGAA ] [-] EMBL CD074301 [ GACGAGCTGATATTTGTATATGTGATTCGAGCGCAGTTATCCGACAATCATGTTTCTTGC TGGCTCACTGGACCTCCCATGGAATCACTATCATTGAGCTTTAATGGGACAAAAAAACACTGTACCGTGATACCCTTGTCACCTGAGTATTCTGGTATCTGCGTATATTCAGTATCTACAGTAATTAGGAGTGGTGGACTCAATACTCTCTGCCTAGAGCTACGTACCCAAGACCAATCAATTGGTGAAACAACTCAGGGTGCATCATATGATTCAGTTGTTCTTGTTGGAGCTTATCGTATTCGTCTGGATGTAACCTCTTTGATAATGGCCTCAGTGAATCCAGTGTCCTCAACAGGAACCACTAAAGCAAGCGTTTACATCCCCAGATCAGCCATATAATATTAGTAGCTATGAAAAATATGGATGTTTTCAACCACTGTATTCTGTTTCATCCTATTAAACATAGAGGATTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATTCAGAAAGAAAATACTGTACTGAA ] [+] EMBL CD187008 [ TGGAATCACTATCATTGAGCTTTAATGGGACAAAAAAACACTGTACCGTGATACCCTTGTCACCTGAGTATTCTGGTATCTGCGTATATTCAGTATCTACAGTAATTAGGAGTGGTGGACTCAATACTCTCTGCCTAGAGCTACGTACCCAAGACCAATCAATTGGTGAAACAACTCAGGGTGCATCATATGATTCAGTTGTTCTTGTTGGAGCTTATCGTATTCGTCTGGATGTAACCTCTTTGATAATGGCC ] [-] EMBL AW017059 [ TATTCAGTATCTACAGTAATTAGGAGTGGTGGACTCAATACTCTCTGCCTAGAGCTACGTACCCAAGACCAATCAATTGGTGAAACAACTCAGGGTGCATCATATGATTCAGTTGTTCTTGTTGGAGCTTATCGTATTCGTCTGGATGTAACCTCTTTGATAATGGCCTCAGTGAATCCAGTGTCCTCAACAGGAACCACTAAAGCAAGCGTTTACATCCCCAGATCAGCCATATAATATTAGTAGCTATGAAAAATATGGATGTTTTCAACCACTGTATTCTGTTTCATCCTATTAAACATAGAGGATTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATTCAGAAAGAAAATACTGTACTGAA ] [+] EMBL CD073297 [ AACCACTGTATTCTGTTTCATCCTATTAAACATAGAGGATTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATTCAGAAAGAAAATACTGTAAAGTTAGGTGGTTATAGTTTCTAGATCATGAGATCATTATTTGTGATGTGTTCCAGTAGGTTCTCGAGAAGAAGAGGCTTGTTGTTGTGGATTTGTCTTGTTCTGACGTTGTCGAACACACATAACCAGCTGTTCAGCTGTTACAGGATACATGATACTTTCGATAATGGCGACTCCTGACTTGTGATAGTTCGGCTCTGTCTTGTCAGTGCGCACACGTAAAACTTTCCAACCGACACCAGGAACGCATACACATTCTACAATTTTTCCGTCTAAAACTTTATCACGTGAACTAACATGTGCCAGCTTGGCAGATGGCACCGTAAGACCACCAAGAAAGAGAAGTCCAACGTAACCCGGAATTTCACCAACTTTTCGTTGATATTCCACTTTACATCTAGTCAATTGTGTTCAT ] [-] EMBL CD078837 [ TTCAGCTGTTACAGGATACATGATACTTTCGATAATGGCGACTCCTGACTTGTGATAGTTCGGCTCTGTCTTGTCAGTGCGCACACGTAAAACTTTCCAACCGACACCAGGAACGCATACACATTCTACAATTTTTCCGTCTAAAACTTTATCACGTGAACTAACATGTGCCAGCTTGGCAGATGGCACCGTAAGACCACCAAGAAAGAGAAGTCCAACGTAACCCGGAATTTCACCAACTTTTCGTTGATATTCCACTTTACATCTAGTCAATTGTGTTCATACTTGGAGGTTTCCATTTTAACGTTTGTGGGCAGGTTCCAAGAACATAAAAATCTTCAGGACCACAAGGCTGAAATACAAGGCCATCTGTTGAGTGGTCCAAACTTTGCAAGAACGCAGGTTTGAGTAGCTCTTCAGTATCTTGCAGTGCGCGAAATGCTTTTCGCCTGACCGAAAAAGATTGAGTACTAAAGTCAACTAGTCCCAAGTGACCACCGGTATTCCTGGGCCATATAACTTGTTTGTCAGTTGTAGAATAACGTTCAAAAAATGCAGACCGACCAATGGGTTTATTGTTTAAAGTAATTATATCATAGATTAAGAATCTAGGTGTTCC ] [-] EMBL CD197290 [ AGAACATAAAAATCTTCAGGACCACAAGGCTGAAATACAAGGCCATCTGTTGAGTGGTCCAAACTTTGCAAGAACGCAGGTTTGAGTAGCTCTTCAGTATCTTGCAGTGCGCGAAATGCTTTTCGCCTGACCGAAAAAGATTGAGTACTAAAGTCAACTAGTCCCAAGTGACCACCGGTATTCCTGGGCCATATAACTTGTTTGTCAATTGTAGAATAACGTTCAAAAAATGCAGACCGACCAATGGGTTTATTGTTTAAAGTAATTATATCATAGATTAAGAATCTAGGTGTTCCAGATACTTCTGATGTAGATATGTTAGGCGGTTTGGAATGGTCATGACAAAGTACAAGTTCACCATCCAAAAGCGTATTAAATAAGTGACCATCAGGATCATTTAGGAAGTCTGGACGACCAGAATGATCCCATAT] [-] EMBL CD171542 [ CCGANAAAGATTGAGTACTANAGTCAACTAGTCCCAAGTGACCACCGGTATTCCTGGGCCATATAACTTGTTTGTCAATTGTAGAATAACGTTCAAAAAATGCAGACCGACCAATGGGTTTATTGTTTAAAGTAATTATATCATAGATTAAGAATCTAGGTGTTCCAGATACTTCTGATGTAGATATGTTAGGCGGTTTGGAATGGTCATGACAAAGTACAAGTTCGCCATCCAAAAGCGTATTAAATAAGTGACCATCAGGATCATTTAGGAAGTCTGGACGAC ] consensusID : consensus_10701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 512 fasta sequence [TGAAATTTATATTCCATTTCACGCTGATCATACTTGCTTGTGTTCGCATCATCATCACTTTCGTCATCGTCATCATCATTGTCGAATTCATTCCAAATGGTTGATCTCATTGAAAACGTTTTAGGCGTCTCCATAATAGGTAAACTTGATGGTGGTATACGCACTAAGGGATAACATGATATATGAGATCTGGGCACAAGGCCTCGTTGACCTTCAGAATTTTCAGCTAACATCCATTCTATCTCACCAGGTGGCTCACGATCAACTATAGTGAGAAGTTCATTTGGTTTAAGCGGCAATTCATCTGGTTCTAAATGAGCATCTATGGAACCTGGTCCAGCTGCTTCTATTCCTCTTTACATCTGAAGTCAATTGTGTTCATACTTGGAGGTTTCCATTTTAGCGTTTGTGGGCAGGTTCCAAGAACATAAAAATCTTCAGGACCACAAGGCTGAAATACAAGGCCATCTGTTGAGTGGTCCAAACTTTGCAAGAACGCAGGTTTGAGTAGC] [+] EMBL CD181378 [TGAAATTTATATTCCATTTCACGCTGATCATACTTGCTTGTGTTCGCATCATCATCACTTTCGTCATCGTCATCATCATTGTCGAATTCATTCCAAATGGTTGATCTCATTGAAAACGTTTTAGGCGTCTCCATAATAGGTAAAC ] [-] EMBL CD158909 [ TGATCTCATTGAAAACGTTTTAGGCGTCTCCATAATAGGTAAACTTGATGGTGGTATACGCACTAAGGGATAACATGATATATGAGATCTGGGCACAAGGCCTCGTTGACCTTCAGAATTTTCAGCTAACATCCATTCTATCTCACCAGGTGGCTCACGATCAACTATAGTGAGAAGTTCATTTGGTTTAAGCGGCAATTCATCTGGTTCTAAATGAGCATCTATGGAACCTGGTCCAGCTGCTTCTATTCCTCTTTACATCTGAAGTCAATTGTGTTCATACTTGGAGGTTTCCATTTTAGCGTTTGTGGGCAGGTTCCAAGAACATAAAAATCTTCAGGACCACAAGGCTGAAATACAAGGCCATCTGTTGAGTGGTCCAAACTTTGCAAGAACGCAGGTTTGAGTAGC] consensusID : consensus_10701#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [TGGAATCACTATCATTGAGCTTTATTGNGACAAAAAAACACTGTACCGTGATACCCTTGTCACTTGAGTATCTTGGTATNTGCGTATATTCAGTATCTACAGTAATTAGGAGTGTTGGACTCAATACTCTCTGCCTAGAGCTACGTACCCAAGACCAATCAATTGGTGAAACAACTCAGGGTGCATCATATGATTCAGTTGTTCTTGTTGGAGCTTATCGTATTCGTCTGGATGTAACCTCTTTGATAATGGCCTCAGTGAATCCAGTGTCCTCAACAGGAACCACTAAAGCAAGCGTTTACATCCCCAGATCAGCCATATAATATTAGTAGCTATGAAAAATATGGATGTTTTCAACCACTGTATTCTGTTTCATCCTATTAAACATAGAGGATTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAAAAAAAAAAAAA] [-] EMBL AI395770 [TGGAATCACTATCATTGAGCTTTATTGNGACAAAAAAACACTGTACCGTGATACCCTTGTCACTTGAGTATCTTGGTATNTGCGTATATTCAGTATCTACAGTAATTAGGAGTGTTGGACTCAATACTCTCTGCCTAGAGCTACGTACCCAAGACCAATCAATTGGTGAAACAACTCAGGGTGCATCATATGATTCAGTTGTTCTTGTTGGAGCTTATCGTATTCGTCTGGATGTAACCTCTTTGATAATGGCCTCAGTGAATCCAGTGTCCTCAACAGGAACCACTAAAGCAAGCGTTTACATCCCCAGATCAGCCATATAATATTAGTAGCTATGAAAAATATGGATGTTTTCAACCACTGTATTCTGTTTCATCCTATTAAACATAGAGGATTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAAAAAAAAAAAAA] consensusID : consensus_10701#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 479 fasta sequence [TTTTTTTTTTTTTTTTTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATTCAGAAAGAAAATACTGTACTGAACAGACTGATAATCATGCAATTTTTACAAACAAGTTAGGTGGTTATAGTTTCTAAATCATGAGATCATTATTTGTGATGTGTTCCAGTAGGTTCTCGAGAAAAAAAGGCTTGTTGTTGTGGATTTGTCTTGTTCTGACGTTGTCGAACACACATAACCAGCTGTTCAGCTGTTACAGGATACATGATACTTTCCATAATGGCGACTCCTGACTTGTGAAAGTTCGGCTCTGTCTTGTCAGTGCGCACACGTAAAATTTCCAACCGACACCAGGAAGCATACAATTCTACATTTTTCCGTCTAAAGCTTTACAA] [+] EMBL AI395759 [TTTTTTTTTTTTTTTTTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATTCAGAAAGAAAATACTGTACTGAACAGACTGATAATCATGCAATTTTTACAAACAAGTTAGGTGGTTATAGTTTCTAAATCATGAGATCATTATTTGTGATGTGTTCCAGTAGGTTCTCGAGAAAAAAAGGCTTGTTGTTGTGGATTTGTCTTGTTCTGACGTTGTCGAACACACATAACCAGCTGTTCAGCTGTTACAGGATACATGATACTTTCCATAATGGCGACTCCTGACTTGTGAAAGTTCGGCTCTGTCTTGTCAGTGCGCACACGTAAAATTTCCAACCGACACCAGGAAGCATACAATTCTACATTTTTCCGTCTAAAGCTTTACAA] [+] EMBL AI394862 [TTTTTTTTTTTTTTTTTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATTCAGAAAGAAAATACTGTACTGAACAGACTGATAATCATGCAATTCGTACAAACAAGTTAGGTGGTTATAGTTTCTAGATCATGAGATCATTATTTGTGATGTGTTCCAGTAGGTTCTCGAGAAGAAGAGGCTTGTTGTTGTGGATTTTGCTTGTTCTGACGTTGTCNAACACACATAACCAGCTGTTCAGCTGTTACAGGATACATGATACTCTCCATAATG ] consensusID : consensus_10701#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [TAAAACACCTCCTGGGTATGGCTCACGCAGTTTACAAACGGGAAATAAAGAATCTTCCAGTGGATCGACACCGTCTGACGAGCTGATATTTGTATATGTGATTCGAGCGCAGTTATCCGTACGTTTGTATGTAATATCATTAAATGTTTTACTTTTGCATTCAAAGTAAGTAATAAGCGATCGTTTTATTACAAAGGTGTTTTCAAAATCCATTTATGGATGCGTGTCACGCCTCTATTGTCTACCACTAATATAGTGGTTTCTCAAATTCAAATAGTCATTTTTGTAACCTTGAACTATTAAGGTTGCAGATAACTTTATTAGGACTAGTAGTGTCAGTGAAATAATTAAATTTTCTCGTGTGTGGTGTCACCACTACTTACACACACCAGCGTTTAATAATACACCGAAACGGACAAGTCGTCTAAAAAAACAGTGCTAGTAGAGCAGCCACTCA] [-] EMBL CD202407 [TAAAACACCTCCTGGGTATGGCTCACGCAGTTTACAAACGGGAAATAAAGAATCTTCCAGTGGATCGACACCGTCTGACGAGCTGATATTTGTATATGTGATTCGAGCGCAGTTATCCGTACGTTTGTATGTAATATCATTAAATGTTTTACTTTTGCATTCAAAGTAAGTAATAAGCGATCGTTTTATTACAAAGGTGTTTTCAAAATCCATTTATGGATGCGTGTCACGCCTCTATTGTCTACCACTAATATAGTGGTTTCTCAAATTCAAATAGTCATTTTTGTAACCTTGAACTATTAAGGTTGCAGATAACTTTATTAGGACTAGTAGTGTCAGTGAAATAATTAAATTTTCTCGTGTGTGGTGTCACCACTACTTACACACACCAGCGTTTAATAATACACCGAAACGGACAAGTCGTCTAAAAAAACAGTGCTAGTAGAGCAGCCACTCA] consensusID : consensus_10701#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [CAACTCAGGGCTTCATCATATGATTCAGTTGTTCTTGTTGGGGCTTATGTATTCGTCTGGATGTACCTCTTTGATAATGGCCTCAGTGAATCCAGTGTCCTCAACAGGAACCACTAAAGCAAGCGTTTACATCCCCAGATCAGCCATATAATATTAGTAGCTATGAAAAATATGGATGTTTTCAACCACTGTATTCTGTTTCATCCTATTAAACATAGAGGATTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATTCAGAAAGAAAATACTGTACTGAAAAAAAAAAAAAAAAAA] [-] EMBL AI394946 [CAACTCAGGGCTTCATCATATGATTCAGTTGTTCTTGTTGGGGCTTATGTATTCGTCTGGATGTACCTCTTTGATAATGGCCTCAGTGAATCCAGTGTCCTCAACAGGAACCACTAAAGCAAGCGTTTACATCCCCAGATCAGCCATATAATATTAGTAGCTATGAAAAATATGGATGTTTTCAACCACTGTATTCTGTTTCATCCTATTAAACATAGAGGATTACAAAGATTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAATTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATTCAGAAAGAAAATACTGTACTGAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 AGTTTACTGAGGTTCTACACCTTTACTATTGCTGCTGATGGTGGTCATCTGACTGTTTTG 60 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 TCACTGCTGTTAAATGCGGGAGCGTTAGTCAACACTATTAATTGCCATGGTGAATGTGCT 120 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 CTTACCCGTGCTACCCGTCGTGGATGGGTTCACTGTGCACGATTTCTCTTAAGCCATGGA 180 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 GCTAATCCGAATCCGATGCCATCTGATGGACATACTTTTGTGGTATCGCCATTACATTTA 240 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 GCTCGCCAAATGCATCAAACAGTTATAGAACAAGATATTTTAAAAAGAACAGTTGAGATT 300 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 GATAAAGCTGTTGCTGAAATAGTATCAACGACTCTACCAAATCATCTGACTTTGATAGAA 360 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 CCAGGACATTTACCAGAGACAATGTCTTTAAGTTTGTTTCCTGTTCAAATCTTCTCTTCA 420 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 GAAGAGCTTAGTCGCTTTGTTTTGTACTTTAAAACACCTCCTGGGTATGGCTCACGCAGT 480 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 TTACAAACGGGAAATAAAGAATCTTCCAGTGGATCGACACCGTCTGACGAGCTGATATTT 540 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 GTATATGTGATTCGAGCGCAGTTATCCGACAATCATGTTTCTTGCTGGCTCACTGGACCT 600 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ---------------------------------------------TGAAATTTATATTCC 15 consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ----TGGAATCACTATCATTGAGCTTTATTGNGACAAAAAAACACTGTACCGTGATACCC 56 consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 CCCATGGAATCACTATCATTGAGCTTTAATGGGACAAAAAAACACTGTACCGTGATACCC 660 consensus_10701#3 -------------TTTTTTTTTTTTTTTTTACAAAGATTTCAAAATGTACTTGACAAAAA 47 consensus_10701#1 ATTTCACGCTGATCATACTTGCTTGTGTTCGCATCATCATCACTTTCGTCATCGTCATCA 75 consensus_10701#4 ------TAAAACACCTCCTGGGTATGGCTCACGCAGTTTACAAACGGGAAATAAAGAATC 54 consensus_10701#2 TTGTCACTTGAGTATCTTGGTATNTGCGTATATTCAGTATCTACAGTAATTAGGAGTGTT 116 consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 TTGTCACCTGAGTATTCTGGTATCTGCGTATATTCAGTATCTACAGTAATTAGGAGTGGT 720 consensus_10701#3 ATATCACAAGATAGAAACGACAGTT-TTTGTACACAAATTATTTCTTACAAAAGTTTGTC 106 consensus_10701#1 TCATTGTCGAATTCATTC--CAAATGGTTGATCTCATTGAAAACGTTTTAGGCGTCTCCA 133 consensus_10701#4 TT-CCAGTGGATCGACAC--CGTCTGACGAGCTGATATTTGTATATGTGATTCGAGCGCA 111 consensus_10701#2 GGACTCAATACTCTCTGCCTAGAGCTACGTACCCAAGACC--AATCAATTGGTGAAACAA 174 consensus_10701#5 ---------------------------------------------------------CAA 3 consensus_10701#0 GGACTCAATACTCTCTGCCTAGAGCTACGTACCCAAGACC--AATCAATTGGTGAAACAA 778 consensus_10701#3 TGTTTTCATATTTGCAGGAATGATATTCATATTTAATTCAGAAAGAAAATACTGTACTGA 166 consensus_10701#1 TAA-TAGGTAAACTTGATGGTGGTATACGCACTAAGGGATAACATGATATATGAGATCTG 192 consensus_10701#4 GTTATCCGTACGTTTGTATGTAATAT---CATTAAATGTTTTACTTTTGCATTCAAAGTA 168 consensus_10701#2 CTCAGGG-TGCATCATATGATTCAGTTGTTCTTGTTGGA-GCTTATC---GTATTCGTCT 229 consensus_10701#5 CTCAGGGCTTCATCATATGATTCAGTTGTTCTTGTTGGG-GCTTAT----GTATTCGTCT 58 consensus_10701#0 CTCAGGG-TGCATCATATGATTCAGTTGTTCTTGTTGGA-GCTTATC---GTATTCGTCT 833 consensus_10701#3 ACAGACTGATAATCATGCAATTTTTACAAACAAGTTAGGTGGTTATA---GTTTCTAAAT 223 consensus_10701#1 GGCACAAGGCCTCGTTGACCTTCAGAATTTTCAGCTAAC-ATCCATT---CTATCTCACC 248 consensus_10701#4 AGTAATAAGCGATCGTTTTATTACAAAGGTGTTTTCAAA-ATCCATTTATGGATGCGTGT 227 * ** ** * consensus_10701#2 GGATGTAACCTCTTTGATAAT--G-GCCTCAGTGAATCCAGTGTCCTCAACAGGAACCAC 286 consensus_10701#5 GGATGTA-CCTCTTTGATAAT--G-GCCTCAGTGAATCCAGTGTCCTCAACAGGAACCAC 114 consensus_10701#0 GGATGTAACCTCTTTGATAAT--G-GCCTCAGTGAATCCAGTGTCCTCAACAGGAACCAC 890 consensus_10701#3 CATGAGATCATTATTTGTGAT--GTGTTCCAGTAGGTTC--TCGAGAAAAAAAGGCTTGT 279 consensus_10701#1 AGGTGGCTCACGATCAACTAT--AGTGAGAAGTTCATTTGGTTTAAGCGGCAATTCATCT 306 consensus_10701#4 CACGCCTCTATTGTCTACCACTAATATAGTGGTTTCTCAAATTCAAATAGTCATTTTTGT 287 * * ** * * consensus_10701#2 TAAAGCAAGCGTTTACATCCCCAGATCAGCCATATA-ATATTAGTAGCTATGAAAAATAT 345 consensus_10701#5 TAAAGCAAGCGTTTACATCCCCAGATCAGCCATATA-ATATTAGTAGCTATGAAAAATAT 173 consensus_10701#0 TAAAGCAAGCGTTTACATCCCCAGATCAGCCATATA-ATATTAGTAGCTATGAAAAATAT 949 consensus_10701#3 TGTTGTGGATTTGTCTTGTTCTGACGTTGTCGAACACACATAACCAGCTGTTCAGCTGTT 339 consensus_10701#1 GGTTCTAAATGAGCATCTATGGAACCTGGTCCAGCTGCTTCTATTCCTCTTTACATCTGA 366 consensus_10701#4 AACCTTGAACTATTAAGGTTGCAGA-TAACTTTATTAGGACTAGTAG-TGTCAGTGAAAT 345 * * consensus_10701#2 GGATGTTTTCAACCACTGTATTCTGTTTC-ATCCTATTAAACATAGAGGATTA-CAAAGA 403 consensus_10701#5 GGATGTTTTCAACCACTGTATTCTGTTTC-ATCCTATTAAACATAGAGGATTA-CAAAGA 231 consensus_10701#0 GGATGTTTTCAACCACTGTATTCTGTTTC-ATCCTATTAAACATAGAGGATTA-CAAAGA 1007 consensus_10701#3 ACAGGATACATGATACTTTCCATAATGGC-GACTCCTGACTTGTGAAAGTTCGGCTCTGT 398 consensus_10701#1 AGTCAATTGTGTTCATACTTGGAGGTTTCCATTTTAGCGTTTGTGGGCAGGTTCCAAGAA 426 consensus_10701#4 AATTAAATTTTCTCGTGTGTGGTGTCACCACTACTTACACACACCAGCGTTTAATAAT-A 404 * consensus_10701#2 TTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAA 463 consensus_10701#5 TTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAA 291 consensus_10701#0 TTTCAAAATGTACTTGACAAAAAATATCACAAGATAGAAACGACAGTTTTTGTACACAAA 1067 consensus_10701#3 CTTGTCAGTGCGCAC-ACGTAAAATTTC-CAACCGACACCAGGAAGCATACAATTCTACA 456 consensus_10701#1 CATAAAAATCTTCAGGACCACAAGGCTGAAATACAAGGCCATCTGTTGAGTGGTCCAAAC 486 consensus_10701#4 CACCGAAACGGACAAGTCGTCTAAAAAAACAGTGCTAGTAGAGCAGCCACTCA------- 457 * * * * * consensus_10701#2 TTATTTCTTACAAAAAAAAAAAAAAAA--------------------------------- 490 consensus_10701#5 TTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATT 351 consensus_10701#0 TTATTTCTTACAAAAGTTTGTCTGTTTTCATATTTGCAGGAATGATATTCATATTTAATT 1127 consensus_10701#3 TTTTTCCGTCTAAAGCTTTACAA------------------------------------- 479 consensus_10701#1 TTTGCAAGAACGCAGGTTTGAGTAGC---------------------------------- 512 consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 CAGAAAGAAAATACTGTACTGAAAAAAAAAAAAAAAAAA--------------------- 390 consensus_10701#0 CAGAAAGAAAATACTGTACTGAAAGGTGGTTATAGTTTCTAGATCATGAGATCATTATTT 1187 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 GTGATGTGTTCCAGTAGGTTCTCGAGAAGAAGAGGCTTGTTGTTGTGGATTTGTCTTGTT 1247 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 CTGACGTTGTCGAACACACATAACCAGCTGTTCAGCTGTTACAGGATACATGATACTTTC 1307 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 GATAATGGCGACTCCTGACTTGTGATAGTTCGGCTCTGTCTTGTCAGTGCGCACACGTAA 1367 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 AACTTTCCAACCGACACCAGGAACGCATACACATTCTACAATTTTTCCGTCTAAAACTTT 1427 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 ATCACGTGAACTAACATGTGCCAGCTTGGCAGATGGCACCGTAAGACCACCAAGAAAGAG 1487 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 AAGTCCAACGTAACCCGGAATTTCACCAACTTTTCGTTGATATTCCACTTTACATCTAGT 1547 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 CAATTGTGTTCATACTTGGAGGTTTCCATTTTAACGTTTGTGGGCAGGTTCCAAGAACAT 1607 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 AAAAATCTTCAGGACCACAAGGCTGAAATACAAGGCCATCTGTTGAGTGGTCCAAACTTT 1667 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 GCAAGAACGCAGGTTTGAGTAGCTCTTCAGTATCTTGCAGTGCGCGAAATGCTTTTCGCC 1727 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 TGACCGAAAAAGATTGAGTACTAAAGTCAACTAGTCCCAAGTGACCACCGGTATTCCTGG 1787 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 GCCATATAACTTGTTTGTCAATTGTAGAATAACGTTCAAAAAATGCAGACCGACCAATGG 1847 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 GTTTATTGTTTAAAGTAATTATATCATAGATTAAGAATCTAGGTGTTCCAGATACTTCTG 1907 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 ATGTAGATATGTTAGGCGGTTTGGAATGGTCATGACAAAGTACAAGTTCACCATCCAAAA 1967 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ------------------------------------------------------------ consensus_10701#5 ------------------------------------------------------------ consensus_10701#0 GCGTATTAAATAAGTGACCATCAGGATCATTTAGGAAGTCTGGACGACCAGAATGATCCC 2027 consensus_10701#3 ------------------------------------------------------------ consensus_10701#1 ------------------------------------------------------------ consensus_10701#4 ------------------------------------------------------------ consensus_10701#2 ---- consensus_10701#5 ---- consensus_10701#0 ATAT 2031 consensus_10701#3 ---- consensus_10701#1 ---- consensus_10701#4 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||