These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [TTTGCTAAACAAGAAGATGCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTGAAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATGTACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATCCACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAATTGGTGGTCAAGCAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTAATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTGTTCGACTTCCAATACCATATGAAACAATTAAATCCGGAAATGATTCAATAACAGGTTATTTCTTAGGTAAAGATCCTGTTTATACACCTCAATGGACAAGAATGATGGAACCAGTTATTATAGCTACAGAAGCAGACGAAATTACCCCAGATGATATCATTAATCCACCAGCTGAAGTAACTGTTCCATTTATGCAACCATATATAGTTCAAGT] [+] EMBL CD188725 [TTTGCTAAACAAGAAGATGCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTGAAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATGTACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATCCACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAATTGGTGGTCAAGCAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTAATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTGTTCGACTTCCAATACCATATGAAACAATTAAATCCGGAAATGATTCAATAACAGGTTATTTCTTAGGTAAAGATCCTGTTTATACACCTCAATGGACAAGAATGATGGAACCAGTTATTATAGCTACAGAAGCAGACGAAATTACCCCAGATGATATCATTAATCCACCAGCTGAAGTAACTGTTCCATTTATGCAACCATATATAGTTCAAGT] consensusID : consensus_1071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [TATTTCATAAACTGTTAAACCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTGAAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATGTACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATCCACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAATTGGTGGTCAAGTAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTAATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTGTTCGACTTCCAATACCATATGAAAC] [+] EMBL CD187665 [TATTTCATAAACTGTTAAACCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTGAAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATGTACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATCCACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAATTGGTGGTCAAGTAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTAATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTGTTCGACTTCCAATACCATATGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1071#0 --TTTGCTAAACAAGAAGATGCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTG 58 consensus_1071#1 TATTTCATAAACTGTTAAAC-CTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTG 59 *** ***** * * *************************************** consensus_1071#0 AAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATG 118 consensus_1071#1 AAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATG 119 ************************************************************ consensus_1071#0 TACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATC 178 consensus_1071#1 TACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATC 179 ************************************************************ consensus_1071#0 CACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAA 238 consensus_1071#1 CACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAA 239 ************************************************************ consensus_1071#0 TTGGTGGTCAAGCAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTA 298 consensus_1071#1 TTGGTGGTCAAGTAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTA 299 ************ *********************************************** consensus_1071#0 ATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTG 358 consensus_1071#1 ATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTG 359 ************************************************************ consensus_1071#0 TTCGACTTCCAATACCATATGAAACAATTAAATCCGGAAATGATTCAATAACAGGTTATT 418 consensus_1071#1 TTCGACTTCCAATACCATATGAAAC----------------------------------- 384 ************************* consensus_1071#0 TCTTAGGTAAAGATCCTGTTTATACACCTCAATGGACAAGAATGATGGAACCAGTTATTA 478 consensus_1071#1 ------------------------------------------------------------ consensus_1071#0 TAGCTACAGAAGCAGACGAAATTACCCCAGATGATATCATTAATCCACCAGCTGAAGTAA 538 consensus_1071#1 ------------------------------------------------------------ consensus_1071#0 CTGTTCCATTTATGCAACCATATATAGTTCAAGT 572 consensus_1071#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||