These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10732#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 900 fasta sequence [GCGCAACCGCGCGAGTTTAACAGGACGGCTGGAAAAGAACGACGAAG-TTTCGCAAGGAACC-GAAATTTTCATTGTACTATATTTCTTTA-TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG-TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGCACCAGATCACGTTTCAACACGGCGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTCATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCAAATTTAGAAGGTGCTACTGGTAACTAGTTGTAAAACTAGAACATCCGTTGCATCATCATTGGTGAGACCGACGTGATCTGGTACACCAAGTCAATATACTGTGAGTCTGTTCCATTTTGGAATATTATTATTCATTGTTATTCTTTATTTGAATTTTATATATTGTGACATACTTTTTTCGCGAATTTTTTTTTCTCGGATATATTTTAATTAGACATTTTTCGTTATCTATATTAATATGACGGAACACTCACCCAAGGTTTTTAAGTTAAAGTCTATTCCCCCTATTTCGATTCAGTTAACGCCATTTTTGGCCGACAATATCTAGTCCTGGGTCTGCTATGCAGAAGCCGATTTTTGCATGCACGGTATCACG] [-] EMBL CD135952 [GCGCAACCGCGCGAGTTTAACAGGACGGCTGGAAAAGAACGACGAAGTTTTCCGAAGGAACC GANATTTTCATTGTATTTTATTTCGTTA TTGTTATGTTGTACATTTTGGTCCCTTAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCCCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTTTCTAAGTGTTCGACATTGGATGCTGACCA ] [-] EMBL CD132227 [ ttACCGCGCGAGTTTAACAGGACGGCTGGAAAAGAACGACGAAG TTTCGCAAGGAACA GAAATTTTCATTGTACTATATTTCTTTATTTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATG ] [+] EMBL CD132448 [ GTTCAACAGGACGGCTGGAAAAGAACGACGAAG TTTCGCAAGGAACC GAAATTTTCATTGTACTATATTTCTTTA TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTG TCGACATTGGATGCTGACCACGTTG TTAAAGTGAACTTGTTTAGCTGAAGGCTTTCGGTCA ] [+] EMBL CD136424 [ CTGGAAAAGAACGACGAAG TTTCGCAAGGAACC GAAATTTTCATTGTACTATATTTCTTTA TGGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGCCACGTCTTAGG ] [+] EMBL CD117957 [ TGGAAAAGAACGACGAAG TTTCGCAAGAAACCGGAATTTTTCATTGTACTGTATTTCTTTA TTGCTATGTTGTACATTTTGGTCCCATAGTTTAGGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACC ] [+] EMBL CD141553 [ AAAGAACGACGAAG TTTCGCAAGGAACC GAAATTTTCATTGTACTATATTTCTTTA TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGCAC ] [+] EMBL CD168872 [ AAG TTTCGCAAGGAACC GAAATTTTCATTGTACTATATTTCTTTA TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTT ] [+] EMBL CD135986 [ CAAGGAACC GAAATTTTCATTGTACTATATTTCTTTA TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCGGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACC ] [+] EMBL CD193398 [ AAATTTTCATTGTGCTATATTTCTTTA TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACC ] [-] EMBL CD135106 [ TTGGTCCCTTAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCTCGTCTTAGGGGCATCACTACCCCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAGATCAATAGCTTTCTAAGTGTTCGACATTGGATGCTGACCACGTCG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGTACCAGATCACGTTTCAACTCGGCGTGTGACACTGCTCCTACG TTCATTAGC ] [-] EMBL CD193352 [ AGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCA ] [+] EMBL AA559779 [ agcgaACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGCACCAAATCACNTTTCAATACTGCGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTCATANAAAAGGTCCTCGATATATTGGTAACAAATCAAATATATCTTT ] [+] EMBL AA559558 [ GGCATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATNCCCCAAAATCAATAGCTCNTTAAGTGTTCGACATTGGATGCTGACCACNTTG TTTAANTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCNCACCAAATCACNTTTCGACTCGGCGTGGGACACAGCTCCTACGTTTCATTANCCAGCTCATANAAAAGGTCCTCNATATNTTGGTAACAAATCAAATATATCTTn ] [-] EMBL CD138026 [ TACCTCACTA GGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTTTCTAAGTGTTCGACATTGGATGCTGACCACGTTGTTTTAAGTGGACTTGTTTAACTGAAGGCTTTCGGTCATGCATCCGTACCAGATCACGTTTCGACCCAACGTGGGA ] [-] EMBL CD165333 [ TCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGCACCAGATCACGTTTCAATACTGCGTGGGACACAGCTCCTACGTTTCATTGGCCAGCTCATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCAAATTTAGAAGGTGCTACTGGTAACTAGTTGTAAAACTAGAACATCCGTTG ] [-] EMBL CD182459 [ TGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGCACCAGATCACGTTTCAACACGACGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTTATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATAT ] [+] EMBL AI067132 [ TACGTTTCATTAGCCAGCTCATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCAAATTTAGAAGGTGCTACTGGTAACTAGTTGTAAAACTAGAACATCCGTTGCATCATCATTGGTGAGACCGACGTGATCTGGTACACCAAGTCAATATACTGTGAGTCTGTTCCATTTTGGAATATTATTATTCATTGTTATTCTTTATTTGAATTTTATATATTGTGACATACTTTTTTCGCGAATTTTTTTTTCTCGGATATATTTTAATTAGACATTTTTCGTTATCTATATTAATATGACGGAACACTCACCCAAGGTTTTTAAGTTAAAGTCTATTCCCCCTATTTCGATTCAGTTAACGCCATTTTTGGCCGACAATATCTAGTCCTGGGTCTGCTATGCAGAAGCCGATTTTTGCATGCACGGTATCACG] consensusID : consensus_10732#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [TACGGTAAAAGGACGACTGGAAAAGTACGACGAAGTTTTCCCAAGGAACCGAAATTTTCATTGTATTTTAATTCTTTATTGTTATGTTGTACATCATGGTCCCTTAGTTTCAGGAAAGCAGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGCTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGTATCACTACCTCACTAGGAGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTTTCTAAGTGTTCGACATTGGATGCTGACCACGTTGTTCAAGGGGACTTGT] [-] EMBL CD202066 [TACGGTAAAAGGACGACTGGAAAAGTACGACGAAGTTTTCCCAAGGAACCGAAATTTTCATTGTATTTTAATTCTTTATTGTTATGTTGTACATCATGGTCCCTTAGTTTCAGGAAAGCAGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGCTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGTATCACTACCTCACTAGGAGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTTTCTAAGTGTTCGACATTGGATGCTGACCACGTTGTTCAAGGGGACTTGT] consensusID : consensus_10732#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [CCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCATGTTGTTTAAGTGGACTTGTTTAACTGAAGGCTTTCGGTCATGCATCCGTGCCAGATCACGTTTCAACACGGCGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTTATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGCGAACGATCGAATATAGAAGGTGCTACTGGTAGCTAGTTGTAAAACTAGAACATCCGTTGCATCATNCAAATCTTTGT] [+] EMBL CD199194 [CCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCATGTTGTTTAAGTGGACTTGTTTAACTGAAGGCTTTCGGTCATGCATCCGTGCCAGATCACGTTTCAACACGGCGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTTATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGCGAACGATCGAATATAGAAGGTGCTACTGGTAGCTAGTTGTAAAACTAGAACATCCGTTGCATCATNCAAATCTTTGT] consensusID : consensus_10732#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [ATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGTACCAGATCACGTTGCAACACGGCGTGGGACACAGCTCCTACGTTCATTAGCCAGCTTATAGTAAAGGTTCCTCGATATATTGGTAACGAATCAAATATATTTTTCCTGCCTCTTCTCGTCTGACTTCTGGTTTCTATTTGACTGGGAACGAACGATAATAGAAGATACTACTGGTGGCTAGTTGTAAAACTAGAACATCCGTGGTATCCTCAGTGNGT] [+] EMBL CD130296 [ATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGTACCAGATCACGTTGCAACACGGCGTGGGACACAGCTCCTACGTTCATTAGCCAGCTTATAGTAAAGGTTCCTCGATATATTGGTAACGAATCAAATATATTTTTCCTGCCTCTTCTCGTCTGACTTCTGGTTTCTATTTGACTGGGAACGAACGATAATAGAAGATACTACTGGTGGCTAGTTGTAAAACTAGAACATCCGTGGTATCCTCAGTGNGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10732#2 ------------------------------------------------------------ consensus_10732#3 ------------------------------------------------------------ consensus_10732#0 GCGCAACCGCGCGAGTTTAACAGGACGGCTGGAAAAGAACGACGAAGTTTCGCAAGGAAC 60 consensus_10732#1 ------------------------------------------------------------ consensus_10732#2 ------------------------------------------------------------ consensus_10732#3 ------------------------------------------------------------ consensus_10732#0 CGAAATTTTCATTGTACTATATTTCTTTATTGCTACGTTGTACATTTTGGTCCCATAGTT 120 consensus_10732#1 ------------------------------------------------------------ consensus_10732#2 ------------------------------------------------------------ consensus_10732#3 ------------------------------------------------------------ consensus_10732#0 TAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAAC 180 consensus_10732#1 ------------------------------------------------------------ consensus_10732#2 ------------------------------------------------------------ consensus_10732#3 ------------------------------------------------------------ consensus_10732#0 GACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCAC 240 consensus_10732#1 ------------------------------------------------------------ consensus_10732#2 ----------------------------------CCCAAAATCAATAGCTCATTAAGTGT 26 consensus_10732#3 ----------------------------------------ATCAATAGCTCATTAAGTGT 20 consensus_10732#0 TAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGT 300 consensus_10732#1 ------------------------------------------------TACGGTAAAAGG 12 * *** * consensus_10732#2 TCGACATTGGATGC-TGACCATGTTGTTTAAGTGGACTTGTTTAACTGAAGGCTTTCGGT 85 consensus_10732#3 TCGACATTGGATGC-TGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGT 79 consensus_10732#0 TCGACATTGGATGC-TGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGT 359 consensus_10732#1 ACGACTGGAAAAGTACGACGAAGTTTTCCCAAGGAACCGAAATTTTCATTGTATTTTAAT 72 **** * * *** * *** * * * ** * * *** * consensus_10732#2 CATGCATC----CGTGCCAGATCACGTTTCAACACGGCGTGGGACACAGCTCCTACGTTT 141 consensus_10732#3 CATGCATC----CGTACCAGATCACGTTGCAACACGGCGTGGGACACAGCTCCTACGTT- 134 consensus_10732#0 CATGCATC----CGCACCAGATCACGTTTCAACACGGCGTGGGACACAGCTCCTACGTTT 415 consensus_10732#1 TCTTTATTGTTATGTTGTACATCATGGTCCCTTAGTTTCAGGAAAGCAGACCAGACGCTG 132 * ** * * **** * * * * ** * *** * *** * consensus_10732#2 C---ATTAGCCAGCTTATAGAAAAGGT-CCTCGATATATTGGTAACGAATCAAATATATC 197 consensus_10732#3 C---ATTAGCCAGCTTATAGTAAAGGTTCCTCGATATATTGGTAACGAATCAAATATATT 191 consensus_10732#0 C---ATTAGCCAGCTCATAGAAAAGGT-CCTCGATATATTGGTAACGAATCAAATATATC 471 consensus_10732#1 CTAAACGAAGCAAGCTATCAGAAGAGT------GTTTACCAACGACAAACTCGCTGGGTT 186 * * * ** ** ** ** * ** ** ** * * consensus_10732#2 T---TTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGCGAACGATCGAATA 254 consensus_10732#3 T---TTCCTGCCTCTTCTCGTCTGACTTCTGGTTTCTATTTGACTGGGAACGAACGATAA 248 consensus_10732#0 T---TTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCAAATT 528 consensus_10732#1 TAAACTTCTGGCTGGTCACGTCTTAGGGGT-ATCACTACCTCACTAGGAGGGGGGAGTGA 245 * * *** ** ** ***** * * * *** * *** ** * consensus_10732#2 TA-GAAGGTGCTACTGGTAGCT--AGTTGTAAAACTA---GAACATCCG---TTGCATCA 305 consensus_10732#3 TA-GAAGATACTACTGGTGGCT--AGTTGTAAAACTA---GAACATCCG---TGGTATCC 299 consensus_10732#0 TA-GAAGGTGCTACTGGTAACT--AGTTGTAAAACTA---GAACATCCG---TTGCATCA 579 consensus_10732#1 TCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTTTCTAAGTGTTCGACATTGGATGC 305 * * ** * * * * * * * * * ** * * ** * * ** consensus_10732#2 TNCAAATCTTTGT----------------------------------------------- 318 consensus_10732#3 TCAGTGNGT--------------------------------------------------- 308 consensus_10732#0 TCATTGGTGAGACCGACGTGATCTGGTACACCAAGTCAATATACTGTGAGTCTGTTCCAT 639 consensus_10732#1 TGACCACGTTGTTCAAGGGGACTTGT---------------------------------- 331 * consensus_10732#2 ------------------------------------------------------------ consensus_10732#3 ------------------------------------------------------------ consensus_10732#0 TTTGGAATATTATTATTCATTGTTATTCTTTATTTGAATTTTATATATTGTGACATACTT 699 consensus_10732#1 ------------------------------------------------------------ consensus_10732#2 ------------------------------------------------------------ consensus_10732#3 ------------------------------------------------------------ consensus_10732#0 TTTTCGCGAATTTTTTTTTCTCGGATATATTTTAATTAGACATTTTTCGTTATCTATATT 759 consensus_10732#1 ------------------------------------------------------------ consensus_10732#2 ------------------------------------------------------------ consensus_10732#3 ------------------------------------------------------------ consensus_10732#0 AATATGACGGAACACTCACCCAAGGTTTTTAAGTTAAAGTCTATTCCCCCTATTTCGATT 819 consensus_10732#1 ------------------------------------------------------------ consensus_10732#2 ------------------------------------------------------------ consensus_10732#3 ------------------------------------------------------------ consensus_10732#0 CAGTTAACGCCATTTTTGGCCGACAATATCTAGTCCTGGGTCTGCTATGCAGAAGCCGAT 879 consensus_10732#1 ------------------------------------------------------------ consensus_10732#2 --------------------- consensus_10732#3 --------------------- consensus_10732#0 TTTTGCATGCACGGTATCACG 900 consensus_10732#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||