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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10732#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 900 fasta sequence
[GCGCAACCGCGCGAGTTTAACAGGACGGCTGGAAAAGAACGACGAAG-TTTCGCAAGGAACC-GAAATTTTCATTGTACTATATTTCTTTA-TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG-TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGCACCAGATCACGTTTCAACACGGCGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTCATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCAAATTTAGAAGGTGCTACTGGTAACTAGTTGTAAAACTAGAACATCCGTTGCATCATCATTGGTGAGACCGACGTGATCTGGTACACCAAGTCAATATACTGTGAGTCTGTTCCATTTTGGAATATTATTATTCATTGTTATTCTTTATTTGAATTTTATATATTGTGACATACTTTTTTCGCGAATTTTTTTTTCTCGGATATATTTTAATTAGACATTTTTCGTTATCTATATTAATATGACGGAACACTCACCCAAGGTTTTTAAGTTAAAGTCTATTCCCCCTATTTCGATTCAGTTAACGCCATTTTTGGCCGACAATATCTAGTCCTGGGTCTGCTATGCAGAAGCCGATTTTTGCATGCACGGTATCACG]
[-] EMBL CD135952 [GCGCAACCGCGCGAGTTTAACAGGACGGCTGGAAAAGAACGACGAAGTTTTCCGAAGGAACC GANATTTTCATTGTATTTTATTTCGTTA TTGTTATGTTGTACATTTTGGTCCCTTAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCCCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTTTCTAAGTGTTCGACATTGGATGCTGACCA ]
[-] EMBL CD132227 [ ttACCGCGCGAGTTTAACAGGACGGCTGGAAAAGAACGACGAAG TTTCGCAAGGAACA GAAATTTTCATTGTACTATATTTCTTTATTTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATG ]
[+] EMBL CD132448 [ GTTCAACAGGACGGCTGGAAAAGAACGACGAAG TTTCGCAAGGAACC GAAATTTTCATTGTACTATATTTCTTTA TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTG TCGACATTGGATGCTGACCACGTTG TTAAAGTGAACTTGTTTAGCTGAAGGCTTTCGGTCA ]
[+] EMBL CD136424 [ CTGGAAAAGAACGACGAAG TTTCGCAAGGAACC GAAATTTTCATTGTACTATATTTCTTTA TGGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGCCACGTCTTAGG ]
[+] EMBL CD117957 [ TGGAAAAGAACGACGAAG TTTCGCAAGAAACCGGAATTTTTCATTGTACTGTATTTCTTTA TTGCTATGTTGTACATTTTGGTCCCATAGTTTAGGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACC ]
[+] EMBL CD141553 [ AAAGAACGACGAAG TTTCGCAAGGAACC GAAATTTTCATTGTACTATATTTCTTTA TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGCAC ]
[+] EMBL CD168872 [ AAG TTTCGCAAGGAACC GAAATTTTCATTGTACTATATTTCTTTA TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTT ]
[+] EMBL CD135986 [ CAAGGAACC GAAATTTTCATTGTACTATATTTCTTTA TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCGGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACC ]
[+] EMBL CD193398 [ AAATTTTCATTGTGCTATATTTCTTTA TTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACC ]
[-] EMBL CD135106 [ TTGGTCCCTTAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCTCGTCTTAGGGGCATCACTACCCCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAGATCAATAGCTTTCTAAGTGTTCGACATTGGATGCTGACCACGTCG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGTACCAGATCACGTTTCAACTCGGCGTGTGACACTGCTCCTACG TTCATTAGC ]
[-] EMBL CD193352 [ AGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCA ]
[+] EMBL AA559779 [ agcgaACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGCACCAAATCACNTTTCAATACTGCGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTCATANAAAAGGTCCTCGATATATTGGTAACAAATCAAATATATCTTT ]
[+] EMBL AA559558 [ GGCATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATNCCCCAAAATCAATAGCTCNTTAAGTGTTCGACATTGGATGCTGACCACNTTG TTTAANTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCNCACCAAATCACNTTTCGACTCGGCGTGGGACACAGCTCCTACGTTTCATTANCCAGCTCATANAAAAGGTCCTCNATATNTTGGTAACAAATCAAATATATCTTn ]
[-] EMBL CD138026 [ TACCTCACTA GGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTTTCTAAGTGTTCGACATTGGATGCTGACCACGTTGTTTTAAGTGGACTTGTTTAACTGAAGGCTTTCGGTCATGCATCCGTACCAGATCACGTTTCGACCCAACGTGGGA ]
[-] EMBL CD165333 [ TCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGCACCAGATCACGTTTCAATACTGCGTGGGACACAGCTCCTACGTTTCATTGGCCAGCTCATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCAAATTTAGAAGGTGCTACTGGTAACTAGTTGTAAAACTAGAACATCCGTTG ]
[-] EMBL CD182459 [ TGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTG TTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGCACCAGATCACGTTTCAACACGACGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTTATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATAT ]
[+] EMBL AI067132 [ TACGTTTCATTAGCCAGCTCATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCAAATTTAGAAGGTGCTACTGGTAACTAGTTGTAAAACTAGAACATCCGTTGCATCATCATTGGTGAGACCGACGTGATCTGGTACACCAAGTCAATATACTGTGAGTCTGTTCCATTTTGGAATATTATTATTCATTGTTATTCTTTATTTGAATTTTATATATTGTGACATACTTTTTTCGCGAATTTTTTTTTCTCGGATATATTTTAATTAGACATTTTTCGTTATCTATATTAATATGACGGAACACTCACCCAAGGTTTTTAAGTTAAAGTCTATTCCCCCTATTTCGATTCAGTTAACGCCATTTTTGGCCGACAATATCTAGTCCTGGGTCTGCTATGCAGAAGCCGATTTTTGCATGCACGGTATCACG]
consensusID : consensus_10732#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence
[TACGGTAAAAGGACGACTGGAAAAGTACGACGAAGTTTTCCCAAGGAACCGAAATTTTCATTGTATTTTAATTCTTTATTGTTATGTTGTACATCATGGTCCCTTAGTTTCAGGAAAGCAGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGCTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGTATCACTACCTCACTAGGAGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTTTCTAAGTGTTCGACATTGGATGCTGACCACGTTGTTCAAGGGGACTTGT]
[-] EMBL CD202066 [TACGGTAAAAGGACGACTGGAAAAGTACGACGAAGTTTTCCCAAGGAACCGAAATTTTCATTGTATTTTAATTCTTTATTGTTATGTTGTACATCATGGTCCCTTAGTTTCAGGAAAGCAGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGCTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGTATCACTACCTCACTAGGAGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTTTCTAAGTGTTCGACATTGGATGCTGACCACGTTGTTCAAGGGGACTTGT]
consensusID : consensus_10732#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence
[CCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCATGTTGTTTAAGTGGACTTGTTTAACTGAAGGCTTTCGGTCATGCATCCGTGCCAGATCACGTTTCAACACGGCGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTTATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGCGAACGATCGAATATAGAAGGTGCTACTGGTAGCTAGTTGTAAAACTAGAACATCCGTTGCATCATNCAAATCTTTGT]
[+] EMBL CD199194 [CCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCATGTTGTTTAAGTGGACTTGTTTAACTGAAGGCTTTCGGTCATGCATCCGTGCCAGATCACGTTTCAACACGGCGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTTATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGCGAACGATCGAATATAGAAGGTGCTACTGGTAGCTAGTTGTAAAACTAGAACATCCGTTGCATCATNCAAATCTTTGT]
consensusID : consensus_10732#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence
[ATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGTACCAGATCACGTTGCAACACGGCGTGGGACACAGCTCCTACGTTCATTAGCCAGCTTATAGTAAAGGTTCCTCGATATATTGGTAACGAATCAAATATATTTTTCCTGCCTCTTCTCGTCTGACTTCTGGTTTCTATTTGACTGGGAACGAACGATAATAGAAGATACTACTGGTGGCTAGTTGTAAAACTAGAACATCCGTGGTATCCTCAGTGNGT]
[+] EMBL CD130296 [ATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGTCATGCATCCGTACCAGATCACGTTGCAACACGGCGTGGGACACAGCTCCTACGTTCATTAGCCAGCTTATAGTAAAGGTTCCTCGATATATTGGTAACGAATCAAATATATTTTTCCTGCCTCTTCTCGTCTGACTTCTGGTTTCTATTTGACTGGGAACGAACGATAATAGAAGATACTACTGGTGGCTAGTTGTAAAACTAGAACATCCGTGGTATCCTCAGTGNGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10732#2 ------------------------------------------------------------
consensus_10732#3 ------------------------------------------------------------
consensus_10732#0 GCGCAACCGCGCGAGTTTAACAGGACGGCTGGAAAAGAACGACGAAGTTTCGCAAGGAAC 60
consensus_10732#1 ------------------------------------------------------------
consensus_10732#2 ------------------------------------------------------------
consensus_10732#3 ------------------------------------------------------------
consensus_10732#0 CGAAATTTTCATTGTACTATATTTCTTTATTGCTACGTTGTACATTTTGGTCCCATAGTT 120
consensus_10732#1 ------------------------------------------------------------
consensus_10732#2 ------------------------------------------------------------
consensus_10732#3 ------------------------------------------------------------
consensus_10732#0 TAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAAC 180
consensus_10732#1 ------------------------------------------------------------
consensus_10732#2 ------------------------------------------------------------
consensus_10732#3 ------------------------------------------------------------
consensus_10732#0 GACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCAC 240
consensus_10732#1 ------------------------------------------------------------
consensus_10732#2 ----------------------------------CCCAAAATCAATAGCTCATTAAGTGT 26
consensus_10732#3 ----------------------------------------ATCAATAGCTCATTAAGTGT 20
consensus_10732#0 TAGGGGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGT 300
consensus_10732#1 ------------------------------------------------TACGGTAAAAGG 12
* *** *
consensus_10732#2 TCGACATTGGATGC-TGACCATGTTGTTTAAGTGGACTTGTTTAACTGAAGGCTTTCGGT 85
consensus_10732#3 TCGACATTGGATGC-TGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGT 79
consensus_10732#0 TCGACATTGGATGC-TGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTTTCGGT 359
consensus_10732#1 ACGACTGGAAAAGTACGACGAAGTTTTCCCAAGGAACCGAAATTTTCATTGTATTTTAAT 72
**** * * *** * *** * * * ** * * *** *
consensus_10732#2 CATGCATC----CGTGCCAGATCACGTTTCAACACGGCGTGGGACACAGCTCCTACGTTT 141
consensus_10732#3 CATGCATC----CGTACCAGATCACGTTGCAACACGGCGTGGGACACAGCTCCTACGTT- 134
consensus_10732#0 CATGCATC----CGCACCAGATCACGTTTCAACACGGCGTGGGACACAGCTCCTACGTTT 415
consensus_10732#1 TCTTTATTGTTATGTTGTACATCATGGTCCCTTAGTTTCAGGAAAGCAGACCAGACGCTG 132
* ** * * **** * * * * ** * *** * *** *
consensus_10732#2 C---ATTAGCCAGCTTATAGAAAAGGT-CCTCGATATATTGGTAACGAATCAAATATATC 197
consensus_10732#3 C---ATTAGCCAGCTTATAGTAAAGGTTCCTCGATATATTGGTAACGAATCAAATATATT 191
consensus_10732#0 C---ATTAGCCAGCTCATAGAAAAGGT-CCTCGATATATTGGTAACGAATCAAATATATC 471
consensus_10732#1 CTAAACGAAGCAAGCTATCAGAAGAGT------GTTTACCAACGACAAACTCGCTGGGTT 186
* * * ** ** ** ** * ** ** ** * *
consensus_10732#2 T---TTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGCGAACGATCGAATA 254
consensus_10732#3 T---TTCCTGCCTCTTCTCGTCTGACTTCTGGTTTCTATTTGACTGGGAACGAACGATAA 248
consensus_10732#0 T---TTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCAAATT 528
consensus_10732#1 TAAACTTCTGGCTGGTCACGTCTTAGGGGT-ATCACTACCTCACTAGGAGGGGGGAGTGA 245
* * *** ** ** ***** * * * *** * *** ** *
consensus_10732#2 TA-GAAGGTGCTACTGGTAGCT--AGTTGTAAAACTA---GAACATCCG---TTGCATCA 305
consensus_10732#3 TA-GAAGATACTACTGGTGGCT--AGTTGTAAAACTA---GAACATCCG---TGGTATCC 299
consensus_10732#0 TA-GAAGGTGCTACTGGTAACT--AGTTGTAAAACTA---GAACATCCG---TTGCATCA 579
consensus_10732#1 TCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTTTCTAAGTGTTCGACATTGGATGC 305
* * ** * * * * * * * * * ** * * ** * * **
consensus_10732#2 TNCAAATCTTTGT----------------------------------------------- 318
consensus_10732#3 TCAGTGNGT--------------------------------------------------- 308
consensus_10732#0 TCATTGGTGAGACCGACGTGATCTGGTACACCAAGTCAATATACTGTGAGTCTGTTCCAT 639
consensus_10732#1 TGACCACGTTGTTCAAGGGGACTTGT---------------------------------- 331
*
consensus_10732#2 ------------------------------------------------------------
consensus_10732#3 ------------------------------------------------------------
consensus_10732#0 TTTGGAATATTATTATTCATTGTTATTCTTTATTTGAATTTTATATATTGTGACATACTT 699
consensus_10732#1 ------------------------------------------------------------
consensus_10732#2 ------------------------------------------------------------
consensus_10732#3 ------------------------------------------------------------
consensus_10732#0 TTTTCGCGAATTTTTTTTTCTCGGATATATTTTAATTAGACATTTTTCGTTATCTATATT 759
consensus_10732#1 ------------------------------------------------------------
consensus_10732#2 ------------------------------------------------------------
consensus_10732#3 ------------------------------------------------------------
consensus_10732#0 AATATGACGGAACACTCACCCAAGGTTTTTAAGTTAAAGTCTATTCCCCCTATTTCGATT 819
consensus_10732#1 ------------------------------------------------------------
consensus_10732#2 ------------------------------------------------------------
consensus_10732#3 ------------------------------------------------------------
consensus_10732#0 CAGTTAACGCCATTTTTGGCCGACAATATCTAGTCCTGGGTCTGCTATGCAGAAGCCGAT 879
consensus_10732#1 ------------------------------------------------------------
consensus_10732#2 ---------------------
consensus_10732#3 ---------------------
consensus_10732#0 TTTTGCATGCACGGTATCACG 900
consensus_10732#1 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||