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Schistosoma mansoni
cluster # 10733 cluster # 10733       Sequences # 20       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10733#0 length = 1410 sequences # 10  
consensus_10733#1 length = 879 sequences # 4  
consensus_10733#2 length = 843 sequences # 4  
consensus_10733#3 length = 475 sequences # 2  

consensusID : consensus_10733#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1410
fasta sequence
                              [GGCCGATACCACAGGGTTATTACTTTATTCGTATACGGTCTTTCTTTGTCTCCAGCGATATATAAACGTGCTAGTCCAAAATCCGCTAATTTCAGCTGTCCTTTGTTGTTAATCAGGATATTAGAACACTTTATGTCACGATGAAGAAAGTGTCTATCATGACAAAAACTAAGGCCATCCAAGAGCTGCTTCATCAGAGAAGCGATATGCTGTTCACTGAAAGTCACCAATCCAGACTCTAAGATACCATAAAGATCATGATCCATGTAGTCGAAAACTAAGAAGAAAGCACCTTTATCTTTCTTAAAGTCAGTAGGATCGTCCTTGTCTGTAACGATCTCGCATAAATTAACAATGTTAGGGTGTCTGAGTTGGCGAAGTATTTTTATTTCTCGAACAGCAGTTATGGGAAATCCCTCCCTTTCGTTTTCTAGCCTAACTTTTTTCAGTGCTTTGTATTCCCCAGTGATTTTATCTCTCGCTTTATAGACATGGCCGTACGTCCCTTCACCAACTTGAATTAGTGTGTCAAAAGCCGTCACAGAACGCTCTCCCCATGTCTTATTATTACGACTTTTACTTCTAAGTGCGCAGATCTTGGGACGTTTAGTTATCCTTTGCCTGCTGGCAGGTTTCACTGTCGACCCAGGGACGGAATGCTTTGGTGACTTATTAGGAAAGATAGTATCTAGGTTTGAGCTGTCAAAGCCAGGAGGCAGCGGGAGTTCCGTGATAGACGG-TTTTTTATCTTCACACGGAGTCTCCGTAGGCAGAGGTAATTGGTGTGTTTTTAATAACTTATTTGTTTGTGGCAAATCTGTCCTATGAGAATCTTTTACGGTGGAATCCGGATTGGAATCTCGCATGGCAGTTCCCTTA-GACAGTGGTGTGCTGACTGAGGAGGTAACCAAGCTTGACAACTTTCTACTTGGCTCTGGTGGCANAGCTATTTCATCTAATGGGATTAGGGAGGACTCAGATTTAGGAGCTTCGAAACACTTCACATTTGATTGTTTTGAATCACGTTCGGTGGATACTGGGCAAACGTCTTCGGCTTCGTGTGTCCCA-TGAACGTTTTGAGCCTTTAAAATTTTCTCCCTAAAGTTGTGATGTTTTGATAACTCTGACATAAGACTGGATCGGAACTTGAAGGAACTGATATCCGTACATTCCGGAGAGTGACGCCTAGAAACAGGAACTTTCCTGCCACTGCTATGACTGCGTGAACGCTTTTTGTGCTTTTTCTTTCTAAAACAAATTCTTGTTTGGAAAAAATAATCGACATCAAACCTTTTAGGAGCATCATTAGGGGAGACTTCAGGTGACCAGTCACTTGTCCTTTTGTGCTTGTGACTAGAATATTTAGATGAATGGTTTCCATGTTCCTTCGAGTGGTGAGAATGTTTTTTG]

[-] EMBL CD201176             [GGCCGATACCACAGGGTTATTACTTTATTCGTATACGGTCTTTCTTTGTCTCCAGCGATATATAAACGTGCTAGTCCAAAATCCGCTAATTTCAGCTGTCCTTTGTTGTTAATCAGGATATTAGAACACTTTATGTCACGATGAAGAAAGTGTCTATCATGACAAAAACTAAGGCCATCCAAGAGCTGCTTCATCAGAGAAGCGATATGCTGTTCACTGAAAGTCACCAATCCAGACTCTAAGATACCATAAAGATCATGATCCATGTAGTCGAAAACTAAGAAGAAAGCACCTTTATCTTTCTTAAAGTCAGTAGGATCGTCCTTGTCTGTAACGATCTCGCATAAATTAACAATGTTAGGGTGTCTGAGTTGGCGAAGTATTTTTATTTCTCGAACAGCAGTTATGGGAAATCCCTCCCTTTCGTTCTCTAACCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD129365             [                                                                                                                            AACACTTTATGTCACGATGAAGAAAGTGTCTATCATGACAAAAACTAAGGCCATCCAAGAGCTGCTTCATCAGAGAAGCGATATGCTGTTCACTGAAAGTCACCAATCCAGACTCTAAGATACCATAAAGATCATGATCCATGTAGTCGAAAACTAAGAAGAAAGCACCTTTATCTTTCTTAAAGTCAGTAGGATCGTCCTTGTCTGTAACGATCTCGCATAAATTAACAATGTTAGGGTGTCTGAGTTGGCGAAGTATTTTTATTTCTCAAACAGCAGTTATGGGAAATCCCTCCCTTTCGTTTTCTAGCCTAACTTTTTTCAGTGCTTTGTATTCCCCAGTGATTTTATCTCTCGCTTTATAGACATGGCCGTACGTCCCTTCACCAACTTGAATTAGTGTGTCAAAAGCCGTCACAGAACGCTCTCCCCATGTCTTATTATTACGACTTTTACTTCTAAGTGCGCAGATCTTGGGACGTTTAGTTATCCTTTGCCTGCTGGCAGGTTTCACTGTCGACCCAGGGACGGAATGCTTTGGTGACTTATTAGGAAAGATAGTATCTAGGTTTGAGCTGTCAAAGCCAGGAGGCAGCGGGAGTTCCGTGATAGACGG TTNTTTATCTTCACACGGAGTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD150093             [                                                                                                                                                                                                                                                                                      TAAGAAGAAAGCACCTTTATCTTTCTTAAAGTCAGTAGGATCGTCCTTGTCTGTAACGATCTCGCATAAATTAACAATGTTAGGGTGTCTGAGTTGGCGAAGTATTTTTATTTCTCGAACAGCAGTTATGGGAAATCCCTCCCTTTCGTTTTCTAGCCTAACTTTTTTCAGTGCTTTGTATTCCCCAGTGATCTTATCTCTCGCTTTATAGACATGGCCGTACGTCCCTTCACCAACTTGAATTAGTGTGTCAAAAGCCGTCACAGAACGCTCTCCCCATGTCTTATTATTACGACTTTTACTTCTAAGTGCGCAGATCTCGGGACGTTTAGTTATCCTTTGCCTGCTGGCAGGTTTCACTGTCGACCCAGGGACGGAATGCTTTGGTGACTTATTAGGAAAGATAGTATCTAGGTTTGAGCTGTCAAAGCCAGGAGGCAGCGGGAGTTCCGTGATAGACGG TCTTTTATCTTCACACGGAGTCTCCGTAGGCAGAGGTAATTGGTGTGTTTTTAATAACTTATTTGTTTGTGGCAAATCTGTCCTATGAGAATCTTTTACGGTGGAATCCGNATTGGAATCTCGCATGGCAGTTCCCTTANNACAGT GTGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD116000             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCCCTTCACCAACTTGAATTAGTGTGTCAAAAGCCGTCACAGAACGCTCTCCCCATGTCTTATTATTACGACTTTTACTTCTAAGTGCGCAGATCTTGGGACGTTTAGTTATCCTTTGCCTGCTGGCAGGTTTCACTGTCGACCCAGGGACGGAATGCTTTGGTGACTTATTAGGAAAGATAGTATCTAGGTTTGAGCTGTCAAAGCCAGGAGGCAGCGGGAGTTCCGTGATAGACGGTTTTTTTATCTTCACACGGAGTCTCCGTAGGCAGAGGTAATTGGTGTGTTTTTAATAACTTATTTGTTTGTGGCAAATCTGTCCTATGAGAATCTTTTACGGTGGAATCCGGATTGGAATCTCGCATGGCAGTTCCCTTA GACAGTGGTGTGCTGACTGAGGAGGTAACCAAGCTTGACAACTTTCTACTTGGCTCTGGTGGCANAGCTATTTCATCTAATGGGATTAGGGAGGACTCAGATTTAGGAGCTTCG AACACTCCACATTTGATTGTTTTGAATCACGTTCGGTGGATACTGAGACAACGTCTTCGGCTTCGTGTGT                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD148480             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCTCCCCATGTCTTATTATTACGACTTTTACTTCTAAGTGCGCAGATCTTGGGACGTTTAGTTATCCTTTGCCTGCTGGCAGGTTTCACTGTCGACCCAGGGACGGAATGCTTTGGTGACTTATTAGGAAAGATAGTATCTAGGTTTGAGCTGTCAAAGCCAGGAGGCAGCGGGAGTTCCGTGATACACGG TTTTTTATCTTCACACGGAGTCTCCGTAGGCAGAGGTAATTGGTGTG TTTTAATACCTTATTTGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD149948             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGCTGTCAAAGCCAGGAGGCAGCGGGAGTTCCGTGATAGACGG TTTTTTATCTTCACACGGAGTCTCCGTAGGCAGAGGTAATTGGTGTGTTTTTAATAACTTATTTGTTTGTGGCAAATCTGTCCTATGAGAATCTTTTACGGTGGAATCCGGATTGGAATCTCGCATGGCAGTTCCCTTA GACAGTGGTGTGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD093440             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAAAGCTATTTCATCTAATGGGATTAGGGAGGACTCAGATTTAGGAGCTTCGAAACACTTCACATTTGATTCTTTTGAATCACGTTCGGTGGATACTGGGCAAACGTCTTCGGCTTCGTGTGTCCCACTGAACGTTTTGAGCCTTTAAAATTTTCTCCCTAAAGTTGTGATGTTTTGATAACTCTGACATAAGACTGGATCGGAACTTGAAGGAACTGATATCCGTACATTCCGGAGAGTGACGCCTAGAAACAGGAACTTTCCTGCCACTGCTATGACTGCGTGAACGCTTTTTGTGCTTTTTCTTTCTAAAACAAATTCTTGTTTGGAAAAAATAATCGACATCAAACCTTTTAGGAGCATCATTAGGGGAGACTTCAGGTGACCAGTCACTTGTCCTTTTGTGCTTGTGACTAGAATATTTAGATGAATGGTTTCCATGTTCCTTCGAGTGGTGAGAATGTTTTTTG]
[+] EMBL CD093410             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGCTATTTCATCTAATGGGATTAGGGAGGACTCAGATTTAGGAGCTTCGAAACACTTCACATTTGATTGTTTTGAATCACGTTCGGTGGATACTGGGCAAACGTCTTCGGCTTCGTGTGTCCCA TGAACGTTTTGAGCCTTTAAAATTTTCTCCCTAAAGTTGTGATGTTTTGATAACTCTGACATAAGACTGGATCGGAACTTGAAGGAACTGATATCCGTACATTCCGGAGAGTGACGCCTAGAAACAGGAACTTTCCTGCCACTGCTATGACTGCGTGTACGCTTTTTGTGCTTTTTCTTTCTAAAACAAATTCTTGTTTGGAAAAAATAATCGACATCAAACCTTTTAGGAGCATCATTAGGGGAGACTTCAGGTGACCAGTCACTTGTCCTTTTGTGCTTGTGACTAGAATATTTAGATGAATGGTTTCCATGTTCCTTCGAGTGGTGAGAATGTTcctt ]
[+] EMBL CD093444             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGCTATTTCATCTAATGGGATTAGGGAGGACTCAGATTTAGGAGCTTCGAAACACTTCACATTTGATTGTTTTGAATCACGTTCGGTGGATACTGGGCAAACGTCTTCGGCTTCGTGTGTCCCA TGAACGTTTTGAGCCTTTAAAATTTTCTCCCTAAAGTTGTGATGTTTTGATAACTCTGACATAAGACTGGATCGGAACTTGAAGGAACTGATATCCGTACATTCCGGAGAGTGACGCCTAGAAACAGGAACTTTCCTGCCACTGCTATGACTGCGTGAACGCTTTTTGTGCTTTTTCTTTCTAAAACAAATTCTTGTTTGGAAAAAATAATCGACATCAAACCTTTTAGGAGCATCATTAGGGGAGACTTCAGGTGACCAGTCACTTGTCCTTTTGTGCTTGTGACTAGAATATCTAGATGAATGGTTTCCATGTTCCTTCGAGTGGTGAGAATGTTTctc ]
[-] EMBL CD093400             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCTATTTCATCTAATGGGATTAGGGAGGACTCAGATTTAGGAGCTTCGAAACACTTCACATTTGATTGTTTTGAATCACGTTCGGTGGATACTGGGCAAACGTCTTCGGCTTCGTGTGTCCCA TGAACGTTTTGAGCCTTTAAAATTTTCTCCCTAAAGTTGTGATGTTTTGATAACTCTGACATAAGACTGGATCGGAACTTGAAGGAACTGATATCCGTACATTCCGGAGAGTGACGCCTAGAAACAGGAACTTTCCTGCCACTGCTATGACTGCGTGAACGCTTTTTGTGCTTTTTCTTTCTAAAACAAATTCTTGTTTGGAAAAAATAATCGACATCAAACCTTTTAGGAGCATCATTAGGGGAGACTTCAGGTGACCAGTCACTTGTCCTTTTGTGCTTGTGACTAGAATATTTAGATGAATGGTTTCCATGTTCCTTCGAGTGGTGAGAATGTTTTTTG]


>consensus_10733#0 GGCCGATACCACAGGGTTATTACTTTATTCGTATACGGTCTTTCTTTGTCTCCAGCGATA TATAAACGTGCTAGTCCAAAATCCGCTAATTTCAGCTGTCCTTTGTTGTTAATCAGGATA TTAGAACACTTTATGTCACGATGAAGAAAGTGTCTATCATGACAAAAACTAAGGCCATCC AAGAGCTGCTTCATCAGAGAAGCGATATGCTGTTCACTGAAAGTCACCAATCCAGACTCT AAGATACCATAAAGATCATGATCCATGTAGTCGAAAACTAAGAAGAAAGCACCTTTATCT TTCTTAAAGTCAGTAGGATCGTCCTTGTCTGTAACGATCTCGCATAAATTAACAATGTTA GGGTGTCTGAGTTGGCGAAGTATTTTTATTTCTCGAACAGCAGTTATGGGAAATCCCTCC CTTTCGTTTTCTAGCCTAACTTTTTTCAGTGCTTTGTATTCCCCAGTGATTTTATCTCTC GCTTTATAGACATGGCCGTACGTCCCTTCACCAACTTGAATTAGTGTGTCAAAAGCCGTC ACAGAACGCTCTCCCCATGTCTTATTATTACGACTTTTACTTCTAAGTGCGCAGATCTTG GGACGTTTAGTTATCCTTTGCCTGCTGGCAGGTTTCACTGTCGACCCAGGGACGGAATGC TTTGGTGACTTATTAGGAAAGATAGTATCTAGGTTTGAGCTGTCAAAGCCAGGAGGCAGC GGGAGTTCCGTGATAGACGGTTTTTTATCTTCACACGGAGTCTCCGTAGGCAGAGGTAAT TGGTGTGTTTTTAATAACTTATTTGTTTGTGGCAAATCTGTCCTATGAGAATCTTTTACG GTGGAATCCGGATTGGAATCTCGCATGGCAGTTCCCTTAGACAGTGGTGTGCTGACTGAG GAGGTAACCAAGCTTGACAACTTTCTACTTGGCTCTGGTGGCANAGCTATTTCATCTAAT GGGATTAGGGAGGACTCAGATTTAGGAGCTTCGAAACACTTCACATTTGATTGTTTTGAA TCACGTTCGGTGGATACTGGGCAAACGTCTTCGGCTTCGTGTGTCCCATGAACGTTTTGA GCCTTTAAAATTTTCTCCCTAAAGTTGTGATGTTTTGATAACTCTGACATAAGACTGGAT CGGAACTTGAAGGAACTGATATCCGTACATTCCGGAGAGTGACGCCTAGAAACAGGAACT TTCCTGCCACTGCTATGACTGCGTGAACGCTTTTTGTGCTTTTTCTTTCTAAAACAAATT CTTGTTTGGAAAAAATAATCGACATCAAACCTTTTAGGAGCATCATTAGGGGAGACTTCA GGTGACCAGTCACTTGTCCTTTTGTGCTTGTGACTAGAATATTTAGATGAATGGTTTCCA TGTTCCTTCGAGTGGTGAGAATGTTTTTTG



consensusID : consensus_10733#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 879
fasta sequence
                              [CTCGNAGCCAAGATTCGGCACGAGGGCGGATTTTGGACTAGCACGTTTATATATCGCTGGAGACAAAGAAAGACCGTATACGAATAAAGTAATAACCCTGTGGTATCGACCTCCAGAATTACTCCTTGGTGAAGAAAGATATGGCCCAGCCGTTGACATATGGTCTTGCGGGTAAGGATAATAGTGTCACCGTTTTTATATCTCTAAGGTGCATATTAGGAGAAATGTTCACTCGTCGACCAATGTTTCAGGCTAGCGAAGAAGTTGAACAATTAGAAGTCATATCACGAATCTGTGGGTATCCAGATCCAGCTATATGGCCTAATGTTGAAAAATTACCTTTCTACTCGACAATAAAGCCTAAGAAGATGTACAGACGCAGACTCCGGGAAGAATATCACATCATCCCACCACACGCTGTAGATCTCCTTGATCATATGCTCCAATTGGATCCCCAAAAGCGGTGCAGTGCCCGTGAAGCGCTAGCGTCACCGTGGTTACGGAATATTGACCCTACAAAAATTTCCCCACCAAGGTATTTATTATAGAAATATCCCATTCTTCTTAGATTACCTGTTGACCAAGATTGTCATGAAATGTGGAGCAAAAGAAGGCGACGCATGTTGCGGCAGGAGCAGGAAGTAAAGGCTCAGAGAATTAGCCGAGAGACATCCTCTTCCAAGTTCCCAGGTGGGTTATTTTCTTAAGCGTTATTTTTGTAGCTGTCACATCCCGTACTTCCATAGCAGATGCTAATTCTGTTTCAAATGGACCATCTCGAAACCAACTATATTCAACAAGTAGTAGATCTGGATCAGTCAAACAAAGCATTCCAAACAAACTCACTAGCGACGGATTTCGAGACAGTAGTTTCAACAT]

[+] EMBL CD081438             [CTCGNAGCCAAGATTCGGCACGAGGGCGGATTTTGGACTAGCACGTTTATATATCGCTGGAGACAAAGAAAGACCGTATACGAATAAAGTAATAACCCTGTGGTATCGACCTCCAGAATTACTCCTTGGTGAAGAAAGATATGGCCCAGCCGTTGACATATGGTCTTGCGGGTAAGGATAATAGTGTCACCGTTTTTATATCTCTAAGGTGCATATTAGGAGAAATGTTCACTCGTCGACCAATGTTTCAGGCTAGCGAAGAAGTTGAACAATTAGAAGTCATATCACGAATCTGTGGGTATCCAGATCCAGCTATATGGCCTAATGTTGAAAAATTACCTTTCTACTCGACAATAAAGCCTAAGAAGATGTACAGACGCAGACTCCGGGAAGAATATCACATCATCCCACCACACGCTGTAGATCTCCTTGATCATATGCTCCAATTGGATCCCCAAAAGCGGTGCAGTGCCCGTGAAGCGCTAGCGTCACCGTGGTTACGGAATATTGACCCTACAAAAATTTCCCCACCAAGGTATTTATTATAGAAATATCCCATTCTTCTTAGATTACCTGTTGACCAAGATTGTCATGAAATGTGGAGCAAAAGAAGGCGACGCATGTTGCGGCAGGAGCAGGAAGTAAAGGCTCA                                                                                                                                                                                                                                   ]
[-] EMBL CD155576             [                                                                                                                                                                                                                                        TCGTCGACCAATGTTTCAGGCTAGCGAAGAAGTTGAACAATTAGAAGTCATATCACGAATCTGTGGGTATCCAGATCCAGCTATATGGCCTAATGTTGAAAAATTACCTTTCTACTCGACAATAAAGCCTAAGAAGATGTACAGACGCAGACTCCGGGAAGAATATCACATCATCCCACCACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD155607             [                                                                                                                                                                                                                                        TCGTCGACCAATGTTTCAGGCTAGCGAAGAAGTTGAACAATTAGAAGTCATATCACGAATCTGTGGGTATCCAGATCCAGCTATATGGCCTAATGTTGAAAAATTACCTTTCTACTCGACAATAAAGCCTAAGAAGATGTACAGACGCAGACTCCGGGAAGAATATCACATCATCCCACCACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD178596             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCTGTTGACCAAGATTGTCATGAAATGTGGAGCAAAAGAAGGCGACGCATGTTGCGGCAGGAGCAGGAAGTAAAGGCTCAGAGAATTAGCCGAGAGACATCCTCTTCCAAGTTCCCAGGTGGGTTATTTTCTTAAGCGTTATTTTTGTAGCTGTCACATCCCGTACTTCCATAGCAGATGCTAATTCTGTTTCAAATGGACCATCTCGAAACCAACTATATTCAACAAGTAGTAGATCTGGATCAGTCAAACAAAGCATTCCAAACAAACTCACTAGCGACGGATTTCGAGACAGTAGTTTCAACAT]


>consensus_10733#1 CTCGNAGCCAAGATTCGGCACGAGGGCGGATTTTGGACTAGCACGTTTATATATCGCTGG AGACAAAGAAAGACCGTATACGAATAAAGTAATAACCCTGTGGTATCGACCTCCAGAATT ACTCCTTGGTGAAGAAAGATATGGCCCAGCCGTTGACATATGGTCTTGCGGGTAAGGATA ATAGTGTCACCGTTTTTATATCTCTAAGGTGCATATTAGGAGAAATGTTCACTCGTCGAC CAATGTTTCAGGCTAGCGAAGAAGTTGAACAATTAGAAGTCATATCACGAATCTGTGGGT ATCCAGATCCAGCTATATGGCCTAATGTTGAAAAATTACCTTTCTACTCGACAATAAAGC CTAAGAAGATGTACAGACGCAGACTCCGGGAAGAATATCACATCATCCCACCACACGCTG TAGATCTCCTTGATCATATGCTCCAATTGGATCCCCAAAAGCGGTGCAGTGCCCGTGAAG CGCTAGCGTCACCGTGGTTACGGAATATTGACCCTACAAAAATTTCCCCACCAAGGTATT TATTATAGAAATATCCCATTCTTCTTAGATTACCTGTTGACCAAGATTGTCATGAAATGT GGAGCAAAAGAAGGCGACGCATGTTGCGGCAGGAGCAGGAAGTAAAGGCTCAGAGAATTA GCCGAGAGACATCCTCTTCCAAGTTCCCAGGTGGGTTATTTTCTTAAGCGTTATTTTTGT AGCTGTCACATCCCGTACTTCCATAGCAGATGCTAATTCTGTTTCAAATGGACCATCTCG AAACCAACTATATTCAACAAGTAGTAGATCTGGATCAGTCAAACAAAGCATTCCAAACAA ACTCACTAGCGACGGATTTCGAGACAGTAGTTTCAACAT



consensusID : consensus_10733#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 843
fasta sequence
                              [AGCAGGAAGTAAAGGCTCAGAGAATTAGCCGAGAGACATCCTCTTCCAAGTTCCCAGCTGTCACATCCCGTATTTCCATAGCAGATGCTAATTCTGTTTCAAATGGACCATCTCGAAACCAACTATATTCAACAAGTAGTAGATCTGGATCAGTCAAACAAAGCATTCCAAACAAACTCACTAGCGACGGATTTCGAGACAGTAGTTTCAACATGACACAACTCCGCCATCCTCAAATTTCTACTGATCCCACCGATTCCACTACTAATCTTAAGAATCAGCTAAGAGACTTATTGGCAGATTTCGCAGATTCTGGAATAGACCGTTTTAAAGAATCTATCACTGAAGCACTGAAAGCAAATCCTAATTTATTAAAAGGAATGCAAGAATTACTTGGTCCTAGTGATCCAAGTGAAAATGCCTCTGCTGTTCTTGCGTATATTTTATCGTTGTTGGCAGATTTAAGTAGTCAGAGCTCAACTGCTATGGAAATGAGTGATGCAAGTATCCAAACGGCATCTTCACAGATCCATCCTCAACATTTGCCACGTGACTCAAATAGTCGGTTAACCTAGTATTACTGCTACTGCCGCCACTACAGCTCTTTTTAAGGATTCCAGTATTTTGTGGTGTGAAAGTTCAACTATTGTGTGCATTATACATATATTTCAATTTTGTTGTATCTAAACTGTAAAAAATGAAATGCTTTATTGTTTTGTCCTGTTTATTTAAACGATGTGCTATTTTTAGACAGATAATGTAGATATAAAAACAGAAACTTGTGATAGACATTACTCGGAACTTAATTTTATACTGATAAATTTTCGACCCAAAAATACATGT]

[-] EMBL BG932495             [AGCAGGAAGTAAAGGCTCAGAGAATTAGCCGAGAGACATCCTCTTCCAAGTTCCCAGCTGTCACATCCCGTATTTCCATAGCAGATGCTAATTCTGTTTCAAATGGACCATCTCGAAACCAACTATATTCAACAAGTAGTAGATCTGGATCAGTCAAACAAAGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD095993             [             GGCTCAGAGAATTAGCCGAGAGACATCCTCTTCCAAGTTCCCAGCTGTCACATCCCGTATTTCCATAGCAGATGCTAATTCTGTTTCAAATGGACCATCTCGAAACCAACTATATTCAACAAGTAGTAGATCTGGATCAGTCAAACAAAGCATTCCAAACAAACTCACTAGCGACGGATTTCGAGACAGTAGTTTCAACATGACACAACTCCGCCATCCTCAAATTTCTACTGATCCCACCGATTCCACTACTAATCTTAAGAATCAGCTAAGAGACTTATTGGCAGATTTCGCAGATTCTGGAATAGACCGTTTTAAAGAATCTATCACTGAAGCACTGAAAGCAAATCCTAATTTATTAAAAGGAATGCAAGAATTACTTGGTCCTAGTGATCCAAGTGAAAATGCCTCTGCTGTTCTTGCGTATATTTTATCGTTGTTGGCAGATTTAAGTAGTCAGAGCTCAACTGCTATGGAAATGAGTGATGCAAGTATCCAAACGGCATCTT                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD137876             [                                                                                                            CATCTCGAAACCAACTATATTCAACAAGTAGTAGATCTGGATCAGTCAAACAAAGCATTCCAAACAAACTCACTAGCGACGGATTTCGAGACAGTAGTTTCAACATGACACAACTCCGCCATCCTCAAATTTCTACTGATCCCACCGATTCCACTACTAATCTTAAGAATCAGCTAAGAGACTTATTGGCAGATTTCGCAGATTCTGGAATAGACCGTTTTAAAGAATCTATCACTGAAGCACTGAAAGCAAATCCTAATTTATTAAAAGGAATGCAAGAATTACTTGGTCCTAGTGATCCAAGTGAAAATGCCTCTGCTGTTCTTGCGTATATTTTATCGTTGTTGGCAGATTTAAGTAGTCAGAG                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD075264             [                                                                                                                                                                                                                                                                                                       GGCAGATTTCGCAGATTCTGGAATAGACCGTTTTAAAGAATCTATCACTGAAGCACTGAAAGCAAATCCTAATTTATTAAAAGGAATGCAAGAATTACTTGGTCCTAGTGATCCAAGTGAAAATGCCTCTGCTGTTCTTGCGTATATTTTATCGTTGTTGGCAGATTTAAGTAGTCAGAGCTCAACTGCTATGGAAATGAGTGATGCAAGTATCCAAACGGCATCTTCACAGATCCATCCTCAACATTTGCCACGTGACTCAAATAGTCGGTTAACCTAGTATTACTGCTACTGCCGCCACTACAGCTCTTTTTAAGGATTCCAGTATTTTGTGGTGTGAAAGTTCAACTATTGTGTGCATTATACATATATTTCAATTTTGTTGTATCTAAACTGTAAAAAATGAAATGCTTTATTGTTTTGTCCTGTTTATTTAAACGATGTGCTATTTTTAGACAGATAATGTAGATATAAAAACAGAAACTTGTGATAGACATTACTCGGAACTTAATTTTATACTGATAAATTTTCGACCCAAAAATACATGT]


>consensus_10733#2 AGCAGGAAGTAAAGGCTCAGAGAATTAGCCGAGAGACATCCTCTTCCAAGTTCCCAGCTG TCACATCCCGTATTTCCATAGCAGATGCTAATTCTGTTTCAAATGGACCATCTCGAAACC AACTATATTCAACAAGTAGTAGATCTGGATCAGTCAAACAAAGCATTCCAAACAAACTCA CTAGCGACGGATTTCGAGACAGTAGTTTCAACATGACACAACTCCGCCATCCTCAAATTT CTACTGATCCCACCGATTCCACTACTAATCTTAAGAATCAGCTAAGAGACTTATTGGCAG ATTTCGCAGATTCTGGAATAGACCGTTTTAAAGAATCTATCACTGAAGCACTGAAAGCAA ATCCTAATTTATTAAAAGGAATGCAAGAATTACTTGGTCCTAGTGATCCAAGTGAAAATG CCTCTGCTGTTCTTGCGTATATTTTATCGTTGTTGGCAGATTTAAGTAGTCAGAGCTCAA CTGCTATGGAAATGAGTGATGCAAGTATCCAAACGGCATCTTCACAGATCCATCCTCAAC ATTTGCCACGTGACTCAAATAGTCGGTTAACCTAGTATTACTGCTACTGCCGCCACTACA GCTCTTTTTAAGGATTCCAGTATTTTGTGGTGTGAAAGTTCAACTATTGTGTGCATTATA CATATATTTCAATTTTGTTGTATCTAAACTGTAAAAAATGAAATGCTTTATTGTTTTGTC CTGTTTATTTAAACGATGTGCTATTTTTAGACAGATAATGTAGATATAAAAACAGAAACT TGTGATAGACATTACTCGGAACTTAATTTTATACTGATAAATTTTCGACCCAAAAATACA TGT



consensusID : consensus_10733#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 475
fasta sequence
                              [TCTCTCGGCTAATTCTCTGAGCCTTTACTTCCTGCTCCTGTCGCAACATGCGTCGCCTTCTTTTGCTCCACATTTCATGACAATCTTGGTCAACAGGTAATCTTGGTGGGGAAATTTTTGTAGGGTCAATATTCCGTAACCACGGTGACGCTAGCGCTTCACGGGCACTGCACCGCTTTTGGGGATCCAATTGGAGCATATGATCAAGGAGATCTACAGCGTGTGGTGGGATGCTAAGCAGGAAATAATAATCATAGTAGTCTTACATGTGATATTCTTCCCGGAGTCTGCGTCTGTACATCTTCTTAGGCTTTATTGTCGAGTAGAAAGGTAATTTTTCAACATTAGGCCATATAGCTGGATCTGGATACCCACAGATTCGTGATATGACTTCTAATTGTTCAACTTCTTCGCTAGCCTGAAACATTGGTCGACGAGTGAACATTTCTCCTAATATGCACCCGCAAGAACATAT]

[+] EMBL CD148129             [TCTCTCGGCTAATTCTCTGAGCCTTTACTTCCTGCTCCTGTCGCAACATGCGTCGCCTTCTTTTGCTCCACATTTCATGACAATCTTGGTCAACAGGTAATCTTGGTGGGGAAATTTTTGTAGGGTCAA                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD184813             [                              CCTGCTCCTGCCGCAACATGCGTCGCCTTCTTTTGCTCCACATTTCATGACAATCTTGGTCAACAGGTAATCTTGGTGGGGAAATTTTTGTAGGGTCAATATTCCGTAACCACGGTGACGCTAGCGCTTCACGGGCACTGCACCGCTTTTGGGGATCCAATTGGAGCATATGATCAAGGAGATCTACAGCGTGTGGTGGGATGCTAAGCAGGAAATAATAATCATAGTAGTCTTACATGTGATATTCTTCCCGGAGTCTGCGTCTGTACATCTTCTTAGGCTTTATTGTCGAGTAGAAAGGTAATTTTTCAACATTAGGCCATATAGCTGGATCTGGATACCCACAGATTCGTGATATGACTTCTAATTGTTCAACTTCTTCGCTAGCCTGAAACATTGGTCGACGAGTGAACATTTCTCCTAATATGCACCCGCAAGAACATAT]


>consensus_10733#3 TCTCTCGGCTAATTCTCTGAGCCTTTACTTCCTGCTCCTGTCGCAACATGCGTCGCCTTC TTTTGCTCCACATTTCATGACAATCTTGGTCAACAGGTAATCTTGGTGGGGAAATTTTTG TAGGGTCAATATTCCGTAACCACGGTGACGCTAGCGCTTCACGGGCACTGCACCGCTTTT GGGGATCCAATTGGAGCATATGATCAAGGAGATCTACAGCGTGTGGTGGGATGCTAAGCA GGAAATAATAATCATAGTAGTCTTACATGTGATATTCTTCCCGGAGTCTGCGTCTGTACA TCTTCTTAGGCTTTATTGTCGAGTAGAAAGGTAATTTTTCAACATTAGGCCATATAGCTG GATCTGGATACCCACAGATTCGTGATATGACTTCTAATTGTTCAACTTCTTCGCTAGCCT GAAACATTGGTCGACGAGTGAACATTTCTCCTAATATGCACCCGCAAGAACATAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10733#1      -------------------------------------------------------CTCGN 5
consensus_10733#2      -----------------------------------------------------AGCAGGA 7
consensus_10733#0      GGCCGATACCACAGGGTTATTACTTTATTCGTATACGGTCTTTCTTTGTCTCCAGCGATA 60
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      AGCCAAGATTC-GGCACGAGGGCGGATT-TTGGACTAGCACGTTTATATATCGCTGGAGA 63
consensus_10733#2      AGTAAAGGCTC-AGAGAATTAGCCGA------GAGACATCCTCTTCCAAGTTCCCAG--- 57
consensus_10733#0      TATAAACGTGCTAGTCCAAAATCCGCTAATTTCAGCTGTCCTTTGTTGTTAATCAGGATA 120
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      CAAAGAAAGACCGTATACGAAT--A--AAGTAATAACCCTGTGGTA---TCGACC--TCC 114
consensus_10733#2      CTGTCACATCCCGTATTTCCAT--AGCAGATGCTAATTCTGTTTCAAA-TGGACCATCTC 114
consensus_10733#0      TTAGAACACTTTATGTCACGATGAAGAAAGTGTCTATCATGACAAAAACTAAGGCCATCC 180
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      AGAATTACTCCTTGGTGAAGAAAGATATGGCCCAGCCGTTGACATATGGTCTTGCGGGTA 174
consensus_10733#2      GAAACCAACTATATTCAACAAGTAGTAGATCTGGATCAGTCAAACAAAGCATTCCAAACA 174
consensus_10733#0      AAGAGCTGCTTCATCAGAGAAGCGATATG--CTGTTCACTGAAAGTCACCAATCCAGACT 238
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      --AGGATAATAGTGTCACCGTTTTTATATCTCT--AAGGTGCATATTAGGAGAAATGTTC 230
consensus_10733#2      --AACTCACTAGCG--ACGGATTTCGAGACAGT--AGTTTCAACATGAC-ACAACTCCGC 227
consensus_10733#0      CTAAGATACCATAAAGATCATGATCCATGTAGTCGAAAACTAAGAAGAAAGCACCTTTAT 298
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      ACTCGTCGACCA-------ATGTTTCAGGCTAGCGAAGAAGTTGAACAA-TTAGAAGTCA 282
consensus_10733#2      CATCCTCAAATT-------TCTACTGATCCCACCGATTCCACTACTAATCTTAAGAATCA 280
consensus_10733#0      CTTTCTTAAAGTCAGTAGGATCGTCCTTGTCTGTAACGATCTCGCATAAATTAACAATGT 358
consensus_10733#3      --------------------------------------------------------TCTC 4
                                                                                   

consensus_10733#1      TATCACGAATCTGTGGGTATCCAGATCCAGCTATATGGCCTAATGTTGAAAAATTACCTT 342
consensus_10733#2      GCTAAGAGACTTATTGGCAGATTTCGCAGATTCTGGAATAGACCGTTTTAAAGA-ATCTA 339
consensus_10733#0      TAGGGTGTCTGAGTTGGCGAAGTATTTTTATTTCTCGAACAGCAGTTATGGGAA-ATCCC 417
consensus_10733#3      TCGGCTAATTCTCTGAGCCTTTACTTCCTGCTCCTGTCGCAACATGCGTCGCC---TTCT 61
                                    *  *              *                            

consensus_10733#1      TCTACTCGACAATAAAGCCTAAGAAGATGTACAGACGCAGACTCCGGGAAGAATAT---- 398
consensus_10733#2      TCACTGAAGCACTGAAAGCAAATCCTAATTTATTAAAAGGAATGCAAGAATTACTT---- 395
consensus_10733#0      TCCCTTTCGTTTTCTAGCCTAACTTTTTTCAGTGCTTTGTATTCCCCAGTGATTTT---- 473
consensus_10733#3      TTTGCTCCACATTTCATGACAATCTTGGTCAACAGGTAATCTTGGTGGGGAAATTTTTGT 121
                       *           *  *    **                    *            *    

consensus_10733#1      --CACATCATCCCACCACACGCTGTAGATCTCCTTGATCATATGCTCCAATTGGATCCCC 456
consensus_10733#2      --GGTCCTAGTGATCCAAGTGAAAATGCCTCTGCTGTTCTTGCGTAT--ATTTTATCGTT 451
consensus_10733#0      --ATCTCTCGCTTTATAGACATGGCCGTACGTCCC-TTCACCAACTTGAATTAGTGTGTC 530
consensus_10733#3      AGGGTCAATATTCCGTAACCACGGTGACGCTAGCGCTTCACGGGCACTGCACCGCTTTTG 181
                                       *                    **                     

consensus_10733#1      AAAAGCGGTGCAGTGCCCGTGAAGCGCTAGCGTCACCGTGGTTACGGAATATTGACCCTA 516
consensus_10733#2      GTTGGCAGATTTAAGTAGTCAGAGCTCAACTGCTATGGAAAT----GAGTGATGCAAGTA 507
consensus_10733#0      AAAAGCCG-TCACAGAACGCTCTCCCCATGTCTTATTATTAC----GACTTTTACTTCTA 585
consensus_10733#3      GGGATCCAATTGGAGCATATGATCAAGGAGATCTACAGCGTG----TGGTGGGATGCTAA 237
                            *        *                   *              *         *

consensus_10733#1      CAAAAATTTCCCCACCAAGGT--ATTTATTATAGAAAT-ATCCCATTCTTCTTAGATTAC 573
consensus_10733#2      TCCAAACGGCATCTTCACAG---ATCCATCCTCAACAT-TTGCCACGTGACTCAAATAGT 563
consensus_10733#0      AGTGCGCAGATCTTGGGACGTTTAGTTATCCTTTGCCTGCTGGCAGGTTTCACTGTCGAC 645
consensus_10733#3      GCAGGAAATAATAATCATAGTAGTCTTACATGTGATATTCTTCCCGGAGTCTGCGTCTGT 297
                                          *       *         *  *  *      *         

consensus_10733#1      CTGTTGACCAAG-ATTGTCATGAAATGTGGAGCAAAAGAAGGCGACGCATGTTGCGGCAG 632
consensus_10733#2      CGGTTAACCTAGTATTACTGCTACTGCCGCCACTACAGCTCTTTTTAAGGATTCCAGTAT 623
consensus_10733#0      CCAGGGACGGAATGCTTTGGTGACT--TATTAGGAAAGATAGTATCTAGGTTTGAGCTGT 703
consensus_10733#3      ACATCTTCTTAG-GCTTTATTGTCG---AGTAGAAAGGTAATTTTTCAACATTAGGCCAT 353
                              *  *    *                  *  *             **       

consensus_10733#1      GAGCAGGAAGTAAAGGCTCAGAGAATTAGC--CGAGAGACATCCTCTTCCAAGTTCCCAG 690
consensus_10733#2      TT-TGTGGTGTGAAAGTTCAACTATTGTGTG-CATTATACATATATTTCAATTTTGTTGT 681
consensus_10733#0      CA-----AAGCCAGGAGGCAGCGGGAGTTC--CGTGATAGACGGTTTTTTATCTTCACAC 756
consensus_10733#3      ATAGCTGGATCTGGATACCCACAGATTCGTGATATGACTTCTAATTGTTCAACTTCTTCG 413
                                         *                 *          *  *  **     

consensus_10733#1      GTGGGTTATTTTCTTAAGCGTTATTTTTGTAGCTGTCACATCCCGTACTTCCATAGCA-- 748
consensus_10733#2      AT---CTAAACTGTAAAAAATGAAATGCTTTATTGTTTTGTCCTGTTTATTTAAACGA-- 736
consensus_10733#0      GGAGTCTCCGTAGGCAGAGGTAATTGGTGTGTTTTTAATAACTTATTTGTTTGTGGCAAA 816
consensus_10733#3      CTAGCCTGAAACATTGGTCGACGAGTGAACATTTCTCCTAA--TATGCACCCGCAAGAA- 470
                             *                          * *         *           *  

consensus_10733#1      --GATGCTAATTCTGTTTCAAATGG-ACCATCTCGAAACCAACT--ATATTCAACAAGTA 803
consensus_10733#2      --TGTGCTATT-----TTTAGACAG-ATAATGTAGATATAAA----AACAGAAACTTGTG 784
consensus_10733#0      TCTGTCCTATGAGAATCTTTTACGGTGGAATCCGGATTGGAATCTCGCATGGCAGTTCCC 876
consensus_10733#3      CATAT------------------------------------------------------- 475
                           *                                                       

consensus_10733#1      GTAGATCTGGATCAGTCAAACAAAGCATT--CCAAACAAACTCACTAGCGACGGATTTCG 861
consensus_10733#2      ATAGACATTACTCGG---AACTTA--ATT--TTATACTGATAAATTTTCGAC----CCAA 833
consensus_10733#0      TTAGACAGTGGTGTGCTGACTGAGGAGGTAACCAAGCTTGACAACTTTCTACTTGGCTCT 936
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      AG----ACAGTAGTTTCAACAT-------------------------------------- 879
consensus_10733#2      AA----ATACATGT---------------------------------------------- 843
consensus_10733#0      GGTGGCANAGCTATTTCATCTAATGGGATTAGGGAGGACTCAGATTTAGGAGCTTCGAAA 996
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      ------------------------------------------------------------
consensus_10733#2      ------------------------------------------------------------
consensus_10733#0      CACTTCACATTTGATTGTTTTGAATCACGTTCGGTGGATACTGGGCAAACGTCTTCGGCT 1056
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      ------------------------------------------------------------
consensus_10733#2      ------------------------------------------------------------
consensus_10733#0      TCGTGTGTCCCATGAACGTTTTGAGCCTTTAAAATTTTCTCCCTAAAGTTGTGATGTTTT 1116
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      ------------------------------------------------------------
consensus_10733#2      ------------------------------------------------------------
consensus_10733#0      GATAACTCTGACATAAGACTGGATCGGAACTTGAAGGAACTGATATCCGTACATTCCGGA 1176
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      ------------------------------------------------------------
consensus_10733#2      ------------------------------------------------------------
consensus_10733#0      GAGTGACGCCTAGAAACAGGAACTTTCCTGCCACTGCTATGACTGCGTGAACGCTTTTTG 1236
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      ------------------------------------------------------------
consensus_10733#2      ------------------------------------------------------------
consensus_10733#0      TGCTTTTTCTTTCTAAAACAAATTCTTGTTTGGAAAAAATAATCGACATCAAACCTTTTA 1296
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      ------------------------------------------------------------
consensus_10733#2      ------------------------------------------------------------
consensus_10733#0      GGAGCATCATTAGGGGAGACTTCAGGTGACCAGTCACTTGTCCTTTTGTGCTTGTGACTA 1356
consensus_10733#3      ------------------------------------------------------------
                                                                                   

consensus_10733#1      ------------------------------------------------------
consensus_10733#2      ------------------------------------------------------
consensus_10733#0      GAATATTTAGATGAATGGTTTCCATGTTCCTTCGAGTGGTGAGAATGTTTTTTG 1410
consensus_10733#3      ------------------------------------------------------
                                                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)