These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 697 fasta sequence [ATTACGTGACCAAATGCACTGAAAACTGATTTCAGTTCATCTGCAGTTGTATCTGGTGGTAAATTAGTAACACGTACAGTATTTTCATCGAATGGACGTTTGTCGGTTGACATACTGGATCCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCGTTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT-TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG-TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA-CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT--TTCCTGT-CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA-GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA] [+] EMBL CD201002 [ATTACGTGACCAAATGCACTGAAAACTGATTTCAGTTCATCTGCAGTTGTATCTGGTGGTAAATTAGTAACACGTACAGTATTTTCATCGAATGGACGTTTGTCGGTTGACATACTGGATCCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCGTTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTNT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTT ] [-] EMBL CD123565 [ GGTGGTAAATTAGTAACACGTACAGTATTTTCATCGAATGGACGTTTGTCGGTTGACATACTGGATCCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCGTTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAG ] [-] EMBL CD156789 [ ATTAGTAACACGTACAGTATTTTCATCGAATGGACGTNTGTCGGTTGACATACTGGATCCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCGTTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTTCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGAGGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTC ] [+] EMBL CD189662 [ AGTAACACGTACAGTATTTTCATCGAATGGACGTTTGTCGGTTGACATACTGGATCCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCGTTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTA ] [-] EMBL CD194093 [ CTGTAGGTTCCGTTNTAGCACGAAGTAGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTGCATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTC ] [+] EMBL CD132107 [ TTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCA ] [+] EMBL CD157742 [ GAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGTCTAAATTTCCA CCAGAGGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAAC ] [+] EMBL CD157696 [ GAAGCAGGGCCTGAAACAATTGCATGTG TTACATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATNTCC ] [+] EMBL CD093756 [ TAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTGTTTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTT CATTTTNNNTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTC ATAGGGAGGC ATTNCGAATCTTCGTTTAACTCATCTGTCCAAGACAC ] [+] EMBL CD164726 [ TAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGG ] [-] EMBL CD187043 [ AAAATGTCCACCTTTACAATAATACCAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTGCTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGT ] [+] EMBL CD157740 [ CGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGTCCCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAA ] [-] EMBL CD158637 [ TGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGT ] [-] EMBL CD157681 [ CTANA TTCCACCCAGAAGGATCAGATTNTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA] [-] EMBL CD157738 [ ATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCA ] [-] EMBL CD157689 [ ATTTCCA CCAGAAGGATCAGATTNTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA] [-] EMBL CD157685 [ TTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA] [-] EMBL CD157638 [ aTTCCACCCAGAAGGATCAGATTNTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAACACACAGTCAAGTTGATCCGTAGAATCA] [-] EMBL CD157622 [ cAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA] [-] EMBL CD157594 [ AAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA] consensusID : consensus_10750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [TCCCGGAAACCGCACGGAGTTGTTCCTGTAACAATTGCATTGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTGTTTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCACCAGAAGGATCATATTTTGAAGCACCAAACTTTCTCTATTTTTTCCTGCCCGCTACTTGAGAAGAAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTNNNAGATGAGGCAATTACGAATCTTCGTATAACTCATCTGTCCAAGACAC] [+] EMBL CD093746 [TCCCGGAAACCGCACGGAGTTGTTCCTGTAACAATTGCATTGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTGTTTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCACCAGAAGGATCATATTTTGAAGCACCAAACTTTCTCTATTTTTTCCTGCCCGCTACTTGAGAAGAAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTNNNAGATGAGGCAATTACGAATCTTCGTATAACTCATCTGTCCAAGACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10750#0 ATTACGTGACCAAATGCACTGAAAACTGATTTCAGTTCATCTGCAGTTGTATCTGGTGGT 60 consensus_10750#1 ------------------------------------------------------------ consensus_10750#0 AAATTAGTAACACGTACAGTATTTTCATCGAATGGACGTTTGTCGGTTGACATACTGGAT 120 consensus_10750#1 ------------------------------------------------------------ consensus_10750#0 CCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCG 180 consensus_10750#1 ------------------------------------------------------------ consensus_10750#0 TTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGT 240 consensus_10750#1 -------------------------------TCCCGGAAACCGCACGGAGTTGTTCCTGT 29 * * ***** ************ consensus_10750#0 AACAATTGCATTGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCT 300 consensus_10750#1 AACAATTGCATTGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCT 89 ************************************************************ consensus_10750#0 TTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCC 360 consensus_10750#1 TTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCC 149 ************************************************************ consensus_10750#0 TGTTTTTTTT-GCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATC 419 consensus_10750#1 TGTTTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATC 209 ********** ************************************************* consensus_10750#0 GGCTGGGTACGTATTGGCTAAATTTCCACCAGAAGGATCAGATTTTGAAGCACCAAACTT 479 consensus_10750#1 GGCTGGGTACGTATTGGCTAAATTTCCACCAGAAGGATCATATTTTGAAGCACCAAACTT 269 **************************************** ******************* consensus_10750#0 TCTCCATTTTTTCCTGTCCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTC 539 consensus_10750#1 TCTCTATTTTTTCCTGCCCGCTACTTGAGAAGAAACAACACGTTTTTCTTTTTGATATTC 329 **** *********** ********** **** *************************** consensus_10750#0 CTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGAT 599 consensus_10750#1 CTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGAT 389 ************************************************************ consensus_10750#0 GTTACGCTCTGGATCGAACTTTTCTTCAATAGGAGGCAATTCCGAATCTTCGTTTAACTC 659 consensus_10750#1 GTTACGCTCTGGATCGAACTTTTCTNNNAGATGAGGCAATTACGAATCTTCGTATAACTC 449 ************************* * * ********* *********** ****** consensus_10750#0 ATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA 697 consensus_10750#1 ATCTGTCCAAGACAC----------------------- 464 *************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||