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Schistosoma mansoni
cluster # 10801 cluster # 10801       Sequences # 22       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10801#0 length = 822 sequences # 19  
consensus_10801#1 length = 507 sequences # 1  
consensus_10801#2 length = 216 sequences # 2  

consensusID : consensus_10801#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 19
consensus length = 822
fasta sequence
                              [ACTTTCCGTTATCAAAACAAGTGAGGGGTTGTGTAAAAGTAATAGGGCGCGTAGTTGAGTCATCTTATTCTGAATAGGTCGGGCATTAATTAACATTAGTGTCAGGAAGGATGAGTGTTTGTCTAATAAAATGGTGTGCTGTAAACCCTGTGGTTTGTCGCTTTTACTATGAGAAGAGGAAAAAGTGGGAGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCATAGTTAACGGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAGAATCGGGTGAGTTAAATGGATAGGCGGTGTATTCGGGGGGTGATCATGTTCCGTCAAGGAGCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA-GAG-ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTTAGAATCGATAGGTGGGTCCCCAAGCAGGCCAACATTATGATTGTCTTGTGTGCAGTGGGGTGTTCTACTCCTATTACGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGACATTGTTGCCGG-GGATGGTGTTCCTGTTGTGTGGGC-T-GT-GCTGATT-CCT-GTAACCTGCATGTTTCAAGCTATATGGCTTATTGGCATCATGTGTAAGTGTGGGT]

[+] EMBL CD131531             [ACTTTCCGTTATCAAAACAAGTGAGGGGTTGTGTAAAAGTAATAGGGCGCGTAGTTGAGTCATCTTATTCTGAATAGGTCGGGCATTAATTAACATTAGTGTCAGGAAGGATGAGTGTTTGTCTAATAAAATGGTGTGCTGTAAACCCTGTGGTTTGTCGCTTTTACTATGAGAAGAGGAAAAAGTGGGGGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCATAGTTAACGGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAGAATCGGGTGAGTTAAATGGATAGGCGGTGTATTCGGGGGGTGATCATGTTCCGCCAAGGAGCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAAGTGGTCTCAGAATAGTGGAATTGTCGCCCTC ACATTTGGAGACCCCATAGCAATACCGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGG                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD178368             [                                                                                                       tGGAAGGATGAGTGCTTGTCTAATAAAATGGTGTGCTGTAAACCCTGTGGTTTGTCGCTTTTACTATGAGAAGAGGAAAAAGTGGGGGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCATAGTTAACGGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAGAATCGGGTGAGTTAAATGGATAGGCGGTGTATTCGGGGGGTGATCATGTTCCGCCAAGGAGCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAAGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGTGGTTTGGTTCTGGTAGTATTTAGAATCGATAGGTGGGTCCCCAAGCAGGTCAACATTATGGTTGCCTTGTGTGCAGTGGGGTGTTCTACTCCTATTACGGGTAGTTAGGGGAGTTGTATGTNTCAAATAATTATTGCATGATTGTCTGACATTGTTGCCGGNGGTTGGTG TACTGTTGTGTGGGC T GT GCTGATT CCT GTAACCTGCATGTTTCAAGCTATATGGCTTATTGGCATCATGTGTAAGTGTGGGT]
[-] EMBL CD167918             [                                                                                                                     TTTGTCTAGTAAAATGGTATGCTGTAAACCCTGTGGTTTGTCGCTTTTACTATGAGAAGAGGAAAAAGTGGGAGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCATAGTTAACGGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAGAATCGGGTGAGTTAAATGGATGGGCGGTGTATTCGGGGGGTGATCATGTTCCGTCAAGGAGCTTTTAAGACTAGAGA AGTTATCGACGGTGAGAAAGGTGTGTCACTCCCCATCAGGTCGGAGTATGTAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTTAGAATCGATAGGTGGGTCCCCAAGCAGGCCAACATTATGATTGTCTTGTGTGCAGTGGGGTGTTCTACTCCTATTACGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGACATTATTGCCGG GGATGGTGTTCCTGTTG                                                                                ]
[+] EMBL CD121711             [                                                                                                                                  ATGGTGTGCTGTAAACCCTGTGGTTTGTCGCTTTTACTATGAGAAGAGGAAAAAGTGGGAGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCATAGTTAACGGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGCAAGAAGTATGTTCACGAGTGTTGGGTAGAATCGGGTGAGTTAAATGGATAGGCGGTGTATTCGGGGGGTGATCATGTTCCGTCAAGGAGCTTTTAAGACTAGGGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTTAGAATCGATA                                                                                                                                                                                                                                    ]
[-] EMBL CD064944             [                                                                                                                                                          TTGTCGCTTTTGCTATGAGAAGAGGAAAAAGTGGGAGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCATAGTTAACGGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAGAATCGGGTGAGTTAAATGGATAGGCGGTGTATTCGGGGGGTGATCATGCTCCGTCAAGGAGCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAGGTGGT                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD127918             [                                                                                                                                                              CGCTTTCACTATGAGAAGAGGAAAAAGTGGGAGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCATAGTTAACGGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAGAATCGGGTGAGTTAAATGGATAGGCGGTGTATTCGGGGGGTGATCATGTTCCGTGAAGGAGCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGACCAGCATAAAAAAGGATCAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTATGGTAGTATTTAGAATCGATAGGTGGGTCCCCAAGCAGGCCAACATTA                                                                                                                                                                                                         ]
[-] EMBL CD127859             [                                                                                                                                                                                                                                                                 AGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAGAATCGGGTGAGTTAAATGGATAGGCGGTGTATTCGGGGGGTGATCATGTTCCGTGAAGGAGCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTTAGGATCGATAGGTGGGTCCCCAAGCAGGCCAACATTATGATTGTCTTGTGTGCAGTGGGGTGTTCTACTCCTATTACGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGACATTGTTGCCGG GGATGGTGTTCCTGTTGTGTGGGCNT GA GATGA                                                              ]
[-] EMBL CD168019             [                                                                                                                                                                                                                                                                            GCGAAAGAAGTATGTTCACGAGTGTTGGGTAGAATCGGGTGAGTTAAATGGATAGGCGGTGTATTCGGGGGGTGATCATGTTCCGTCAAGGAGCTTTTAAGACTAGAGGCAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAACGTGGTCTCAGAATAGTGGAATTATCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGCTTTGGTAGTATTTAGAATCGTTAGGTGGGTCtc                                                                                                                                                                                                                          ]
[+] EMBL CD127722             [                                                                                                                                                                                                                                                                            cgtttgtAAGTATGTTCACGAGTGTTGGGTAGAATCGGGTGAGTTAAATGGATAGGCGGTGTATTCGGGGGGTGATCATGTTCCGTGAAGGAGCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTTAGAATCGATAGGTGGGTCCCCAAGCAGGCCAACATTATGATTGTCTTGTGTGCAGTGGGGTGTTCTACTCCTATTACGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGACATTGTTGCCGG GGATGGTGTTCCTGTTGTGTGGGC T GT GCT                                                                ]
[+] EMBL CD127247             [                                                                                                                                                                                                                                                                                                                             caATAGTAGGTGTATTCGGGGGGTGATCATGTTCCGTCAAGNAGCTTTCCAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTTAGAATCGATAGGTGGGTCCCCAAGCAGGCCAACATTATGATTGTCTTGTGTGCAGTGGGGTGTTCTACTCCTATTACGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGACATTGTTGCCGG GGATGGTGTTCCTGTTGTGTGGGC T GT GCT                                                                ]
[+] EMBL CD127758             [                                                                                                                                                                                                                                                                                                                               ATATGTGGTGTATTCGGGGGGTGATCATGTTCCGTGAAGGAGCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTTAGAATCGATAGGTGGGTCCCCAAGCAGGCCAACATTATGATTGTCTTGTGTGCAGTGGGGTGTTCTACTCCTATTACGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGACATTGTTGCCGG GGATGGTGTTCCTGTTGTGTGGGC T GT GCT                                                                ]
[+] EMBL CD127585             [                                                                                                                                                                                                                                                                                                                                            TCGGGGTGTGATCATGTTCCGTGAAGGAGCTCTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTTAAAATCGATAGGTGGGTCCCCAAGCAGGCCAACATTATGATTGTCTTGTGTGCAGTGGGGTGTTCTACTCCTATTACGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGACATTGTTGCCGG GGATGGTGTTCCTGTTGTGTGGGC T GT GCT                                                                ]
[-] EMBL CD127097             [                                                                                                                                                                                                                                                                                                                                               GGGGGTGATCATGTTCCGTGAAGGAGCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTAAGAATCGATAGGTGGGTCCCCAAGCAGGCCAACATTATGATTGTCTTGTGTGCAGTGGGGa                                                                                                                                                                                 ]
[-] EMBL CD127690             [                                                                                                                                                                                                                                                                                                                                                  GGTGATCATGTTCCGTGAAGGAGCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAGAGATGTGTCACTCCCCATCAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTTAGAATCGATAGGTGGGTCCCCAAGCAGGCCAACATTATGATTGTCTTGTGTGCAGTGGGGTGTTCTACTCCTATTACGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGACATTGTTGCCGG GGATGGTGTTCCTGTTGTGTGGGC TAGTAACTGATTCCCTGGTAACC                                                 ]
[-] EMBL BG931184             [                                                                                                                                                                                                                                                                                                                                                                                                                             TCAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGGGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGACTTATAAAGGGTGGTTTGGTTCCGGTAGTATTTAGAATCGGTAGGTGGGac                                                                                                                                                                                                                            ]
[+] EMBL CD194992             [                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAAGGGACATCAGAGAGTTATAAAGGGt                                                                                                                                                                                                                                                                   ]
[-] EMBL CD090523             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tctctCCCCATAGCAATACTGTTGAGGGGGAGA GAG ATAAAAAAGGATGAGGTGGTGTGTGTGCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGTGGTTTGGACCTGGTAGTATTTAGAATCGATAGGTGGGTCCTCAAGCAGGCCAACATTATGGTT                                                                                                                                                                                                    ]
[+] EMBL CD168169             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AATCGATAGGTGGGTCCCCAAGTAGGCCAACATTATGGTTACCTTGTGTGCAGCGGGGTGTTCTACTTCTATTACAGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCCGACATTGTTGCCG                                                                                                   ]
[-] EMBL CD062710             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCCCC ATCAGGCCAACATTATGGTTGTCTTGTGTGCAGTGGGGTGTTCTACTCCTGTTACGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCAGAC   GTTGCCGG GGGTGGTGTTCCTGTTGTGTGGGC T GT GCT ATT CCcgataga                                                  ]


>consensus_10801#0 ACTTTCCGTTATCAAAACAAGTGAGGGGTTGTGTAAAAGTAATAGGGCGCGTAGTTGAGT CATCTTATTCTGAATAGGTCGGGCATTAATTAACATTAGTGTCAGGAAGGATGAGTGTTT GTCTAATAAAATGGTGTGCTGTAAACCCTGTGGTTTGTCGCTTTTACTATGAGAAGAGGA AAAAGTGGGAGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCATAGTTAAC GGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAG AATCGGGTGAGTTAAATGGATAGGCGGTGTATTCGGGGGGTGATCATGTTCCGTCAAGGA GCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCATCAGGTC GGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGGAGACCC CATAGCAATACTGTTGAGGGGGAGAGAGATAAAAAAGGATGAGGTGGTGTGTGTGCCAAA TTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTTAGAATCGATA GGTGGGTCCCCAAGCAGGCCAACATTATGATTGTCTTGTGTGCAGTGGGGTGTTCTACTC CTATTACGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGACA TTGTTGCCGGGGATGGTGTTCCTGTTGTGTGGGCTGTGCTGATTCCTGTAACCTGCATGT TTCAAGCTATATGGCTTATTGGCATCATGTGTAAGTGTGGGT



consensusID : consensus_10801#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence
                              [TGTCTAATAAAATGGTGTGCTGTAAACCCTGTGGTTTGTCGCTTTTACTATGAGAAGAGGAAAAAGTGGGAGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCGTAGTTAACGGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGGCATTGTTGCCGGGGGTGGTGTTCCTGTTGTGTGGGCTGTGCTGATTCCTGTAACCTGCATGTTTCAAGCTATATGGCTTATTGGCATCATGTGTAAGTGTGGTTTTTGTCGGGCGTAACCTCACGTTAGGATATGGGGGTACTGCCAGTTCATTATGCTTGTTGTAATGCATTCGACTACTATGAGTAGGTGCATGTTGTGTATTGAGAGATCTGGAGTACTTATGGGTGTTTAGAGAGAATTTAGTATTATTTCGCATTACAGTGTTTGGGCGGTTATAG]

[+] EMBL CD178599             [TGTCTAATAAAATGGTGTGCTGTAAACCCTGTGGTTTGTCGCTTTTACTATGAGAAGAGGAAAAAGTGGGAGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCGTAGTTAACGGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGGCATTGTTGCCGGGGGTGGTGTTCCTGTTGTGTGGGCTGTGCTGATTCCTGTAACCTGCATGTTTCAAGCTATATGGCTTATTGGCATCATGTGTAAGTGTGGTTTTTGTCGGGCGTAACCTCACGTTAGGATATGGGGGTACTGCCAGTTCATTATGCTTGTTGTAATGCATTCGACTACTATGAGTAGGTGCATGTTGTGTATTGAGAGATCTGGAGTACTTATGGGTGTTTAGAGAGAATTTAGTATTATTTCGCATTACAGTGTTTGGGCGGTTATAG]


>consensus_10801#1 TGTCTAATAAAATGGTGTGCTGTAAACCCTGTGGTTTGTCGCTTTTACTATGAGAAGAGG AAAAAGTGGGAGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCGTAGTTAA CGGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTA GTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGTCTGGCATTGTTGCCGGGG GTGGTGTTCCTGTTGTGTGGGCTGTGCTGATTCCTGTAACCTGCATGTTTCAAGCTATAT GGCTTATTGGCATCATGTGTAAGTGTGGTTTTTGTCGGGCGTAACCTCACGTTAGGATAT GGGGGTACTGCCAGTTCATTATGCTTGTTGTAATGCATTCGACTACTATGAGTAGGTGCA TGTTGTGTATTGAGAGATCTGGAGTACTTATGGGTGTTTAGAGAGAATTTAGTATTATTT CGCATTACAGTGTTTGGGCGGTTATAG



consensusID : consensus_10801#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 216
fasta sequence
                              [ATACTGCTACTAGTCCTAAGAACAAGACTAAACACCAGGCAGCTGTAACCATTCACCCTAAATCCAAACACTCAACTACAACAAAATGCCCACCCACCTATGCATCTACAGTTTCAAAGCACTCTTCTTGTGTCTCCAATGAAAAGACACAACCCAAGCCTCACATCAATCGCTCTAATAGCTATAACCGCCCAAACATTGCAAGGGGAAATAATA]

[+] EMBL CD193322             [ATACTGCTACTAGTCCTAAGAACAAGACTAAACACCAGGCAGCTGTAACCATTCACCCTAAATCCAAACACTCAACTACAACAAAATGCCCACCCACCTATGCATCTACAGTTTCAAAGCACTCTTCTTGTGTCTCCAATGAAAAGACACAACCCAAGCCTCACATCAATCGCTCTAATAGCTATAACCGCCCAAACATTGCAAGGGGAAATAATA]
[+] EMBL CD193320             [ATACTGCTACTAGTCCGGGGAAAAAAATTAAACACCAGGCAGTTGTAACCATTCACCCTAAATCCAAACACTCAACTACAACAAAATGCCCACCCACCTATGCATCTACAGTTTCAAAGCACTCTTCTTGTGTCTCCAATGAAAAGACAAAACCCAAGCCTCACATCAATCGCTCTAATAGCTATAACCGCCCAAACACTGTAATGCGAAATAAT ]


>consensus_10801#2 ATACTGCTACTAGTCCTAAGAACAAGACTAAACACCAGGCAGCTGTAACCATTCACCCTA AATCCAAACACTCAACTACAACAAAATGCCCACCCACCTATGCATCTACAGTTTCAAAGC ACTCTTCTTGTGTCTCCAATGAAAAGACACAACCCAAGCCTCACATCAATCGCTCTAATA GCTATAACCGCCCAAACATTGCAAGGGGAAATAATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10801#0      ACTTTCCGTTATCAAAACAAGTGAGGGGTTGTGTAAAAGTAATAGGGCGCGTAGTTGAGT 60
consensus_10801#1      ------------------------------------------------------------
consensus_10801#2      ------------------------------------------------------------
                                                                                   

consensus_10801#0      CATCTTATTCTGAATAGGTCGGGCATTAATTAACATTAGTGTCAGGAAGGATGAGTGTTT 120
consensus_10801#1      -----------------------------------------------------------T 1
consensus_10801#2      ------------------------------------------------------------
                                                                                   

consensus_10801#0      GTCTAATAAAATGGTGTGCTGTAAACCCTGTGGTTTGTCGCTTTTACTATGAGAAGAGGA 180
consensus_10801#1      GTCTAATAAAATGGTGTGCTGTAAACCCTGTGGTTTGTCGCTTTTACTATGAGAAGAGGA 61
consensus_10801#2      -------------------------------------------ATACTGCTACTAGTCCT 17
                                                                   ****   *  **    

consensus_10801#0      AAAAGTGGGAGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCATAGTTAAC 240
consensus_10801#1      AAAAGTGGGAGTATTGGCTCTACGTTCTTGTTTGTTTAGTTTAATACCAGCGTAGTTAAC 121
consensus_10801#2      AAGAACAAGACTAAACACCAGGCAGCTGTAACCATTCACCCTAAATCCAA-ACACTCAAC 76
                       ** *    ** **    *    *     *     ** *   ***  ***    * * ***

consensus_10801#0      GGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAG 300
consensus_10801#1      GGGAGAAAGGTGGTCGGAGGTTAGTTTGGCGAAAGAAGTATGTTCACGAGTGTTGGGTAG 181
consensus_10801#2      TACAACAAAATGCCCACCCACCTATGCATCTACAGTTTCAAAG-CACTCTTCTTGTGTCT 135
                          *  **  **  *         *    * * **    *    ***   * *** **  

consensus_10801#0      AATCGGGTGAGTTAAATGGATAGGCGGTGTATTCGGGGGGTGATCATGTTCCGTCAAGGA 360
consensus_10801#1      --TTAGGGGAGTTGTATGTTTCAAATAATTATT----GCATGATTGTCT--------GGC 227
consensus_10801#2      CCAATGAAAAGACACA-ACCCAAGCCTCACATCAATCGCTCTAATAGCTATAACCGCCCA 194
                            *   **    *              **     *    *     *           

consensus_10801#0      GCTTTTAAGACTAGAGACAGTTATCGACGGTGAGAAAGATGTGTCACTCCCCAT------ 414
consensus_10801#1      ATTGTTG---CCGGGGGTGGTGTTCC-TGTTGTGTGGGCTGTGCTGATTCCTGTAACCTG 283
consensus_10801#2      AACATTG---CAAGGGGAAATAATA----------------------------------- 216
                           **    *  * *    *  *                                    

consensus_10801#0      CAGGTCGGAGTATATAGAAGGTGGTCTCAGAATAGTGGAATTGTCGCCCTCAACATTTGG 474
consensus_10801#1      CATGTTTCAAGCTATATGGCTTATTGGCATCAT-GTGTAAGTGTGGTTTTTGTCGGGCGT 342
consensus_10801#2      ------------------------------------------------------------
                                                                                   

consensus_10801#0      AGACCCCATAGCAATACTGTTGAGGGGGAGAGAGATAAAAAAGGATGAGGTGGTGTGTGT 534
consensus_10801#1      A-ACCTCACGTTAGGA-TATGGGGGTACTGCCAGTTCATTATGCTTGTTGTAATGCATTC 400
consensus_10801#2      ------------------------------------------------------------
                                                                                   

consensus_10801#0      GCCAAATTAGGGGAGATCAGAGAGTTATAAAGGGCGGTTTGGTTCTGGTAGTATTTAGAA 594
consensus_10801#1      GACTACTATGAGTAGGTGCATGTTGTGTATTGAGAGATCTGG-------AGTACTTA--- 450
consensus_10801#2      ------------------------------------------------------------
                                                                                   

consensus_10801#0      TCGATAGGTGGGTCCCCAAGCAGGCCAACATTATGATTGTCTTGTGTGCAGTGGGGTGTT 654
consensus_10801#1      ----TGGGTG--TTTAGAGAGAATTTAGTATTATT-TCGCATTACAGTGTTTGGGCGGTT 503
consensus_10801#2      ------------------------------------------------------------
                                                                                   

consensus_10801#0      CTACTCCTATTACGGGTAGTTAGGGGAGTTGTATGTTTCAAATAATTATTGCATGATTGT 714
consensus_10801#1      ATAG-------------------------------------------------------- 507
consensus_10801#2      ------------------------------------------------------------
                                                                                   

consensus_10801#0      CTGACATTGTTGCCGGGGATGGTGTTCCTGTTGTGTGGGCTGTGCTGATTCCTGTAACCT 774
consensus_10801#1      ------------------------------------------------------------
consensus_10801#2      ------------------------------------------------------------
                                                                                   

consensus_10801#0      GCATGTTTCAAGCTATATGGCTTATTGGCATCATGTGTAAGTGTGGGT 822
consensus_10801#1      ------------------------------------------------
consensus_10801#2      ------------------------------------------------
                                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)