These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10804#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2175 fasta sequence [AATACAATTGTTTGTATACTACTAAAGAACTTACATGTAAAGATCGTGTTAACCGTGACCCAATAACACTTCAAGGAGATTTAGGTGAAGAACTAGACATGTNTAGACCACATGGTGGTAGGCCAAGAAATAAAATTGATCGTAATATACATGTTTCAAGGTCTGATTCTATCAGTGGTAGATGCGAATATAATGTAGAAAACAATTCAGTAAATCACTACAATGAAAGACAATGTAACGAAGAGAATTC---AAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACTGCCAGAAACAAAACTAGTCCGATCTCAGTCAGTACGACATTATAAAGAAGCATGGGCTACACATGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCG-AGGAATGAAACATTTTCC-ATGCAATAAAAA-TAGTGATGATCCCGTGACCCATCGATTATCAATTAATCATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGCTTCAAAATCTAGATTCAATACCCTGAGAGCGAATACTAATCCGTTACACATCAACAGAAAAATATATCTTCCGATCAATCACCAATTGAATTGAACGATGAAACATCGACAATCGGAGACTTCAATGAAGTGACTATAGGCAATGTGTCTGCAGTTCCAGAGAATAGAAAATTACGAAGGGCTCTTCGAAATCCCATTACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCAAATTCTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCAAACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAAAGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATCCGCCC--AAAAAAACCCGAGATGCTAACTGAAAAACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACAGTCACAGCCAATTACTGAGACACAATTGTCTACAAAAGAGGCGGAGCCACAAACACCGAAAATGGTTGCAGAACCACAGACACTAGAGACTGAAAAACAGAAAACACCGAAAGAAGTAGCTAAGCCACAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACCACAGACACCAGAAACTGAAGAACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAGAAGCTGAGATACCACAAGCACCGAAAGAAGTAGCTAAGCCACAAACACCGAAAACCGAAGAACTAAAAACGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGGGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGACGCACAAACTTTGAAGAACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACGTATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATGGACGGTATTTTCGTTTATTATTTGATTCAGAAAATTTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAG-ATATATTTTGAAATTTTTCAAGTATATTCACTTACCGGTCCTTTAAAAAAAAAAAAAAAA] [-] EMBL CD062682 [AATACAATTGTTTGTATACTACTAAAGAACTTACATGTAAAGATCGTGTTAACCGTGACCCAATAACACTTCAAGGAGATTTAGGTGAAGAACTAGACATGTNTAGACCACATGGTGGTAGGCCAAGAAATAAAATTGATCGTAATATACATGTTTCAAGGTCTGATTCTATCAGTGGTAGATGCGAATATAATGTAGAAAACAATTCAGTAAATCACTACAATGAAAGACAATGTAACGAAGAGAATTCAAGAAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACTGCCAGAAACAAAACTAGTCCGATCTCAGTCAGTACGACATTATAAAGAAGCATGGGCTACACATGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCGAAGGAATGAAACATTTTCCNATGCAATAAAAANTAGTGATGA ] [+] EMBL SMVIFEPIA [ ATCACTACAATGAAAGACAATGTAACGAAGAGAATTC AAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACCGCCAGAAACAAAACTAGTCCGATCTCGGTCAGTACGACATTATAAAGAAGCATGGGCTACACATGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCG AGGAATGAAACATTTTCC ATGCAATAAAAA TAGTGATGATCCCGTGACCCATCGATTATCAATTAATCATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGCTTCAAAATCTAGATTCAATACCCTGAGAGCGAATACTAATCCGTTACACATCAACAGAAAAATATATCTTCCGATCAATCACCAATTGAATTGAACGATGAAACATCGACAATCGGAGACTTCAATGAAGTGACTATAGGCAATGTGTCTGCAGTTCCAGAGAATAGAAAATTACGAAGGGCTCTTCGAAATCCCATTACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCAAATTCTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCAAACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAAAGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATCCGCCC AAAAAAACCCGAGATGCTAACTGAAAAACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACAGTCACAGCCAATTAC GAGACACAATTGTCTACAAAAGAGGCG GCGACAAACACCGAAAATGGTTGCAGAACCACAGACACTAGAGACTGGAAAACAGAAAACACCGAAAGAAGTAGCTAAGCCACAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACCACAGACACCAGAAACTGAAGAACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAGAAGCTGAGATACCACAAGCACCGAAAGAAGTAGCTAAGCCACAAACACCGAAAACCGAAGAACTAAAAACGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGTGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGGGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGAACAACAAGATGCCACGCCTGTCTGACGCACAAACTTTGAAGAATGACCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTGGAATAAATGTTCAACTGGCTTGGTAAATC TGGTTGCTGACTGGATTATTCTCACGTATTTAGTTAAAGAGAACTG ] [-] EMBL CD148001 [ CATCGACAATCGGAGACTTCAATGAAGTGACTATAGGCAATGTGTCTGCGGTTCCAGAGAATAGAAAATTACGAAGGGCTCTTCGAAATCCCATTACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTGCAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCAAATTCTACGAGCAAACCGACT ] [-] EMBL CD067991 [ GTGTCTGCAGTTCCAGAGAATAGAAAATTACGAAGGGCTCTTCGAAATCCCATTACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATACTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCGAATTCTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCAAACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAAAGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATCCGCCCAAAAAAAAACCCGAGATGCTAACTGAAAAACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACAGTCACAGCCAATTACTGAGACACAATTGTCTACAAAAGAGGCGGAGCCACAAACACCGAAAATGGTTGCAGAACCACAGACACTAGAGACTGAAAAACAGAAAACACCGAAAGAAGTAGCTAAGCCACAGACA ] [-] EMBL CD068031 [ AATAGAAAATTACGAAGGGCTCTTGGAAATCCCATTACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATACTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCGAATTTTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCAAACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAAAGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATCCGCCCAAAAAAAAACCCGAGATGCTAACTGAAAAACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACAGTCACAGCCAATTACTGAGACACAATTGTCTACAAAAGAGGCGGAGCCACAAACACCGAAAATGGTTGCAGAACCACAGACACTAGAGACTGAAAAACAGAAAACACCGAAAGAAGTAGCTAAGCCACAGACA ] [-] EMBL CD183089 [ CATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCAAATTCTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCAAACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAAAGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATC ] [+] EMBL CD066145 [ ACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACAGTCACAGCCAATTACTGAGACACAATTGTCTACAAAAGAGGCGGAGCCACAAACACCGAAAATGGTTGCAGAACCACAGACACTAGAGACTGAAAAACAGAAAACACCGAAAGAAGTAGCTAAGCCACAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACTACAGACACCAGAAACTGGAGAACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAGAAGCTGAAATACCACAAGCACCGAAAGAAGTAGCTAAGCCACAAACACCGAAAACCGAAGAACTAAAAATGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGAGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGC ] [+] EMBL CD192108 [ CTGCGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGGGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTG ] [-] EMBL CD076787 [ AGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGAGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGACGCACAAACTTTGAAGAACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACGTATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATGGACGGTATTTTCGTTTATTATTTGATTCAGAAAATTTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAGAATATATTTTGAAAT ] [-] EMBL CD194072 [ GAGTGAAGACCTGGAGTCGCCCATCGGTGAATCCAAATCCCCGCAACCCCCAGCATCCTCATCAAACAACAAAATACGGGACGGGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGGCGCACAAACTTTGAAGAACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCT ] [-] EMBL AI395485 [ TCTACAGAATTCCAAGAGACGGGAGAAGCATGAGTAACCTAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACGTATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATGGACGGTATTTTCGTTTATTATTTGATTCAGAAAATTTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAG ATATATTTTGAAATTTTTCAAGTATATTCACTTACCGGTCCTTTAAAAAAAAAAAAAAAA] [-] EMBL CD075595 [ TTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAG ATATATTTTGAAATTTTTCAAGTATATTCACTTACCGGTCCTTAACAAAtatacta ] consensusID : consensus_10804#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 929 fasta sequence [CGGTCACGAGGGCAAAAACANAAAACACCGAAAGAAGTAGCTAAGTCCCAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACTACAGACACCAGAAACTGGAGAACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAGAAGCTGAAATACCACAAGCACCGAAAGAAGTAGCTAAGCCACAAACACCGAAAACCGAAGAACTAAAAATGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGAGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGACGCACAAACTTTGAAGAACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTG-GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG-TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATAGACGGTATTTTCGTTTCTTATTTGATTCAGAAAATTTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAGATATATTTTGAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD083216 [CGGTCACGAGGGCAAAAACANAAAACACCGAAAGAAGTAGCTAAGTCCCAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACTACAGACACCAGAAACTGGAGAACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAGAAGCTGAAATACCACAAGCACCGAAAGAAGTAGCTAAGCCACAAACACCGAAAACCGAAGAACTAAAAATGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGAGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGACGCACAAACTTTGAAGAACGATCTTACGCCCAGACCATCTACAGAATTGCCA ] [-] EMBL AI395150 [ AAACTCTGAAGAACGATCTTACGCCCAGACCATNTACAGAATTCCCAGAGACGGGAGAAGCATGAGTAACCTAGTG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATGGACGGTATTTTCGTTTCTTATTTGATTCAGAAAATTTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAGATATATTTTGAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD119610 [ ACCGTCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAA ] [+] EMBL CD119540 [ CAGAGACGGGAGAAGCATGAGTAACCTAGTG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAA ] [+] EMBL CD119913 [ CAGAGACGGGAGAAGCATGAGTAACCTAGTG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAA ] [+] EMBL CD119522 [ CAGAGACGGGAGAAGCATGAGTAACCTAGTG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAA ] [-] EMBL CD119436 [ AGAGACGGGAGAAGCATGAGTAACATAATG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG AAATTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATAGACGGa ] [-] EMBL CD119460 [ TGAGTAACCTAATGAGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACGATATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATAGACGGT ] consensusID : consensus_10804#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 872 fasta sequence [TGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCGAGGAATGAAACATTTTCCATGCAATAAAAATACTGATGATCCCGTGACCCATCGATTATCAATTAATCATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCANATTCTACGAGCANACCGACTGGCAGTAAGCCAAGACATCANACACCGNCGNCGNCATCGCAACCGACTTTGACACNNACACCACCCGAGCTAGAACCAAAGTTTGAAAAAGCACCCACACCTATAGAAAAGAAAGTATCCGNCCCAAAAAACCCGAATGCTAACTGAAAACCAACCAGTAAAGAAACCAACGGCCGCCGGGNGGGNNGACAACCCAGCATCTGGGCAAATGTTAATAGGGGGGCGGGGNNNNNNNNAAACCCGAAATGGGTTCGAACCCGGGCCCTCAAACTGGAAAAGAAAACCCCAAAAATTGTTTTCCCCAAACCAAACCGAAACGGGGCCAGAAAATGTTCCCCCCCCCACTGGACCCGCACCCCGNNNNNNCCCGGGGGGGCTCTTCCCAAATTAATTTGGAACCCCCCCCCCGAGAAGTTTTTCCCCCCCCCCCCCGAAATAAACCCCCAAAAATTTTCCACCCGGGGAGGGTGGGCCCCCCAAAAAACCTTCC] [+] EMBL CD081890 [TGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCGAGGAATGAAACATTTTCCATGCAATAAAAATACTGATGATCCCGTGACCCATCGATTATCAATTAATCATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCANATTCTACGAGCANACCGACTGGCAGTAAGCCAAGACATCANACACCGNCGNCGNCATCGCAACCGACTTTGACACNNACACCACCCGAGCTAGAACCAAAGTTTGAAAAAGCACCCACACCTATAGAAAAGAAAGTATCCGNCCCAAAAAACCCGAATGCTAACTGAAAACCAACCAGTAAAGAAACCAACGGCCGCCGGGNGGGNNGACAACCCAGCATCTGGGCAAATGTTAATAGGGGGGCGGGGNNNNNNNNAAACCCGAAATGGGTTCGAACCCGGGCCCTCAAACTGGAAAAGAAAACCCCAAAAATTGTTTTCCCCAAACCAAACCGAAACGGGGCCAGAAAATGTTCCCCCCCCCACTGGACCCGCACCCCGNNNNNNCCCGGGGGGGCTCTTCCCAAATTAATTTGGAACCCCCCCCCCGAGAAGTTTTTCCCCCCCCCCCCCGAAATAAACCCCCAAAAATTTTCCACCCGGGGAGGGTGGGCCCCCCAAAAAACCTTCC] consensusID : consensus_10804#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [AAAATGAAAATAAACACAGTGATGATAATTACAATAGTAATAATAATAATACTCATGAAGATTATACTCAAGACCGTGACCCAATAACACTTCAAGGAGATTTAGGTGAAGAACTAGACATGTTTAGACCACATGGTGGTAGGCCAAGAAATAAAATTGATCGTAATATACATGTTTCAAGGTCTGATTCTATCAGTGGTAGATGCGAATATAATGTAGAAAACAATTCAGTAAATCACTACAATGAAAGACAATGTAACGAAGAGAATTCAAGAAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACTGCCAGAAACAAAACTAGTCCGATCTCAGTCAGTACGACATTATAAAGAAGCAT] [-] EMBL CD197737 [AAAATGAAAATAAACACAGTGATGATAATTACAATAGTAATAATAATAATACTCATGAAGATTATACTCAAGACCGTGACCCAATAACACTTCAAGGAGATTTAGGTGAAGAACTAGACATGTTTAGACCACATGGTGGTAGGCCAAGAAATAAAATTGATCGTAATATACATGTTTCAAGGTCTGATTCTATCAGTGGTAGATGCGAATATAATGTAGAAAACAATTCAGTAAATCACTACAATGAAAGACAATGTAACGAAGAGAATTCAAGAAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACTGCCAGAAACAAAACTAGTCCGATCTCAGTCAGTACGACATTATAAAGAAGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10804#0 AATACAATTGTTTGTATACTACTAAAGAACTTACATGTAAAGATCGTGTTAACCGTGACC 60 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 CAATAACACTTCAAGGAGATTTAGGTGAAGAACTAGACATGTNTAGACCACATGGTGGTA 120 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 GGCCAAGAAATAAAATTGATCGTAATATACATGTTTCAAGGTCTGATTCTATCAGTGGTA 180 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 GATGCGAATATAATGTAGAAAACAATTCAGTAAATCACTACAATGAAAGACAATGTAACG 240 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 AAGAGAATTCAAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACTGCCAGAAA 300 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 CAAAACTAGTCCGATCTCAGTCAGTACGACATTATAAAGAAGCATGGGCTACACATGATC 360 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 CAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCGAGGAATGA 420 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 AACATTTTCCATGCAATAAAAATAGTGATGATCCCGTGACCCATCGATTATCAATTAATC 480 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 ATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGCTTCAAAATCTAGATTCAATA 540 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 CCCTGAGAGCGAATACTAATCCGTTACACATCAACAGAAAAATATATCTTCCGATCAATC 600 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 ACCAATTGAATTGAACGATGAAACATCGACAATCGGAGACTTCAATGAAGTGACTATAGG 660 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 CAATGTGTCTGCAGTTCCAGAGAATAGAAAATTACGAAGGGCTCTTCGAAATCCCATTAC 720 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 TGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTA 780 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 CTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACC 840 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 AGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGT 900 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 ACCTGCTCAGAAAGATGCAAATTCTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCA 960 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 AACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAA 1020 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 AGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATCCGCCCAAAAAAACCCGA 1080 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 GATGCTAACTGAAAAACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACA 1140 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 GTCACAGCCAATTACTGAGACACAATTGTCTACAAAAGAGGCGGAGCCACAAACACCGAA 1200 consensus_10804#1 ------------------------------------------------------------ consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 AATGGTTGCAGAACCACAGACACTAGAGACTGAAAAACAGAAAACACCGAAAGAAGTAGC 1260 consensus_10804#1 ----------------CGGTCACGAGGG---CAAAAACANAAAACACCGAAAGAAGTAGC 41 consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 ------------------------------------------------------------ consensus_10804#0 TAAGCCACAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACCACA 1320 consensus_10804#1 TAAGTCCCAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACTACA 101 consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 --TGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCGA 58 consensus_10804#0 GACACCAGAAACTGAAGA-ACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAG 1379 consensus_10804#1 GACACCAGAAACTGGAGA-ACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAG 160 consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 GGAATGAAACATTTTCCATGCAATAAAAATACTGATGATCCCGTGACCCATCGATTATCA 118 consensus_10804#0 AAGCTGAGATACCACAAGCACCGAAAGAAGTAGCTAAGCCACA--AACACCGAAAACCGA 1437 consensus_10804#1 AAGCTGAAATACCACAAGCACCGAAAGAAGTAGCTAAGCCACA--AACACCGAAAACCGA 218 consensus_10804#3 -----------------------------------AAAATGAA--AATAAACACAGTGAT 23 consensus_10804#2 ATTAATCATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGGTGAAGGAATGTGT 178 * * * consensus_10804#0 AGAACTAAAAACGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACT 1497 consensus_10804#1 AGAACTAAAAATGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACT 278 consensus_10804#3 GATAATTACAATAGTAATAATAATAATACTCATGAAGATTATACTCAAGACCGTGACCCA 83 consensus_10804#2 GACAGTGATTATATTGACCTGCTTA--AATTACCAAGTGAATATTACTTCCGAAGAAATC 236 * * * * * ** * * ** * * * consensus_10804#0 ACA-CACACCAGTAGAAAC-TCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACT 1555 consensus_10804#1 ACA-CACACCAGTAGAAAC-TCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACT 336 consensus_10804#3 ATAACACTTCAA-GGAGAT-TTAGGTGAAGA--ACTAGACATG-TTTAGACCACATGGTG 138 consensus_10804#2 GAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACC-ACCAGTACAACCATCA 295 *** * * * * ** ** * consensus_10804#0 GCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTG 1615 consensus_10804#1 GCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTG 396 consensus_10804#3 GTAGGCCAAGAAATAA---AATTGATCGTAATATACATGTT---TCAAGGTCTG-ATTCT 191 consensus_10804#2 TCAACAACTACACCTTC--AACTAATACTGCTGTGTCTGTTAAAAAAGTACCTG--CTCA 351 * * * *** * *** * consensus_10804#0 GCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAA-ATACG 1674 consensus_10804#1 GCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAA-ATACG 455 consensus_10804#3 ATCAGTGGTAGATGCGAATA--TAATGTAGAAAACAATTCAGTAAATCACTACA-ATGAA 248 consensus_10804#2 GAAAGATGCANATTCTACGAG-CANACCGACTGGCAGTAAGCCAAGACATCANACACCGN 410 * * ** * * ** * ** * * * consensus_10804#0 GGACGGGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCA--CCAACTAGTGAA 1732 consensus_10804#1 GGACGAGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCA--CCAACTAGTGAA 513 consensus_10804#3 AGACAATGTAACGAAGAGAATTCAAGAAGATATTCTTATCTTGCTA--CAGATCCG-ATA 305 consensus_10804#2 CGNCGNCATCGCAACCGACTTTGACACNNACACCACCCGAGCTAGAACCAAAGTTTGAAA 470 * * * * * * * * * consensus_10804#0 GCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGAC-GCACAA-ACTT-TGAAG 1789 consensus_10804#1 GCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGAC-GCACAA-ACTT-TGAAG 570 consensus_10804#3 ACTCATTCACTGCCAGA-AACAAAACTAGTCCGATCTCAGTCAGTACGACATTA-TAAAG 363 consensus_10804#2 AAGCACCCACACCTATAGAAAAGAAAGTATCCGNCCCAAAAAACCCGAATGCTAACTGAA 530 * ** * ** * * * * * * consensus_10804#0 AACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACC 1849 consensus_10804#1 AACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACC 630 consensus_10804#3 AAGCAT------------------------------------------------------ 369 consensus_10804#2 AACCAACCAGTAAAGAAACCAACGGCCGCCGGGNGGGNNGACAACCCAGCATCTG-GGCA 589 ** * consensus_10804#0 TAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTC 1909 consensus_10804#1 TAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTC 690 consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 AATGTTAATAGGGGGGCGGGGNNNNNNNNAAACCCGAAATGGGTT--CGAACCCGGGCCC 647 consensus_10804#0 ACGTATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTT 1969 consensus_10804#1 ACGTATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTT 750 consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 TCAAACTGGAAAAGAAAACCCCAAAAATTGTTTTCCCCAAACCAAACCGAAACGGGGCCA 707 consensus_10804#0 TAAGCTTAACCCCGGGTGATGGACGGTATTTTCGTTTATTATTTGATTCAGAAAATTTTA 2029 consensus_10804#1 TAAGCTTAACCCCGGGTGATAGACGGTATTTTCGTTTCTTATTTGATTCAGAAAATTTTA 810 consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 GAAAATGTTCCCCCCCCCACTGGACCCGCACCCCGNNNNNNCCCGGGGGGGCTCTTCCCA 767 consensus_10804#0 ACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATAT 2089 consensus_10804#1 ACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATAT 870 consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 AATTAATTTGGAACCCCCCCCCCGAGAAGTTTTTCCCCCCCCCCCCCGAAATAAACCCCC 827 consensus_10804#0 AATGATCAAACAAATCAGCAAGCCAGATATATTTTGAAATTTTTCAAGTATATTCACTTA 2149 consensus_10804#1 AATGATCAAACAAATCAGCAAGCCAGATATATTTTGAAA------AAAAA---------- 914 consensus_10804#3 ------------------------------------------------------------ consensus_10804#2 AAAAATTTTCCACCCGGGGAGGGTGGGCCCCCCAAAAAACCTTCC--------------- 872 consensus_10804#0 CCGGTCCTTTAAAAAAAAAAAAAAAA 2175 consensus_10804#1 ----------AAAAAAAAAAAAAAA- 929 consensus_10804#3 -------------------------- consensus_10804#2 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||