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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1058 fasta sequence
[CCTTCGAGCCAAAAATTCGGCACGAGGTGAAGCTGACTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCATGATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTG-AAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTG-AAACATANNTGT-ACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGNAATTTTCGCCTCTTTCGTCTTGNCTATTCAGNATTTTGNGCATTAAATATCANTGTTATTTACACAGATATTCTGATATTAAATCGATCATACCTACTCTTTCTATATGGCCCTTGGAATCAGTTGATCCGGCTTTTGTCTGTTCGGGAGGTCAATTTTTTAATGATTAAGTTGGGGGGGGGGGGTTTTGTTTTTTGAATTCAAATTGGCGTCCCAAAAGAGCCTTTATAAAACCTC]
[+] EMBL CD081825 [CCTTCGAGCCAAAAATTCGGCACGAGGTGAAGCTGACTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCATGATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTG AAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTG AAACATANNTGT ACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGNAATTTTCGCCTCTTTCGTCTTGNCTATTCAGNATTTTGNGCATTAAATATCANTGTTATTTACACAGATATTCTGATATTAAATCGATCATACCTACTCTTTCTATATGGCCCTTGGAATCAGTTGATCCGGCTTTTGTCTGTTCGGGAGGTCAATTTTTTAATGATTAAGTTGGGGGGGGGGGGTTTTGTTTTTTGAATTCAAATTGGCGTCCCAAAAGAGCCTTTATAAAACCTC]
[+] EMBL CD114133 [ TTGGCTGAAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTGCTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTCTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTCGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATTATTGCTGAAAACATA ATGTAACTGTTGATTCATGAACGA ]
consensusID : consensus_10805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1030 fasta sequence
[CAGAGGGGATCCCTGCTGGCTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCAAAGTGTCGTACAACAGAAGCGCTCTTATTGGTTATCCTGGATTTAATGTCGAGTTGGATCGCTCAGTTAGGGATGATTATTTATATTTGAAGTGTCCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGC-TTTTTTGTCTTGCGAATCGTCTGGGAAATCCAATATTACAAGCACAAATGGCAACCACTCACCCTGCGGTAAAAAGAAAACTGTTGAAACTGTTATAACACTTTCCGATTCGGAGTCTGGTGAAACTAATTCAAATAGCTCACAAACGGAAGAGACTCTAGATGAAGCTGAAGAACTTCATTCAAATCCAGATGTTTTGATCGTTCATGAGCCTGAACAGGGAACACCCACACCACTCTGTCCCTTGACTATTANAAACGATTCTGCTAATGATATTACTGACCAGTCTTCATTTTTATCATCACAACCACCTAAACGTCCTTCTTTGGAAGCTTTCAGTATGGGTATACAACCTTATAGGCCATTTGAAAATCTTCCTGGTGTGCACGGTGGTTATCAACGTGTACTCAACTCACTCAAGAATTCACGTGAGTCTTTAGCATCTCATAGTAATGTATCAGATCCCAAAAATATACAAGATAATGATTATCAGTCGTCATCAGTTCGACTGAGTCGTCACAATAGCAATCACTCCTCTTGTAAAAGCAATCGATATTAAAAAGAATATATACCATTCACTTTTGAGTTTCATTTTATATCCTTCAGTGTTTAAAAACTGAAAAATGTATATATGTGTAAATTATTCTACTCACATTTTAACAGCACGCGTTCCATATATACATGTCCATTGATATCTCTGACTTTGATTTTATTCATTTTTCTGTAAATTAATAAATTCACCTAATTGTTAATATTCGTTTGAAAGTGCCATGCATGTCAATTGTTATTAAACAT]
[+] EMBL CD114390 [CAGAGGGGATCCCTGCTGGCTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCAAAGTGTCGTGCAACAGAAGCGCTCTTATTGGTTATCCTGGATTTAATGTCGAGTTGGATCGCTCAGTTAGGGATGATTATTTATATTTGAAGTGTCCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGC TTTTTTGTCTTGCGAATCGTCTGGGAAATCCAATATTACAAGCACAAATGGCAACCACTCACCCTGCGGTAAAAAGAAAACTGTTGAAACTGTTATAACACTTTCCGATTCGGAGTCTGGTGAAACTAATTCAAATAGCTCACAAACGGAAGAGTCTCTAGATGAAGCTGAAGAACTTCATTCAAATCCAGATGTTTTGATCGTTCATGAGCCTGAACAGGGAAC ]
[-] EMBL CD179539 [ GCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCAAAGTGTCGTACAACAGAAGCGCTCTTATTGGTTATCCTGGATTTAATGTCGAGTTGGATCGCTCAGTTAGGGATGATTATTTATATTTGAAGTGTCCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGC TTTATTGTCTTGCGAATCGTCTGGGAAATCCAATATTACAAGCACAAATG ]
[+] EMBL CD153136 [ TACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCAAAGTGTCGTACAACAGAAGCGCTCTTATTGGTTATCCTGGATTTAATGTCGAGTTGGATCGCTCAGTTAGGGATGATTATTTATATTTGAAGTGTCCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGCTTTTTTTGTCTTGCGAATCGTCTGGGAAATCCAATATTACAAGCACAAATGGCAACCACTCACCCTGCGGTAAAAAGAAAACTGTTGAAACTGTTATAACACTTTCCGATTCGGAGTCTGGTGAAACTAATTCAAATAGCTCACAAACGGAAGAGACTCTAGATGAAGCTGAAGAACTTCATTCAAATCCAGATGTTTTGATCGTTCATGAGCCTGAACAGGGAACACCCACACCACTCTGTCCCTTGACTATTANAAACGATTCTGCTAATGATATT ]
[-] EMBL CD179451 [ TTAGGGATGATTATTTATATTTGAAGTGTCCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGC TTTTTTGTCTTGCGAATCGTCTGGGAAATCCAATATTACAAGCACAAATGGCAACCACTCACCCTGCGGTAAAAAGAAAACTGTTGAAACTGTTATAACACTTTCCGATTCGGAGTCTGGTGAAACTAATTCAAATAGCTCACAAACGGAAGAGACTCTAGATGAAGCTGAAGAACTTCATTCAAATCCAGATGTTTTGATCGTTCATGAGCCTGAACAGGGAACACCCACACCACTCTGTCCCTTGACTATTAGAAACGATTCTGCTAATGATATTACTGACCAGTCTTCATTTTTATCATCACAACCACCTAAACGTCCTTCTTTGGAAGCTTTCAGTATGGGTATACAACCTTATAGGCCATTTGAAAATCTTCCTGGTGTGCACGGTGGTTATCAACGTGTACTCAACTCACTCAAGAATTCACGTGAGTCTTTAGCATCTCATAGTAATGTATCAGATCCCAAAAATATACAAGATAATGATTATCAGTCGTCATCAGTTCGACTGAGTCG ]
[-] EMBL CD077047 [ ttcCCCAAAAATATACAAGATAATGATTATCAGTCGTCATCAGTTCGACTGAGTCGTCACAATAGCAATCACTCCTCTTGTAAAAGCAATCGATATTAAAAAGAATATATACCATTCACTTTTGAGTTTCATTTTATATCCTTCAGTGTTTAAAAACTGAAAAATGTATATATGTGTAAATTATTCTACTCACATTTTAACAGCACGCGTTCCATATATACATGTCCATTGATATCTCTGACTTTGATTTTATTCATTTTTCTGTAAATTAATAAATTCACCTAATTGTTAATATTCGTTTGAAAGTGCCATGCATGTCAATTGTTATTAAACAT]
consensusID : consensus_10805#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1016 fasta sequence
[GGTTTAATGCGACTTCAGAATGAATTAGATGAAACTAAAGTTATTTTACATAATACATTAGAATCGTTATTGTCTAGAGGTGAAAAACTTGATGATTTAGTTGAACGATCCGAGGGTCTTAGCTTACAATCAAAGATGTTTTATACTACAGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAAACATAATGTAACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGAATTTTCGCCTCTTTCGTCTTTGTCTATTCAGTATTTTGTGCATTAAAATATCAGTGTATATTTACACAGAATATTCTGATTATTAATCGATTCAATACCTACTTCTCTCTATTATTGTCCCTCTGTAGTTCATGTTGATTCGTGGTTCTGTTTTGTTTGTGGAG-TTTCAA-TTTTTTAT-AATTGATTTCAATGTT-TGTGGTTGGGGTTTTTTGTATTTGGAATATCACAGATTTGACGTTTACAAGATGATCGTTCATTAAATCAAATACTCTAACAT]
[+] EMBL CD154741 [GGTTTAATGCGACTTCAGAATGAATTAGATGAAACTAAAGTTATTTTACATAATACATTAGAATCGTTATTGTCTAGAGGTGAAAAACTTGATGATTTAGTTGAACGATCCGAGGGTCTTAGCTTACAATCAAAGATGTTTTATACTACAGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTC ]
[+] EMBL CD078521 [ ATGAACCTAAAGTTATTTTACATAATACATTAGAATCGTTATTGTCTAGAGGTGAAAAACTTGATGATTTAGTTGAACGATCCGAGGGTCTTAGCTTACAATCAAAGATGTTTTATACTACAGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGCCCTATG ]
[-] EMBL CD166856 [ gaccatTCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATT CGCTACTTGA TTTAACATGAT ATTTTTTG TGTACTGAtg ]
[-] EMBL CD166663 [ CACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTAC TGATTTTAACATGATAATTTTTTGTTGTACTGATGC GTCCGg ]
[+] EMBL CD141315 [ AGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAAACATAATGTAACTGTTGATTCATGCACGATGTATATACATATTTATTATGGTTATCATATCTTATGGAATTNTCGCgt ]
[-] EMBL CD201741 [ TTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAAACATAATGTAACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGAATTTTCGCCTCTTTCGTCTTTGTCTATTCAGTATTTTGTGCATTAAAATATCAGTGTATATTTACACAGAATATTCTGATTATTAATCGATTCAATACCTACTTCTCTCTATTATTGTCCCACTGTAGTTCATGTT ]
[+] EMBL CD128156 [ GATATTAATAAGCTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAAACATAATGTAACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGAATTTTCGCCTCTTTCGTCTTTGTCTATTCAGTATTTTGTGCATTAAAATATCAGTGTATATTTACACAGAATATTCTGATTATTAA ]
[-] EMBL CD073404 [ CTATTCAGGATTTTGTGCATTAAAATATCAGTGTATATTTACACAGAATATTCTGATTATTAATCGATTCAATACCTACTTCTCTCTATTATTGTCCCTCTGTAGTTCATGTTGATTCGTGGTTCTGTTTTGTTTGTGGAGATTTCAA TTTTTTAT AATTGATTTCAATGTT TGTGGTTGGGGTTTTTTGTATTTGGAATATCACAGATTTGACGTTTACAAGATGATCGTTCATTAAATCAAATACTCTAACAT]
[+] EMBL CD125738 [ AATCGATTCAATACCTACTTCTCTCTATTATTGTCCCTCTGNAGNTCATGTTGATTCGTGCTTCTGTTCTGTTCGTGGAG TTTCAATTTTTTTAT AATTGATTTCA ]
[-] EMBL CD075549 [ A TTTTTTATAAATTGATTTCAATGTTGTG GGTTGGGGTTTTTTGTATTTGGAATATCACAGATTTGACGTTTACAAGATGATCGTTCATTAAATCAAATACTCTAACAT]
consensusID : consensus_10805#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 619 fasta sequence
[ATTTTACGGAATTAGAAGAGGAATCTCTTACTACCAGCTCCCAAAATCCTAGGAGCCGAAAGCCTGTTTATGGAAAGCGCTATCATGAAGCTGACTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCAT-GATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAA-ATGCTGCGTTATACTGTAAAGTCTTCATCGTT-CAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGNGATTCATTCGATCAGTAATATTGTGTTATACTAC]
[+] EMBL CD078950 [ATTTTACGGAATTAGAAGAGGAATCTCTTACTACCAGCTCCCAAAATCCTAGGAGCCGAAAGCCTGTTTATGGAAAGCGCTATCATGAAGCTGACTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCAT GATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAA ATGCTGCGTTATACTGTAAAGTCTTCATCGTT CAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGNGATTCATTCGATCAGTAATATTGTGTTATACTAC]
[+] EMBL CD157317 [ ACTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCAT GATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAATATGCTGCGTTATACTGTAAAGTCTTCATCGTTGTAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTGGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACGTAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGA ]
[-] EMBL CD157079 [ CTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACGAAATCTGAGTAGTCATAGATATTCCAATCCACAGTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGATGCTGTTGGTGCCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAA ATGCTGCGTTATACTGTAAAGTCTTCATCGTT CAG ]
[+] EMBL BG932534 [ tAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCAT GATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAA ATGCTGCGTTATACTGTAAAGTCTTCATCGTT CAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACct ]
consensusID : consensus_10805#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence
[TNACATAATACATTAGAATCGNTATTGTCTAGAGGTGAAAAATTGGATGATTAGTGGAACGATCCGCAGGTCTTAGCTTACAATCAAAGATGTNTTATACTACAGGGANGAAAACAANCAAATGCTGCGTTATGNTGTAAAGTCTTCATCGTNCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGGTGGAATCAGNTATTANACCTAATCAATAGAAAATTGGACCATACATAATTTCTTTCCTACTNGAATCACTTGGTATTCGTCCAGAATTCTAAGTCGATC]
[+] EMBL SM920 [TNACATAATACATTAGAATCGNTATTGTCTAGAGGTGAAAAATTGGATGATTAGTGGAACGATCCGCAGGTCTTAGCTTACAATCAAAGATGTNTTATACTACAGGGANGAAAACAANCAAATGCTGCGTTATGNTGTAAAGTCTTCATCGTNCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGGTGGAATCAGNTATTANACCTAATCAATAGAAAATTGGACCATACATAATTTCTTTCCTACTNGAATCACTTGGTATTCGTCCAGAATTCTAAGTCGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10805#0 -----------------------------------------------CCTTCGAGCCAAA 13
consensus_10805#3 ATTTTACGGAATTAGAAGAGGAATCTCTTACTACCAGCTCCCAAAATCCTAGGAGCCGAA 60
consensus_10805#2 ------------------------------------------------------------
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 ------------------------------------------------------------
consensus_10805#0 AATTCG----------GCACGAG-GTGAAGCTGACTTTGACAATAAGTATAGACCCGGAA 62
consensus_10805#3 AGCCTGTTTATGGAAAGCGCTATCATGAAGCTGACTTTGACAATAAGTATAGACCCGGAA 120
consensus_10805#2 ------------------------------------------------------------
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 --------------------------------------------CAGAGGGGATCCCTGC 16
consensus_10805#0 GGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCATGATATTCCAATCCACA 122
consensus_10805#3 GGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCATGATATTCCAATCCACA 180
consensus_10805#2 -------------------GGTTTAATGCGACTTCAGAATGAATTAGATGAAACTAAAGT 41
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 TGGCTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGA-CAACA 75
consensus_10805#0 TTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCT-GCTG--T-T 178
consensus_10805#3 TTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCT-GCTG--T-T 236
consensus_10805#2 TATTTTACAT-AATACATTAGAAT-CGTTATTGTCTAGAGGTGAAAAACTTGATGATT-T 98
consensus_10805#4 ----TNACAT-AATACATTAGAAT-CGNTATTGTCTAGAGGTGAAAAATTGGATGATT-- 52
consensus_10805#1 CGGACAGTTT-AGAATCTGAACGCAAAGTGTCGTACAACAGAAGCGCTCTTATTGGTTAT 134
* * * * * * * * ** *
consensus_10805#0 GGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTT---TAGAATCTGAACG- 234
consensus_10805#3 GGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTT---TAGAATCTGAACG- 292
consensus_10805#2 AGTTGAACGATCCGAGGGTCTTAGCTTACAATCAAAGATGTTT---TATACTACA---G- 151
consensus_10805#4 AGTGGAACGATCCGCAGGTCTTAGCTTACAATCAAAGATGTNT---TATACTACA---G- 105
consensus_10805#1 CCTGGATTTAATGTCGAGTTGGATCGCTCAGTTAGGGATGATTATTTATATTTGAAGTGT 194
* * ** * * ** * ** * * *
consensus_10805#0 ----CGAAGAAAACA-AACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCA 289
consensus_10805#3 ----CGAAGAAAACA-AACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCA 347
consensus_10805#2 ----CGAAGAAAACA-AACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCA 206
consensus_10805#4 ----GGANGAAAACA-ANCAAATGCTGCGTTATGNTGTAAAGTCTTCATCGTNCAGTTCA 160
consensus_10805#1 CCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGCTTTTTTGTCTTGCGAATCG 254
** * *** * * ** ****** * ** * ** ** * * **
consensus_10805#0 CCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTA--ATCAATAGAA 347
consensus_10805#3 CCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTA--ATCAATAGAA 405
consensus_10805#2 CCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTA--ATCAATAGAA 264
consensus_10805#4 CCTCTGCTCATTTCTCTTCATGTCCGGTGGAATCAGNTATTANACCTA--ATCAATAGAA 218
consensus_10805#1 TCTGGGAA-ATCCAATATTACAAGCACAAATGGCAACCACTCACCCTGCGGTAAAAAGAA 313
** * ** * * * ** * * *** * ** ****
consensus_10805#0 AATT--TGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAAT 405
consensus_10805#3 AATT--TGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAAT 463
consensus_10805#2 AATT--TGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAAT 322
consensus_10805#4 AATT---GGACCATACATAATTTCTTTCCTACTNGAATCACTTGGTATTCGT-CCAGAAT 274
consensus_10805#1 AACTGTTGAAACTGTTATAACA-CTTTCCGATTCGGAGTCTGGTGAAACTAATTCAAATA 372
** * * * * **** ****** * * * * * * ** *
consensus_10805#0 TCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACA 465
consensus_10805#3 TCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACA 523
consensus_10805#2 TCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACA 382
consensus_10805#4 TCTAAGTCGATC------------------------------------------------ 286
consensus_10805#1 GCTCA--CAAAC---GGAAGAGACTCTAGATGAAGCTGAAGAACTTCATTCAAATCCAGA 427
** * * * *
consensus_10805#0 TAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCT-T 524
consensus_10805#3 TAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCT-T 582
consensus_10805#2 TAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCT-T 441
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 TGTTTTGATCGTTCATGAGCCTGAACAGGGAACACCCACACCACTCTGTCCCTTGACTAT 487
consensus_10805#0 CGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTT 584
consensus_10805#3 CGNGATTCATTCGATCAGTAATATTGTGTTATACTAC----------------------- 619
consensus_10805#2 CGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTT 501
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 TANAAACGATTCTGCTAATGATATTACTGACCAGTCTTCATTTTTATCATCACAACCACC 547
consensus_10805#0 ACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGA 644
consensus_10805#3 ------------------------------------------------------------
consensus_10805#2 ACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGA 561
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 TAAACGTCCTTCTTTGGAAGCTTTCAGTATGGGTATAC--AACCTTATAGGCCATTTGAA 605
consensus_10805#0 ACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTT 704
consensus_10805#3 ------------------------------------------------------------
consensus_10805#2 ACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTT 621
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 AATCTTCCTGGTGTGCACGGTGGTTATCAACGTGTACTCAACTCACTCAAGAATTCACGT 665
consensus_10805#0 TGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAA-CATANNTGT 763
consensus_10805#3 ------------------------------------------------------------
consensus_10805#2 TGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAAACATAATGTA 681
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 GAGTCTTTAGCATCTCATAGTAATGTATCAGATCCCAAAAATATACAAGATAATGATTAT 725
consensus_10805#0 ACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGNAA 823
consensus_10805#3 ------------------------------------------------------------
consensus_10805#2 ACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGAAT 741
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 CAGTCGTCATCAGTTCGACTGAGTCGTCACAATAGCAATCACTCCTCTTGTAAAAGCAAT 785
consensus_10805#0 TTTTCGCCTCTTTCGTCTTGNCTATTCAGNATTTTGNGCATTAAATATCANTGTTATTTA 883
consensus_10805#3 ------------------------------------------------------------
consensus_10805#2 TTTCGCCTCTTTCGTCTTTGTCTATTCAGTATTTTGTGCATTAAAATATCAGTGTATATT 801
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 CGATATTAAAAAGAATATATACCATTCACT--TTTGAGTTTCATTTTATATCCTTCAGTG 843
consensus_10805#0 CACAGATATTCTGATATTAAATCGATCATACCTACTCTTTCTATATGGCCCTTGGAATCA 943
consensus_10805#3 ------------------------------------------------------------
consensus_10805#2 TACACAGAATATTCTGATTATTAATCGATTCAATACCTACTTCTCTCTATTATTGTCCCT 861
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 TTTAAAAACTGAAAAATGTATATATGTGTAAATTATTCTACTCACATTTTAACAGCACGC 903
consensus_10805#0 GTTGATCCGGCTTTTGTCTGTTCGGGAGGTCAATTTTTTAATGATTAAGTTGGGGGGGGG 1003
consensus_10805#3 ------------------------------------------------------------
consensus_10805#2 CTGTAGTTCATGTTGATTCGTGGTTCTGTTTTGTTTGTGGAGTTTCAATTTTTTATAATT 921
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 GTTCCATATATACATGTCCATTGATATCTCTGACTTTGATTTTATTCATTTTTCTGTAAA 963
consensus_10805#0 GGGTTTTGTTTTTTGAATTCAAATTGGCGTCCCAAAAGAGCCTTTATAAAACCTC----- 1058
consensus_10805#3 ------------------------------------------------------------
consensus_10805#2 GATTTCAATGTTTGTGGTTGGGGTTTTTTGTATTTGGAATATCACAGATTTGACGTTTAC 981
consensus_10805#4 ------------------------------------------------------------
consensus_10805#1 TTAATAAATTCACCTAATTGTTAATATTCGTTTGAAAGTGCCATGCATGTCAATTGTTAT 1023
consensus_10805#0 -----------------------------------
consensus_10805#3 -----------------------------------
consensus_10805#2 AAGATGATCGTTCATTAAATCAAATACTCTAACAT 1016
consensus_10805#4 -----------------------------------
consensus_10805#1 TAAACAT---------------------------- 1030
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||