cluster # 10811

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Schistosoma mansoni
cluster # 10811 cluster # 10811 Sequences # 22 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10811#0 length = 181 sequences # 19

consensus_10811#1 length = 149 sequences # 1
consensus_10811#2 length = 143 sequences # 2

consensusID : consensus_10811#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 19
consensus length = 181
fasta sequence

                              [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGCCACCA]

[+] EMBL CD072814             [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGATGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGC     ]
[+] EMBL CD072696             [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA        ]
[+] EMBL CD072704             [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA        ]
[+] EMBL CD072708             [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA        ]
[+] EMBL CD072714             [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA        ]
[+] EMBL CD072718             [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA        ]
[+] EMBL CD072847             [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA        ]
[+] EMBL CD072857             [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA        ]
[+] EMBL CD072866             [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA        ]
[+] EMBL CD071664             [TGGGCCGGTCTGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA        ]
[+] EMBL CD072848             [TGGGCCGGTCCGCCCCTCCTTAGACGACCCGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA        ]
[+] EMBL CD072682             [TGGGCCGGTCCGCCCCTCTTTAGACGACCTGGACAATCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGA                                                                  ]
[-] EMBL CD112300             [ GGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATAACAGGCGCAC       ]
[-] EMBL CD071570             [ GGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCAC       ]
[+] EMBL CD155889             [                           CCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGCCACC ]
[+] EMBL CD089874             [                           CCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGCCACC ]
[-] EMBL CD118510             [                            CTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGCCACCA]
[-] EMBL CD119737             [                             TGGACAACCCGTCCTCCAACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTC                                                        ]
[-] EMBL CD071724             [                                         ctTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCGCGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCAC       ]




>consensus_10811#0
TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCAT
ATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCC
CGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGCCACC
A

consensusID : consensus_10811#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 149
fasta sequence

                              [CAGTATCAGGACAACCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACTTCACAGGCGCTATCCCGCTACCGCACCACGCGGGGACTTTTGCCTGCTGGGTTTCCCCCCTGGGCCGGTCCGCCCC]

[+] EMBL CD150501             [CAGTATCAGGACAACCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACTTCACAGGCGCTATCCCGCTACCGCACCACGCGGGGACTTTTGCCTGCTGGGTTTCCCCCCTGGGCCGGTCCGCCCC]




>consensus_10811#1
CAGTATCAGGACAACCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGA
CGCCCGATCAACTTCACAGGCGCTATCCCGCTACCGCACCACGCGGGGACTTTTGCCTGC
TGGGTTTCCCCCCTGGGCCGGTCCGCCCC

consensusID : consensus_10811#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 143
fasta sequence

                              [GCAGGCAGAATGTCCTTGATCGGGCGTCCACGCTAAGCACGGCGCCGATATGGATGAGCTGTCGGAGGACGGGTTGTCCAGGTCGTCTAAGGAGGGGCGGACCGGCCCAGGGGGGAAACCCAGCAGGCAAAAGTCCTTTATCG]

[+] EMBL CD112109             [GCAGGCAGAATGTCCTTGATCGGGCGTCCACGCTAAGCACGGCGCCGATATGGATGAGCTGTCGGAGGACGGGTTGTCCAGGTCGTCTAAGGAGGGGCGGACCGGCCCAGGGGGGAAACCCAGCAGGCAAAAGTCCTTTATCG]
[+] EMBL CD112334             [  AGGCA AAAGTCCTTGATCGGGCGTCCACGCTAAGCACGGCGCCGATATGGATGAGCTGTCGGAGGACGGGTTGTCCAGGTCGTCTAAGGAGGGGCGGACCGGCCCAGGGGGGAAACCCAGCAGGCACAAG          ]




>consensus_10811#2
GCAGGCAGAATGTCCTTGATCGGGCGTCCACGCTAAGCACGGCGCCGATATGGATGAGCT
GTCGGAGGACGGGTTGTCCAGGTCGTCTAAGGAGGGGCGGACCGGCCCAGGGGGGAAACC
CAGCAGGCAAAAGTCCTTTATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10811#0      TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCAT 60
consensus_10811#1      ----------------------CAGTATCAGGACAACC-GTCCTCCGACAGCTCATCCAT 37
consensus_10811#2      ----------------------------GCAGGCAGAATGTCCTT-GATCGGGCGTCCAC 31
                                                      * **    *****  **  *  * **** 

consensus_10811#0      ATCG-GCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTC 119
consensus_10811#1      ATCG-GCGCCGTGCTTAGCGTGGACGCCCGATCAACTTCACAGGCGCTATCCCGCTACCG 96
consensus_10811#2      GCTAAGCACGGCGCC-GATATGGATGAGCTGTCG----GAGGACGGGTTGTCCAGGTCGT 86
                            ** * * **      **** *  *  **      *       *   **    *  

consensus_10811#0      CCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGCCAC 179
consensus_10811#1      CACCACGCGGGGACTTTTGCCTGCTGGGTTTCCCCC--CTGGGCC---GGTCCGCCCC-- 149
consensus_10811#2      CTAAGGAGGGGCGGACCGGC--CCAGGGGGGAAACCCAGCAGGCAAAAGTCCTTTATCG- 143
                       *         *       **   * **              *      *        *  

consensus_10811#0      CA 181
consensus_10811#1      --
consensus_10811#2      --