These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10811#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 181 fasta sequence [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGCCACCA] [+] EMBL CD072814 [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGATGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGC ] [+] EMBL CD072696 [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA ] [+] EMBL CD072704 [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA ] [+] EMBL CD072708 [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA ] [+] EMBL CD072714 [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA ] [+] EMBL CD072718 [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA ] [+] EMBL CD072847 [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA ] [+] EMBL CD072857 [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA ] [+] EMBL CD072866 [TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA ] [+] EMBL CD071664 [TGGGCCGGTCTGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA ] [+] EMBL CD072848 [TGGGCCGGTCCGCCCCTCCTTAGACGACCCGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCA ] [+] EMBL CD072682 [TGGGCCGGTCCGCCCCTCTTTAGACGACCTGGACAATCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGA ] [-] EMBL CD112300 [ GGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATAACAGGCGCAC ] [-] EMBL CD071570 [ GGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCAC ] [+] EMBL CD155889 [ CCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGCCACC ] [+] EMBL CD089874 [ CCTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGCCACC ] [-] EMBL CD118510 [ CTGGACAACCCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGCCACCA] [-] EMBL CD119737 [ TGGACAACCCGTCCTCCAACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTC ] [-] EMBL CD071724 [ ctTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTCCCGGTCCCGCGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCAC ] consensusID : consensus_10811#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence [CAGTATCAGGACAACCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACTTCACAGGCGCTATCCCGCTACCGCACCACGCGGGGACTTTTGCCTGCTGGGTTTCCCCCCTGGGCCGGTCCGCCCC] [+] EMBL CD150501 [CAGTATCAGGACAACCGTCCTCCGACAGCTCATCCATATCGGCGCCGTGCTTAGCGTGGACGCCCGATCAACTTCACAGGCGCTATCCCGCTACCGCACCACGCGGGGACTTTTGCCTGCTGGGTTTCCCCCCTGGGCCGGTCCGCCCC] consensusID : consensus_10811#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 143 fasta sequence [GCAGGCAGAATGTCCTTGATCGGGCGTCCACGCTAAGCACGGCGCCGATATGGATGAGCTGTCGGAGGACGGGTTGTCCAGGTCGTCTAAGGAGGGGCGGACCGGCCCAGGGGGGAAACCCAGCAGGCAAAAGTCCTTTATCG] [+] EMBL CD112109 [GCAGGCAGAATGTCCTTGATCGGGCGTCCACGCTAAGCACGGCGCCGATATGGATGAGCTGTCGGAGGACGGGTTGTCCAGGTCGTCTAAGGAGGGGCGGACCGGCCCAGGGGGGAAACCCAGCAGGCAAAAGTCCTTTATCG] [+] EMBL CD112334 [ AGGCA AAAGTCCTTGATCGGGCGTCCACGCTAAGCACGGCGCCGATATGGATGAGCTGTCGGAGGACGGGTTGTCCAGGTCGTCTAAGGAGGGGCGGACCGGCCCAGGGGGGAAACCCAGCAGGCACAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10811#0 TGGGCCGGTCCGCCCCTCCTTAGACGACCTGGACAACCCGTCCTCCGACAGCTCATCCAT 60 consensus_10811#1 ----------------------CAGTATCAGGACAACC-GTCCTCCGACAGCTCATCCAT 37 consensus_10811#2 ----------------------------GCAGGCAGAATGTCCTT-GATCGGGCGTCCAC 31 * ** ***** ** * * **** consensus_10811#0 ATCG-GCGCCGTGCTTAGCGTGGACGCCCGATCAACATGAGCACCCATATGCCAGAACTC 119 consensus_10811#1 ATCG-GCGCCGTGCTTAGCGTGGACGCCCGATCAACTTCACAGGCGCTATCCCGCTACCG 96 consensus_10811#2 GCTAAGCACGGCGCC-GATATGGATGAGCTGTCG----GAGGACGGGTTGTCCAGGTCGT 86 ** * * ** **** * * ** * * ** * consensus_10811#0 CCGGTCCCACGAAATCCCGCACCCTGGCCTCCAAGTAGCTAGATTACAGGCGCACGCCAC 179 consensus_10811#1 CACCACGCGGGGACTTTTGCCTGCTGGGTTTCCCCC--CTGGGCC---GGTCCGCCCC-- 149 consensus_10811#2 CTAAGGAGGGGCGGACCGGC--CCAGGGGGGAAACCCAGCAGGCAAAAGTCCTTTATCG- 143 * * ** * ** * * * consensus_10811#0 CA 181 consensus_10811#1 -- consensus_10811#2 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||