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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1552 fasta sequence
[CCTCGAGGGCCANAATTCGGTACGAGGCGTCATGATGCGGTTACCATAGACACCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAACGGATGCAGAATGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAGCGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGT-AAAAAATAAAAAATCAAGT-AAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAAT-CCATGGCTGTTGGTATTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTCTTCA-GATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAATACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTAATTTACCAATACAATTTTATCGCGGAAAAAAAAAAAAAAAAA]
[+] EMBL CD082452 [CCTCGAGGGCCANAATTCGGTACGAGGCGTCATGATGCGGTTACCATAGACACCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAACGGATGCAGAATGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGANATGAGATTATTATTAGACT ]
[-] EMBL CD155012 [ AGGTGGTGAGGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAACGGATGCAGAACGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCGGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTAT ]
[-] EMBL CD116220 [ AGTGCTTTCGGAATTGAATNTAGGTGATTNTGTCATCAAGATCAACCACAGACGTNTGCTTGATGGACTGTNTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAGCGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAGGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGTAAAAAAATAAAAAATCAAGTAAAAAAAGATAAGAA ]
[+] EMBL CD201615 [ CGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAGCGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCANATAGTCCAAGTGCAGAATTGACTGGTTTCCATGAAACTGACCAAAACTCCTCTGT AAAAAATAAAAAATCAAGT AAAAAAGATAAGAAAGCCAAAGAACAGGTAGAGGAGGAATCTGTTACATCTGGCGAAT TCATGGCTGTTGGTATTGTACCTGGTGGCGGC ]
[-] EMBL CD177945 [ TCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAGCGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACACTCCAAATAGTCCAAGTGCAGAATTGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGT AAAAAATAAAAAATCAAGT AAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAATACCATGGCTGT ]
[-] EMBL CD116539 [ ATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAGCGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAAATGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGT AAAAAATAAAAAATCAAGT AAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAAT CCATG ]
[-] EMBL CD168922 [ CGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGggg ]
[-] EMBL CD074727 [ TTCCAATGAAACTGACCTAAACTCCTCTGT AAAAAATAAAAAATCAAGT AAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAAT CCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTCTTCA GATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAATACCATAAATAAAACTTTGTT ]
[-] EMBL CD076050 [ TGTAGCTGGTGGCGGCCAATACGATGGTTTAGTGGGAATGTTTAGTTTTTTTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTTTTCA GATAAGAACAAATGTAGGGTGCGCCCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTTTTATCATGCAACGTTTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGGTCCAATGTCGCATAAAAATCCCCCCCAACTATTGGATCAACTCCAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTTTGGGAGAAAGTGAATTAGCTCGTAACCCTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACCCAGATTTTGTGAATAAGATCAAAAAAGTACTATTTACCAAATCCCATAAATAAAACTTTGTT ]
[-] EMBL CD075617 [ CGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTCTTCA GATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTTTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATTTACCAAATACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTAATTTACCAATACAATT ]
[-] EMBL AI395126 [ AGTGCC TGTGT GG TCTAGTTTT GGGTTGAA GGCTATTAGC ATTAAAGGAGCTTTGAGT ATT TTCAGGATAGGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGAGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAATACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTAATTTACCAATACAATTTTATCGCGGAAAAAAAAAAAAAAAA ]
[-] EMBL AI395425 [ cCACCTTTTATGGGATGCAAACTTTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAATACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTAATTTACCAATACAATTTTATCGCGGAAAAAAAAAAAAAAAAA]
[+] EMBL BG932187 [ ACGGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTGGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAATACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACG ]
consensusID : consensus_10814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 756 fasta sequence
[AAAATCACAGAGCAAATGGCCAAGTCATCCATCAAACAGTGTGAAGTGAAGTACAATGTAAAAACTCCGAAGGGAACAAGGGATCGTGATCCCATCCAAATGACAATTCTTGAAGATGTTTTTAGTACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACA-CCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAGCGGATGCAGAATGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCAT]
[+] EMBL CD147622 [AAAATCACAGAGCAAATGGCCAAGTCATCCATCAAACAGTGTGAAGTGAAGTACAATGTAAAAACTCCGAAGGGAACAAGGGATCGTGATCCCATCCAAATGACAATTCTTGAAGATGTTTTTAGTACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACA CCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAGCTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTG ]
[+] EMBL CD169613 [ CCATCAAACAGTGTGAAGTGAAGTACAATGTAAAAACTCCGAAGGGAACAAGGGATCGTGATCCCATCCAAATGACAATTCTTGAAGATGTTTTTAGTACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACA CCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATA ]
[-] EMBL CD097287 [ AGTGAAGTACAATGTAAAAACTCCCAAGGAAACAAGGGATCGTGATCCCATCCAAATGACAATTCTTGAAGATGTTTTTAGTACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACA CCCCTGTTTTTGAGTTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGC ]
[-] EMBL CD122964 [ ACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACACCCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAGCGGATGCAGAATGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCAT]
[+] EMBL AI977135 [ GAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAGCGGATGCAGAATGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGTGAAGATGTCAGACGA ]
consensusID : consensus_10814#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence
[AAGNAATTTCGGCACGAGGGAAAATCAAGTAAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTCTTCAGATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCANATACCATANATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTATTTNNACCATACATT]
[+] EMBL CD082004 [AAGNAATTTCGGCACGAGGGAAAATCAAGTAAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTCTTCAGATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCANATACCATANATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTATTTNNACCATACATT]
[+] EMBL CD144204 [ CAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCANATACCATAAATAAAACTTTGTTACAT ]
consensusID : consensus_10814#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[CGAGGCCAGAATTCGGCACGAGGGTTCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGNNNNNNNNAATTCTTCAGATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTAC]
[+] EMBL CD080895 [CGAGGCCAGAATTCGGCACGAGGGTTCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGNNNNNNNNAATTCTTCAGATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTAC]
consensusID : consensus_10814#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence
[CGCGGCCAAGAATTCGGTACGAGGCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATNCCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTT]
[+] EMBL CD077846 [CGCGGCCAAGAATTCGGTACGAGGCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATNCCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 CCTCGAGGGCCANAATTCGGTACGAGGCGTCATGATGCGGTTACCATAGACACCCCTGTT 60
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 TTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGAT 120
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 CTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCC 180
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 CGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTAC 240
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 CGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTC 300
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 GATATTGCTGGAGATCATGGGCTAATGCTAACGGATGCAGAATGCCTTCGAATAATGTAC 360
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 GAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTG 420
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 CTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCC 480
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 TCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGAC 540
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 AAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGT 600
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 TTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAA 660
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 GTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAG 720
consensus_10814#1 ------------------------------------------------------------
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 CGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTAC 780
consensus_10814#1 -------------------------------------------------------AAAAT 5
consensus_10814#2 ------------------------------------------------------------
consensus_10814#3 -----------------------------------CGAGGCCAGAATTCGGCACGAGGGT 25
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 GAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGACTGGT 840
consensus_10814#1 CACAGAGCAAATGGCCAAGTCATCCATCAAACAGTGTGAAGTGAAGTACAATGTAAAAAC 65
consensus_10814#2 ------------------AAGNAATTTCGGCACGAGGGAAAATCAAGTAAAAAAGATAAG 42
consensus_10814#3 TCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATNNN 85
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 TCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATAAG 900
consensus_10814#1 TCCGAAGGGAACAAGGGATCGTGATCCCATCCAAATGACAATTCTTGAAGATGTTTTTAG 125
consensus_10814#2 AAAGCCAAAGAACAGTTAGAGGA-GGAATCTGTTACATCTGGCGAATCCATGGCTGTTGG 101
consensus_10814#3 NNNNNNNNNNNNNNNNNNNNNNNAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGG 145
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 AAAGCCAAAGAACAGTTAGAGGA-GGAATCTGTTACATCTGGCGAATCCATGGCTGTTGG 959
consensus_10814#1 TACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACACCCCTGTTTTTGA 185
consensus_10814#2 TAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTA-----GTTCTTCT 156
consensus_10814#3 TAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTA-----GTTCTTCT 200
consensus_10814#4 -------------CGCGGCCAAGAATTCGGTACGAGGCGA---TTTA-----AGTCT--- 36
consensus_10814#0 TATTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTA-----GTTCTTCT 1014
consensus_10814#1 GCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCA 245
* * * *** * *** ***
consensus_10814#2 GGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATT--AGCAATTA 214
consensus_10814#3 GGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATT--AGCAATTA 258
consensus_10814#4 --AGCGCGCGGGTTGGATTACTATNCCGGTGTTA----TTTACGA-------AGCTGTTT 83
consensus_10814#0 GGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATT--AGCAATTA 1072
consensus_10814#1 GGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTA 305
* * * * * * * * **
consensus_10814#2 AAGAAGCTTTGA------GTAATTCTTCAGATAAGAACAAAT-GTAGCGTGCGACCAACT 267
consensus_10814#3 AAGAAGNNNNNN------NNAATTCTTCAGATAAGAACAAAT-GTAGCGTGCGACCAACT 311
consensus_10814#4 TGAAAGGTTTCA------CTTACAATCCAAATA-GTCCAAGT-GCAG-----AATTGACT 130
consensus_10814#0 AAGAAGCTTTGA------GTAATTCTTCAGATAAGAACAAAT-GTAGCGTGCGACCAACT 1125
consensus_10814#1 TGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCG 365
* ** *** * * * * *
consensus_10814#2 GAAACTGAAGTCATGGTTGCTGGA--GCTCATAAGGGTCTTATCA-TGCAACGTCTACAA 324
consensus_10814#3 GAAACTGAAGTCATGGTTGCTGGA--GCTCATAAGGGTCTTATCA-TGCAACGTCTACAA 368
consensus_10814#4 GGTTCCAA------------TGAA--ACTGACCTAAACTCCTCTG-TAAAAAATAAAAAA 175
consensus_10814#0 GAAACTGAAGTCATGGTTGCTGGA--GCTCATAAGGGTCTTATCA-TGCAACGTCTACAA 1182
consensus_10814#1 TGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATAT 425
* * * * * * *
consensus_10814#2 TGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCC 384
consensus_10814#3 TGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAANNNNNNNNNN 428
consensus_10814#4 TCAAGTAAAA------AAGATAAGAAAGCCAAAGA-ACAGT-TAGAGGAGGAATCTGTTA 227
consensus_10814#0 TGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCC 1242
consensus_10814#1 TGCTGGAGATC---ATGGGCTAATGCTAGCGGATGCAGAATGCCTTCGAATAATGTACGA 482
* * * * * * * * *
consensus_10814#2 AAA-CTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGT-TGGCCGTTGTTC 442
consensus_10814#3 NNN-NNNNNNNNNNNNNNNNNGTATTGTGAATCAACTGGTATTCCGT-TGGCCGTTGTTC 486
consensus_10814#4 CAT-CTGGCGAATCCATGGCTGT-TGGTAGTGTAGCTGGTGGCGGCC-GATACGATGGTT 284
consensus_10814#0 AAA-CTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGT-TGGCCGTTGTTC 1300
consensus_10814#1 AGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCT 542
* * ** *
consensus_10814#2 TGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAG 502
consensus_10814#3 TGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAG 546
consensus_10814#4 TAGTGGGAAT--GTTTAGTTCTT------------------------------------- 305
consensus_10814#0 TGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAG 1360
consensus_10814#1 TGATGGACTGT-TTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCT 601
* * * * * *
consensus_10814#2 AATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCANAT 562
consensus_10814#3 AATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTAC----- 601
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 AATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAAT 1420
consensus_10814#1 CAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACA 661
consensus_10814#2 ACCATANATAAAACTTTGTTACATACCGTATTTGGCTGTGTGAT-GTTTTTCTGAATTTG 621
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 ACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGAT-GTTTTTCTGAATTTG 1479
consensus_10814#1 AAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTT 721
consensus_10814#2 TGCATCTCATAATCTGGTATTATTTGACGTATTTNNACCATACATT-------------- 667
consensus_10814#3 ------------------------------------------------------------
consensus_10814#4 ------------------------------------------------------------
consensus_10814#0 TGCATCTCATAATCTGGTATTATTTGACGTAATTTACCAATACAATTTTATCGCGGAAAA 1539
consensus_10814#1 TGGATCTCGTTGAACGTCTCGAATCAGATGAGCAT------------------------- 756
consensus_10814#2 -------------
consensus_10814#3 -------------
consensus_10814#4 -------------
consensus_10814#0 AAAAAAAAAAAAA 1552
consensus_10814#1 -------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||