These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10821#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 685 fasta sequence [ATGAAATACTTTTTCCATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA-AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGAAACACTTGAACCAGG-AAAATTAGAATCATTTTTCGAAAGTACCCTAGGAAACATTTAGCACAAGCCTTGGTCAAAAGTGGGTCANAGAACTGTGTTCATTGCGGAGAAATTTATTTATTCAGTGTGAATCTAGTGATACTTAAAGGTGGCTAGCAAGTGCCTCAATTTTTACNAGACTTCTAAATGATGCTCTTTTTCTATGCATTTAAATACTTCTTC] [+] EMBL CD140309 [ATGAAATACTTTTTCCTAGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTT ] [+] EMBL CD140239 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAATTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGT ] [+] EMBL CD140199 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAGCTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTACTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTAT ] [+] EMBL CD140179 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTAATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGGAAAAGATGCAATGAAACAATTATGT ] [+] EMBL CD140241 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTCAAG ] [+] EMBL CD196331 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTAGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTCAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGNAGTATCGA AAGAAGAAAAACTATCCAGAGAANAAGATGCAATGAAGCAATTATGT ] [+] EMBL CD140218 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTT ] [+] EMBL CD140244 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGGAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAGTGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATTCCATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGg ] [+] EMBL CD140308 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCCATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGA ] [+] EMBL CD140250 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGT ] [+] EMBL CD140313 [ ATGGATGTGCGATTCACATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAGACGAACTGTTCGAACTGGTTGGACACGTTACGACATATACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTTATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTACCTAAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGATAAGAAGAAAAACTATCCAGAGAAAATGATGCTATGAAACTGTTGTGT ] [-] EMBL CD140197 [ TGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTATGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTG ] [-] EMBL CD140232 [ TGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTG ] [-] EMBL CD196293 [ TGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACNACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTG ] [-] EMBL CD140156 [ TGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGCGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTG ] [+] EMBL CD188864 [ GATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAGAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAG AAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGA ] [+] EMBL CD140219 [ atgCGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGGAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTT ] [-] EMBL CD140161 [ GAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTACGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGAAACACTTGAACCAGG AAAATTAGAATCATTTTTCGAAAGTACCCTAGG ] [-] EMBL CD140140 [ CTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGAAACACTTGAACCAGG AAAATTAGAATCATTTTTCGAAAGTACCCTAGG ] [-] EMBL CD196315 [ CTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCNCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTG ] [+] EMBL AA559653 [ GAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGAAACACTTGAACCAGGAAAAATTAGAATCATTTTTCGAAAGTACCCTAGGAAACATTTAGCACAAGCCTTGGTCAAAAGTGGGTCANAGAACTGTGTTCATTGCGGAGAAATTTATTTATTCAGTGTGAATCTAGTGATACTTAAAGGTGGCTAGCAAGTGCCTCAATTTTTACNAGACTTCTAAATGATGCTCTTTTTCTATGCATTTAAATACTTCTTC] consensusID : consensus_10821#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [TAATCATTATAATAAGGAAGTTACCTTCCACAGACCCATAATTTCCGTCCTGTTTTCTTCTGAAATAAGTTCACATAATTGTTTCATTGCATCCTACAAAATAAATTACCAAGGAACTAGGGATACAACACTTACGCATGAAGATGTAATTTCGACTGTTGTAAAGTAGTCAGGAGTACAGCGGACCTAGGTTTAGTGCTAGTTGACATTCGTCAGAGACTTTGAAGAAAATGATGCTCCCTGTGAAATTAGTATCTACGTCCTTTAGCTCTACAGTCAGAAACGTTATCGTCGAACTATTGAGGTCTCGACTAACATCCCATAAGACTGATATATTTATAACTTATTTATTTAAACACATAAACATGGGTAAAAGGAAGCATCAAATATATATGCGCTACACAAATCACTCGACTTGTATGAGAACTGGAATACTGCCCGGG] [+] EMBL CD132957 [TAATCATTATAATAAGGAAGTTACCTTCCACAGACCCATAATTTCCGTCCTGTTTTCTTCTGAAATAAGTTCACATAATTGTTTCATTGCATCCTACAAAATAAATTACCAAGGAACTAGGGATACAACACTTACGCATGAAGATGTAATTTCGACTGTTGTAAAGTAGTCAGGAGTACAGCGGACCTAGGTTTAGTGCTAGTTGACATTCGTCAGAGACTTTGAAGAAAATGATGCTCCCTGTGAAATTAGTATCTACGTCCTTTAGCTCTACAGTCAGAAACGTTATCGTCGAACTATTGAGGTCTCGACTAACATCCCATAAGACTGATATATTTATAACTTATTTATTTAAACACATAAACATGGGTAAAAGGAAGCATCAAATATATATGCGCTACACAAATCACTCGACTTGTATGAGAACTGGAATACTGCCCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10821#0 ATGAAATACTTTTTCCATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTG 60 consensus_10821#1 ------------------------------------------------------------ consensus_10821#0 GGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAA 120 consensus_10821#1 ------------------------------------------------------------ consensus_10821#0 GTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAAC 180 consensus_10821#1 ------------------------------------------------------------ consensus_10821#0 GTGAAAATTTAAACACAAATCGAT-TAATAAAAATGGCAATTGTGCATGATTTAGCTGAA 239 consensus_10821#1 ----------------TAATCATTATAATAAGGA-AGTTACCTTCCACAGACCCATAATT 43 **** * ****** * * * * ** consensus_10821#0 TGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGAAAGAAGAAAAACTATCCAGA 299 consensus_10821#1 TCCGTCCTGTTTTCTTCTGAAATAAGTT-CACATAATTGTTTCATTGCATCCTA--CAAA 100 * ** ** * * * * * ** * ** * * * *** ** * consensus_10821#0 GAAAAAGATGCAATGAAACAATTATGTGA-ACTTATTTCAGAAGAAAACAGGACGGAAAT 358 consensus_10821#1 ATAAATTAC-CAAGGAACTAGGGATACAACACTTACGCATGAAGATGTAATTTCGACTGT 159 *** * *** *** * ** * ***** ***** * ** * consensus_10821#0 TATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGT-AAAG 417 consensus_10821#1 TGTAAAGTAGTCAGGAGTACA-GCGGACCTAGGTTTAGTGCTAGTTGACATTCGTCAGAG 218 * * * ** * * * * ** * * * * *** ** * ** consensus_10821#0 ATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGAAACACTTGAAC 477 consensus_10821#1 ACTTTGAAGAAAATGATGCTCCCTGTGAAATTAGTATCTACGTCCTTTAG-CTCTACAGT 277 * ***** ** *** * ** * * * ** * * * * * ** * consensus_10821#0 CAGGAAAATTAGAATCATTTTTCGAAAGTACCCTAGGAAACATTTAGCACAAGCCTTGGT 537 consensus_10821#1 CAGAAACGTTATCGTCGAACTATTGAGGT--CTCGACTAACATCC--CATAAGACT---- 329 *** ** *** ** * * ** * ***** ** *** ** consensus_10821#0 CAAAAGTGGGTCANAGAACTGTGTTCATTGCGGAGAAATTTATTTATTCAGTGTGAATCT 597 consensus_10821#1 ----GATATATT-TATAACT-TATTTATT-TAAACACATAAACATGGGTAAAAGGAAGC- 381 * * * **** * ** *** * * ** * * * *** * consensus_10821#0 AGTGATACTTAAAGGTGGCTAGCAAGTGCCTCAATTTTTACNAGACTTCTAAATGATGCT 657 consensus_10821#1 -ATCAAATATATATGCGCTACACAAATCACTCGACTTGTATGAGAACTG-GAATACTGCC 439 * * * ** * * * *** * *** * ** ** *** * *** *** consensus_10821#0 CTTTTTCTATGCATTTAAATACTTCTTC 685 consensus_10821#1 CGGG------------------------ 443 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||