These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1459 fasta sequence [CTTCTTTCCTGCCACTTGACGTCGAATTGTTTTGTAGTTTGGATTCTAAGATTTGTCAT-ATCTTAGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGCGGATAAGGCTTGTTGGTTGATTCGTGCGGTATATGATTCCAAAGACTTGGCCATTATAGACAAAGGAGTTGATGATTTGCAATCCAGAGCTGATCGAGATTCTCAGAGGTGCATAGTACAATCCTTGAATGAGATCTTCCCAGGTCTTCATGTTATTGGTGAAGAAGGTGATTTGGATCCTGGAAATCTACCTCGATCCACTGAATTAAACTTAGCTGTTCTTGAGTACCAATGTCCTCCAGAACTAAAAGATTGTTCACTGGATGATATTGTAGTTTGGGTGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCAAAATTGCCATATCCAATCAACCAAAATGCCCAAAAACTTACTTCACCTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCGCAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTAATGCTAAACATGATAATCTTCGAGGCATACTTGCTACTCCTGTCGCCGATTGGTTACCATCATATGTTTCTTGTTTGCCAAAGGAAGTGCTTGATGATTTCTCAGCTCGTGATTAGCTAATACTAAATCCTATTGTTTTGTTTATTATTATTGACTTTGTTCAATATTAGATGTATAGTACAACATAGAAGTGCTTATCATTCCATACATCTCCCGTGCGTTTATGTGAACATGCTTTTCTCTTCGCTGTTCCGTATTCGTATTTCATTTAC-TTGAT-ACAGTGATTATATTATATTCTATATCATCCATAGATTGATTTGTATGTACTAAATGTGNNGA-TATTTTTTTCCTTTTGATTATTTCTGGCAATGTTATAGATGTTTTAANAATANTGATTATTTGAACGAGTATTC-ATGTATCCA-GTGGCCACTTTTCGGGTGAAT-AATTGTTTTTGTTGGCTGAAAATCATTTATTATTGTAATCCAACTAATTGGGTTCTTTGAAGTCCAAATAGTTCCGATTGAATG] [+] EMBL CD202586 [CTTCTTTCCTGCCACTTGACGTCGAATTGTTTTGTAGTTTGGATTCTAAGATTTGTCATGATCTTAGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGCGGATAAGGCTTGTTGGTTGATTCGTGCGGTATATG ] [+] EMBL CD067464 [ TTTTTCAT TTCGAAGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGCGGATAAGGCTTGTTGTTTGATTCGTGCGGTATATGATTCCAAAGACTTGGCCATTATAGACAAAGGAGTTGATGATTT ] [+] EMBL CD202219 [ ATTCCAAAGACTTGGCCATTATAGACAAAGGAGTTGATGATTTGCAATCCAGAGCTGATCGAGATTCTCAGAGGTGCATAGTACAATCCTTGAATGAGATCTTCCCAGGTCTTCATGTTATTGGTGAAGAAGGTGATTTGGATCCTGGAAATCTACCTCGATCCACTGAATTAAACTTAGCTGTTCTTGAGTACCAATGTCCTCCAGAACTAAAAGATTGTTCACTGGATGATATTGTAGTTTGGGTGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTAC ] [+] EMBL AI067950 [ AACTTAGCTGTTCTTGAGTACCAATGTCCTCCAGAACTAAAAGATTGTTCACTGGATGATATTGTAGTTTGGGTGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCAAAATTGCCATATCCAATCAACCAAAATGCCCAAAAACTTACTTCACCTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCGCAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACA ] [+] EMBL CD181982 [ AAGGAATTTACTGAGGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTCACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCA ] [+] EMBL CD079374 [ gaggCCGAACTAT CAACTCGGATCGTTTGGGGACTTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCAAAATTGCCATATCCAATCAACCAAAATGCCCAAAAACTTACTTCACCTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCGCAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTAATGCTAAACATGATAATCTTCGAGGCATACTTGCTACTCCTGTCGCCGATTGGTTACCATCATATGTTTCTTGTTTGCCAAAGGAAGTGCTTGATGATTTCTCAGCTCGTGATTAGCTAATACTAAATCCTATTGTTTTGTTTATTATTATTGACTTTGTTCAATATTAGATGTATAGTACAACATAGAAGTGCTTATCATTCCATACATCTCCCGTGCGTTTATGTGAACATGCTTTTCTCTTCGCTGTTCCGTATTCGTATTTCATTTACTTTGAT ACAGTGATTATATTATATTCTATATCATCCATAGATTGATTTGTATGTACTAAATGTGNNGA TATTTTTTTCCTTTTGATTATTTCTGGCAATGTTATAGATGTTTTAANAATANTGATTATTTGAACGAGTATTC ATGTATCCA GTGGCCACTTTTCGGGTGAAT AATTGTTTTT ] [-] EMBL CD114689 [ GGATCGTTTGGGGACTTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCAAAATTGCCATATCCAATCAACCAAAATGCCCAAAAACTTACTTCACCTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCGCAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAATAGATTTAACTGGACAACCTTACAAATACGATCTTAATGCTAAACATGATAATCTTCGAGGCAT ] [-] EMBL CD136901 [ tacCCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCGCAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATNTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTAATGCTAAACATGATAATCTTCGAGGCATACTTGCTACTCCTGTCGCCGATTGGTTACCATCATATGTTTCTTGTTTGCCAAAGGAAGTGCTTGATGATTTCTCAGCTCGTGATTAGCTAATACTAAATCTTATTGTTTTGTTTACTATTATTGACTTTGTTCAATATTAGATGTATAGTACAACATAGAAGTGCTTATCATTCCATACATCTCCCGTGCGTTTATGTGAACATGCTTTTCTATTCGTTGTTCCGTATTCGTATTTCATTTAC TTGATAACAGTGATTATATTATATTCTATATCATCCATAG ] [-] EMBL BF936115 [ AACATGATAATCTTCGAGGCATACTTGCTACTCCTGTCGCCGATTGGTTACCATCATATGTTTCTTGTTTGCCAAAGGAAGTGCTTGATGATTTCTCAGCTCGTGATTAGCTAATACTAAATCCTATTGTTTTGTTTATTATTATTGACTTTGTTCAATATTAGATGTATAGTACAACATAGAAGTGCTTATCATTCCATACATCTCCCGTGCGTTTATGTGAACATGCTTTTCTCTTCGCTGTTCCGTATTCGTATTTCATTTAC TTGATAACAGTGATTATATTATATTCTATATCATCCATAGATTGATTTGTATGTACTAAATGTG TGATTATTTTTTT CTTTTGATTATTTCTGCAAATGTTATAGATGTTTTAAAAATAGTGATTATTTGAACGAGTATTCAATGTATCCAGGTGCACACTTTTCGGGTGTATAAATTGTTTTTGTTGGCTGAAAATCATTTATTATTGTAATCCAACTAATTGGGTTCTTTGAAGTCCAAATAGTTCCGATTGAATG] consensusID : consensus_10828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 628 fasta sequence [TACATCTATTCCAGAGTGTGAATATAAACAGTTTATAAGCTGATTAATTCATCTAGAATTTATTCATTCGATTTCATTACAATCTACTGTACCACCATATTACTAAGATGGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGGAAGATTAAATTATGAAGAATTTATTGAATTTGTTTCACAATATTTATGAATATAAATATATATAACTTTTTACTTCAGTCCTTACTAATGATCATATTCAACAAGTACATTTTCAGTGAATAACAATGTAGCTATGGA] [+] EMBL CD169359 [TACATCTATTCCAGAGTGTGAATATAAACAGTTTATAAGCTGATTAATTCATCTAGAATTTATTCATTCGATTTCATTACAATCTACTGTACCACCATATTACTAAGATGGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACA ] [+] EMBL CD136873 [ cccttCATATTACTAAGATGGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTCTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGG ] [+] EMBL CD169977 [ TGGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAGTGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGCACTATTTCAAAGCAAGAATT AAAAATTATATG AAAGTGATTGTAATTTTATATTT CTATACAAGTTGATCAATGNGTTGATAAATATGATAAAAATAAAGATGGNAG ] [+] EMBL CD136700 [ TGGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAGAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGG ] [-] EMBL CD137260 [ GGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGGA ] [-] EMBL CD137310 [ GGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGGA ] [-] EMBL CD137207 [ GGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTACGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATGAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGGA ] [-] EMBL CD063091 [ AAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGGAAGATTAAATTATGAAGAATTTATTGAATTTGTTTCACAATATTTATGAATATAAATATATATAACTTTTTACTTCAGTCCTTACTAATGATCATATTCAACAAGTACATTTTCAGTGAATAACAATGTAGCTATGGA] consensusID : consensus_10828#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence [CCTTGAATGAGATCTTCCCAGGTCTTCATGTTATTGGTGAAGAAGGTGATTTGGATCCTGGAAATCTACCTCGATCCACTGAATTAAACTTAGCTGTTCTTGAGTACCAATGTCCTCCAGAACTAAAAGATTGTTCACTGGATGATATTGTAGTTTGGGTGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGTATGTTTATTTATTTGGTTTTTATTCATGATATCACGTAAAATACAACCATATAATAACAGTAGATGTTCATGCATAGTTTTGAACTCTTAAGTAAAATTAATTTTTCCTGTGTACGTGCTTCTTCTGAATCCAGGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTA-GTCTGGGTGTATTTGGCGTAAATCCCTGCTACCTTCTTCAAGATTCAACTCCACAGCCTCT] [-] EMBL CD126595 [CCTTGAATGAGATCTTCCCAGGTCTTCATGTTATTGGTGAAGAAGGTGATTTGGATCCTGGAAATCTACCTCGATCCACTGAATTAAACTTAGCTGTTCTTGAGTACCAATGTCCTCCAGAACTAAAAGATTGTTCACTGGATGATATTGTAGTTTGGGTGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGTATGTTTATTTATTTGGTTTTTATTCATGATATCACGTAAAATACAACCATATAATAACAGTAGATGTTCATGCATAGTTTTGAACTCTTAAGTAAAATTAATTTTTCCTGTGTACGTGCTTCTTCTGAATCCAGGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTA GTCTGGGTGTATTTGGCGTAAATCCCTGCTACCTTCTTCAAGATTCAACTCCACAGCCTCT] [+] EMBL CD093383 [ GAATTTACTGAAGTATGTTTATTTATTTGGTTTTTATTCATGATATCACGTAAAATACAACCATATAATAACAGTAGATGTTCATGCATAGTTTTGAACTCTTAAGTAAAATTAATTTTTCCTGTGTACGTGCTTCTTCTGAATCCAGGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTAGGTCTGGGTGTA ] consensusID : consensus_10828#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [ACCTTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGATCTTCGCGCAGGGGGGTGAGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTATTGCTAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTGCGCGAAATGGATAAAATTAAAGATAGAACTATGTCATAGCAAGAATTAGAAAATTATCTGACAAGTGATTGTAATTTTATATATCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGG] [+] EMBL CD137024 [ACCTTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGATCTTCGCGCAGGGGGGTGAGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTATTGCTAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTGCGCGAAATGGATAAAATTAAAGATAGAACTATGTCATAGCAAGAATTAGAAAATTATCTGACAAGTGATTGTAATTTTATATATCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGG] consensusID : consensus_10828#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [TCAAACGGTCATAAAACTGATATGAATAACTATGATGCATTAAAGAAAAGATATCTCTTAAAGAATTTACTGATCGTAAAAATTCTAGTAAAATTATACAATCTGAATCATTCAATACCCATAGTCCAATGGAACAAATTCGTTATTGGCGTTCAGTCGCTGAAATGGCTCAAGCTAATGCAGCAGGCCAATTAGCTAAAACTGAAAAATTAACTCAAGAATTAGCTAGATTACGTTGGGACTTAAGTATATCACATATGGAAAATAATTTATTACGTCAAAATTTAGCATCTGTTCAAGCGGAATTAAATCATATTCGTCAAATTCCCAAAGATATTACAAATTATGCTCAACATAATGAAAGTATGCATCGAGCATTATATCCTTAACTCGTATGATATTTAA] [+] EMBL CD137241 [TCAAACGGTCATAAAACTGATATGAATAACTATGATGCATTAAAGAAAAGATATCTCTTAAAGAATTTACTGATCGTAAAAATTCTAGTAAAATTATACAATCTGAATCATTCAATACCCATAGTCCAATGGAACAAATTCGTTATTGGCGTTCAGTCGCTGAAATGGCTCAAGCTAATGCAGCAGGCCAATTAGCTAAAACTGAAAAATTAACTCAAGAATTAGCTAGATTACGTTGGGACTTAAGTATATCACATATGGAAAATAATTTATTACGTCAAAATTTAGCATCTGTTCAAGCGGAATTAAATCATATTCGTCAAATTCCCAAAGATATTACAAATTATGCTCAACATAATGAAAGTATGCATCGAGCATTATATCCTTAACTCGTATGATATTTAA] consensusID : consensus_10828#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [TCCATCTTTATTTTTATCATATTTATCAACCCATTGATCAACTTGTATAGGAAATATAAAATTACAATCACTTTTCATATAATTTTTTAATTCCGCTTGAACAGATGCTAAATTTTGACGTAATAAATTATTTTCCATATGTGATATACTTAAGTCCCAACGTAATCTAGCTAATTCTTGAGTTAATTTTTCAGTTTTAGCTAATTGACCTGCTGCATTAGCTTGAGCCATTTCAGCGACTGAACGCCAATAACGAATTTGTTCCATTGGACTATGGGTATTGAATGATTCAGATTGTATAATTTTACTAGAATTTTTACGATCAGTAAATTCTTTAAGAGATATTCTTTTCTTTAATGCATCATAGTTATTCATATCAGTTTTATGACCGTTTG] [+] EMBL CD137000 [TCCATCTTTATTTTTATCATATTTATCAACCCATTGATCAACTTGTATAGGAAATATAAAATTACAATCACTTTTCATATAATTTTTTAATTCCGCTTGAACAGATGCTAAATTTTGACGTAATAAATTATTTTCCATATGTGATATACTTAAGTCCCAACGTAATCTAGCTAATTCTTGAGTTAATTTTTCAGTTTTAGCTAATTGACCTGCTGCATTAGCTTGAGCCATTTCAGCGACTGAACGCCAATAACGAATTTGTTCCATTGGACTATGGGTATTGAATGATTCAGATTGTATAATTTTACTAGAATTTTTACGATCAGTAAATTCTTTAAGAGATATTCTTTTCTTTAATGCATCATAGTTATTCATATCAGTTTTATGACCGTTTG] consensusID : consensus_10828#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence [GAGGGTTGCATGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGCGGATAAGGCTTGTTGTTTGATTCGTGCGGTATATGATTCCAAAGACTTGGCCATTATAGACAAAGGAGTTGATGATTTGCAATCCAGAGCTGATCGAGATTCTCAGAGGTGCATAGTACAATCCTTGATGAGATCTTCCCAGG] [+] EMBL CD078006 [GAGGGTTGCATGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGCGGATAAGGCTTGTTGTTTGATTCGTGCGGTATATGATTCCAAAGACTTGGCCATTATAGACAAAGGAGTTGATGATTTGCAATCCAGAGCTGATCGAGATTCTCAGAGGTGCATAGTACAATCCTTGATGAGATCTTCCCAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10828#0 CTTCTTTCCTGCCACTTGACGTCGAATTGTTTTGTAGTTTGGATTCTAAGATTTGTCATA 60 consensus_10828#6 -----------------------------------------------GAGGGTTG-CAT- 11 consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------TACATCTATTCCAGAGTGTGAATATAAACA 30 consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 TCTTAGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGC 120 consensus_10828#6 -----GAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGC 66 consensus_10828#2 ---------------------CCTTGA-ATGAGATCTTCCCAGGTCTTCATGTTATTGGT 38 consensus_10828#1 GTTTATAAGCTGATTAATTCATCTAGAATT-TATTCATTCGATTTCATTACAATCTACTG 89 consensus_10828#3 ----------------ACCTTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACT 44 consensus_10828#5 -------------------------TCCATCTTTATTTTTATCATATTTATCAACCCATT 35 consensus_10828#4 ------------------------------------------TCAAACGGTCATAAAACT 18 consensus_10828#0 GGATAAGGCTTGTTGGTTGATTCGTGC-----GGTATATGATTCCA-AAGACTTGGCCAT 174 consensus_10828#6 GGATAAGGCTTGTTGTTTGATTCGTGC-----GGTATATGATTCCA-AAGACTTGGCCAT 120 consensus_10828#2 GAAGAAGG----TGATTTGGATCCTG------GAAATCTACCTCGA-TCCACTGAAT--- 84 consensus_10828#1 TACCACCATATT-ACTAAGATGGCTGT---AATGTATGTACTTGAACGAGAATTCGACAG 145 consensus_10828#3 CATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGATCTTCGCGCAGGGGGGTGAGGT 104 consensus_10828#5 GATCAACTTGTATAGGAAATATAAAAT-----TACAATCACTTTTCATATAATTTTTTAA 90 consensus_10828#4 GATATGAATAACTATGATGCATTAAAG-----AAAAGATATCTCTTAAAGAATTTACTGA 73 * consensus_10828#0 TATAGACAAAGGAGTTGATGATTTGCAAT-------CCAGAGCTGATCGAGATT-CTCAG 226 consensus_10828#6 TATAGACAAAGGAGTTGATGATTTGCAAT-------CCAGAGCTGATCGAGATT-CTCAG 172 consensus_10828#2 --TAAACTTAGCTGTTCTTGAGTACCAATGTCCT--CCAGAACTAA--AAGATTGTTCAC 138 consensus_10828#1 TGTTGATAAAAATTCTGATGGATTTCTAAGTAGG-GCTGAAATTATTGGCTGTTTGGAAC 204 consensus_10828#3 TAC-----AAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATG--TATTTCCTA- 156 consensus_10828#5 TTCCGCTTGAACAGATGCTAAATTTTGACGTAAT-----AAATTATTTTCCATATGTGAT 145 consensus_10828#4 TCG---TAAAAATTCTAGTAAAATTATACAA-----TCTGAATCATTCAATACCCATAGT 125 * * * * consensus_10828#0 AGGTGCATAGTACAATCCTTGAA--TGAGATCTTCCCAGGTCTTCATGTTATTGGTGAAG 284 consensus_10828#6 AGGTGCATAGTACAATCCTTGA---TGAGATCTTCCCAGG-------------------- 209 consensus_10828#2 TGGATGATATTGTAGT--TTGGG--TGGA---TCCGCTGGATGGTACAAAGGAATTTACT 191 consensus_10828#1 GTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAG 264 consensus_10828#3 GCCAAGGTACTAAAAAGTGGGATAC--ATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGG 214 consensus_10828#5 ATACTTAAGTCCCAAC--GTAAT--CTAGCTAATTCTTGAGTTAATTTTTCAGTTTTAGC 201 consensus_10828#4 CCAATGGAAC--AAATTCGTTATTGGCGTTCAGTCGCTGAAATGGCTCAAGCTAATGCAG 183 consensus_10828#0 AAGGTGATTTGGATCCTGGAAATCTACCTCGATCCACTGAATTAAACTTAGCTGTTCTTG 344 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 GAAGTATGTTTATTTATTTGGTTTTTATTCATGATATCACGTAAAATACAACCATATAAT 251 consensus_10828#1 ATGGGAAAATATCCAAAAATGAATTCATGAAAGCTA-CAAATAAGAAACTTTCAC-AAAC 322 consensus_10828#3 -TGGGATACTAAC--AGATTTAACTGGACAACCTTA-CAAATACGATCTTATTGCTAAAC 270 consensus_10828#5 TAATTGACCTGCT--GCATTAGCTTGAGCCATTTCAGCGACTGAACGCCAATAACGAATT 259 consensus_10828#4 CAGGCCAATTAGCTAAAACTGAA--AAATTAACTCAAGAATTA--GCTAGATTACGTTGG 239 consensus_10828#0 AGTACCAATGTCCTCCAGAACTAAAAGATT-GTTCACTGGATG--ATATTGTAGTTTGGG 401 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 AACAGTAGATGTTCATGCATAGTTTTGAAC-TCTTAAGTAAAA--TTAATTTTTCCTGTG 308 consensus_10828#1 TGATGTATCATGTGCTGCATTAAGAAAAA--TATTTCGTGAAA--TGGATAAAAATAAAG 378 consensus_10828#3 TGATGTATCATGTGCTGCATTAAGAAAAA--TATTGCGCGAAA--TGGATAAAATTAAAG 326 consensus_10828#5 TGTTCCATTGGACTATGGGTATTGAATGA---TTCAGATTGTA--T-AATTTTACTAGAA 313 consensus_10828#4 GACTTAAGTATATCACATATGGAAAATAATTTATTACGTCAAAATTTAGCATCTGTTCAA 299 consensus_10828#0 TGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGGCCTTATTGAGTTTGTTACAGTTC 461 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 TACGTGCTTCTTCTGA-------------ATCCAGGGCCTTATTGAGTTTGTTACAGTTC 355 consensus_10828#1 ATAGAACTATTTCAAA---------------GCAAGAATTAAAAAATTATATGAAAAGTG 423 consensus_10828#3 ATAGAACTATGTCATA---------------GCAAGAATTAGAAAATTATCTGACAAGTG 371 consensus_10828#5 TTTTTACGATCAGTAAA----------TTCTTTAAGAGATATTCTTTTCTTTAATGCATC 363 consensus_10828#4 GCGGAATTAAATCATAT--------------TCGTCAAATTCCCAAAGATATTACAAATT 345 consensus_10828#0 TTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACA 521 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 TTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACA 415 consensus_10828#1 ATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATA 483 consensus_10828#3 ATTGTAATTTTATATATCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATA 431 consensus_10828#5 ATAGTTAT-TCATATCAGTTTTATGACCGTTTG--------------------------- 395 consensus_10828#4 ATGCTCAA--CATAATGAAAGTATGCATCGAGCATTATATCCTTAACTCGTATGATATTT 403 consensus_10828#0 AAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGAC 581 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 AAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGAC 475 consensus_10828#1 AAGATGGAAGATTAAATTATGAAGAATTTATTGAATTTGTTTCACAATATTTATGAATAT 543 consensus_10828#3 AAGATGG----------------------------------------------------- 438 consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 AA---------------------------------------------------------- 405 consensus_10828#0 TTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCAAAATTGCCATATC 641 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 TTGTAG-TCTGGGTGTATTTGGCGTAAATCCC-TGCTACCTTCTTCAAGATTCAACTCCA 533 consensus_10828#1 AAATATATATAACTTTTTACTTCAGTCCTTACTAATGATCATATTCAACAAGTACATTTT 603 consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 CAATCAACCAAAATGCCCAAAAACTTACTTCACCTCATATTATTGTGGTTACCCGATCCC 701 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 CAGCCTCT---------------------------------------------------- 541 consensus_10828#1 CAGTGAATAACAATGTAGCTATGGA----------------------------------- 628 consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 ATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCG 761 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 CAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTAT 821 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 TTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCAT 881 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 CTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTAATGCTAAAC 941 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 ATGATAATCTTCGAGGCATACTTGCTACTCCTGTCGCCGATTGGTTACCATCATATGTTT 1001 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 CTTGTTTGCCAAAGGAAGTGCTTGATGATTTCTCAGCTCGTGATTAGCTAATACTAAATC 1061 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 CTATTGTTTTGTTTATTATTATTGACTTTGTTCAATATTAGATGTATAGTACAACATAGA 1121 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 AGTGCTTATCATTCCATACATCTCCCGTGCGTTTATGTGAACATGCTTTTCTCTTCGCTG 1181 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 TTCCGTATTCGTATTTCATTTACTTGATACAGTGATTATATTATATTCTATATCATCCAT 1241 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 AGATTGATTTGTATGTACTAAATGTGNNGATATTTTTTTCCTTTTGATTATTTCTGGCAA 1301 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 TGTTATAGATGTTTTAANAATANTGATTATTTGAACGAGTATTCATGTATCCAGTGGCCA 1361 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 CTTTTCGGGTGAATAATTGTTTTTGTTGGCTGAAAATCATTTATTATTGTAATCCAACTA 1421 consensus_10828#6 ------------------------------------------------------------ consensus_10828#2 ------------------------------------------------------------ consensus_10828#1 ------------------------------------------------------------ consensus_10828#3 ------------------------------------------------------------ consensus_10828#5 ------------------------------------------------------------ consensus_10828#4 ------------------------------------------------------------ consensus_10828#0 ATTGGGTTCTTTGAAGTCCAAATAGTTCCGATTGAATG 1459 consensus_10828#6 -------------------------------------- consensus_10828#2 -------------------------------------- consensus_10828#1 -------------------------------------- consensus_10828#3 -------------------------------------- consensus_10828#5 -------------------------------------- consensus_10828#4 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||