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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10829#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 822 fasta sequence
[CTCGGAGCCAANAATTCGGCACGAGGGTTCGAATCCAAATCAGAAATACAGTTGGCCAACTATGCAGCAAGTAGAAATAAAGTGATTTGGATATACAGTGATAGTCTTGAACTGTGATTCCTGTCCAAATTGCATTACTCTCTTTCCTATTTTTTCCCATAGGAATGCTTAGAAATCCGTACTGCCATTTTGGGTCAAAAAGATCGTCGTGTAGCTGAGAGCCATTACCAACTGGGAACGACATATGCGGTTTCTGGAGATTTAGGAAACGCAAGCAGCTCTTTCAAAGCTTCAGTTGAGTGTCTCAAGTTGTTGGCTGAAGATGTCAGGTCAAAAATCGAAGCTGTTGACCAAAAAGATGGAGAAGAAAAAGAGCTTTTACAAGTTACACTTAAAGAGATAGAGCTTTTAATACCAGACGTTCAGAGTCGGTGTGCAGATATTGAGGAAGATCGATTAGCTGAAAGCATTAAACAAACGGAGTCTTCAATGGAACCGTGCTCTAATGGTACTAGTGTTCCAACTGATGACATATCACACTTGGTAAGGAAAAAGCGCCCTGTTTCTGGAACGACACCTGTGGAATCTGTAG-AAATATAAGTCTTGAATTAAATGGTCATGGAAACTCAACTTNCAAGAAAGTGAAGCTTATAGATTCTAATGGCGAATCCTTGCCG-ATGANAACGGTNGTTAGNTAGTTGATGTATGCTTCTAGATATNNAACCGGTTCCCAATANNTGCATTCATTTTACAGATTTTGTCAGAAATTTTGGCTATCGNTTTTGAATAATTATCTGCAGATACTTATTCAAATAAAGTTAT]
[+] EMBL CD081968 [CTCGGAGCCAANAATTCGGCACGAGGGTTCGAATCCAAATCAGAAATACAGTTGGCCAACTATGCAGCAAGTAGAAATAAAGTGATTTGGATATACAGTGATAGTCTTGAACTGTGATTCCTGTCCAAATTGCATTACTCTCTTTCCTATTTTTTCCCATAGGAATGCTTAGAAATCCGTACTGCCATTTTGGGTCAAAAAGATCGTCGTGTAGCTGAGAGCCATTACCAACTGGGAACGACATATGCGGTTTCTGGAGATTTAGGAAACGCAAGCAGCTCTTTCAAAGCTTCAGTTGAGTGTCTCAAGTTGTTGGCTGAAGATGTCAGGTCAAAAATCGAAGCTGTTGACCAAAAAGATGGAGAAGAAAAAGAGCTTTTACAAGTTACACTTAAAGAGATAGAGCTTTTAATACCAGACGTTCAGAGTCGGTGTGCAGATATTGAGGAAGATCGATTAGCTGAAAGCATTAAACAAACGGAGTCTTCAATGGAACCGTGCTCTAATGGTACTAGTGTTCCAACTGATGACATATCACACTTGGTAAGGAAAAAGCGCCCTGTTTCTGGAACGACACCTGTGGAATCTGTAG AAATATAAGTCTTGAATTAAATGGTCATGGAAACTCAACTTNCAAGAAAGTGAAGCTTATAGATTCTAATGGCGAATCCTTGCCG ATGANAACGGTNGTTAGNTAGTTGATGTATGCTTCTAGATATNNAACCGGTTCCCAATANNTGCATTCATTTTACAGATTTTGTCAGAAATTTTGGCTATCGNTTTTGAATAATTATCTGCAGATACTTATTCAAATAAAGTTAT]
[+] EMBL AW017202 [ GTAGCTGAGAGCCATTACCAACTGGGAACGACATATGCGGTTTCTGGAGATTTAGGAAACGCAAGCAGCTCTTTCAAAGCTTCAGTTGAGTGTCTCAAGTTGTTGGCTGAAGATGTCAGGTCAAAAATCGAAGCTGTTGACCAAAAAGATGGAGAAGAAAAAGAGCTTTTACAAGTTACACTTAAAGAGATAGAGCTTTTAATACCAGACGTTCAGAGTCGGTGTGCAGATATTGAGGAAGATCGATTAGCTGAAAGCATTAAACAAACGGAGTCTTCAATGGAACCGTGCTCTAATGGTACTAGTGTTCCAACTGATGACATATCACA ]
[+] EMBL CD145601 [ ATGGAGAAGAAAAAGAGCTTTTACAAGTTACACTTAAAGAGATAGAGCTTTTAATACCAGACGTTCAGAGTCGGTGTGCAGATATTGAGGAAGATCGATTAGCTGAAAGCATTAAACAAACGGAGTCTTCAATGGAACCGTGCTCTAATGGTACTAGTGTTCCAACTGATGACATATCACACTTGGTAAGGAAAAAGCGCCCTGTTTCTGGAACGACACCTGTGGAATCTGTAGAAAATATAAGTCTTGAATTAAATGGTCATGGAAACTCAACTTCCAAGAAGGTGAAGCTTATAGATTCTAATGGCGAATCCTTGCCGAATGAAAA ]
consensusID : consensus_10829#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 788 fasta sequence
[AGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGATCCGGTATCCCATCCAATCAAGTCATAGATGCTATGTGTGAAGAAAACAATCAGGAAAACAGTGAAACCAAAGAGGATGATGCTCCTAGTGAAGACATTGAAGGTGTAGGCGGAAATGATGCTCCCAGTAAAGACATTGAAGCTGTAAGCAGAAATGATGCTGCTGGTGATAATCCGACGGATGACGCTGTCGAGGAAGCTGAGGGTGGCGAATCAAATGAATGTGAGGGGGACGAGCCTGAGGACCAAGATGAGCTCCATAATAATCCCACAGACTCGGAAGCTGCTAAATCTGATGATGAAGATGATGTGTCGAATCTGCAAATCGCTTGGGAGGTTATTGAAGTAGCCAAAAAGCTGTTCTCACAAAAAGATGACGAGGAAAGCAAGCTGAATGTTGCTGAGTGCCTAGAAAAGCTTGGTGAGATTA-GTCGCGAGAAAGAAGATTATGACCAAGCAGTAATGGACCTAAAGGAATGCTTAGAAATCCGTACTGCCATTTTGGGTCAAAAAGATCGTCGTGTAGCTGAGAGCCATTACCAACTGGGAACGACATATGCGGTTTCTGGAGATTTAGGAAACGCAAGCAGCTCTTTCAAAGCTTCAGTTGAGTGTCTCAAGTTGTTGGCTGAAGATGTCAGGTCAAAAATCGAAGCTGTTGACCAAAAAGATGGAGAAGAAAAAGAGCTTTTACAAGTTACACTTAAAGAGATAGAGCTTTTAATACCAGACGTTC]
[-] EMBL CD171125 [AGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGATCCGGTATCCCATCCAATCAAGTCATAGATGCTATGTGTGAAGAAAACAATCAGGAAAACAGTGAGACCAAAGAGGATGATGCTCCTAGTGAAGACATTGAAGGTGTAGGCGGAAATGATGCTCCCAGTAAAGACATTGAAGCTGTAAGCAGAAATGATGCTGCTGGTGATAATCCGACGGATGACGCTGTCGAGGAAGCTGAGGGTGGCGAATCAAATGAATGTGAGGGGGACGAGCCTGAGGACCAAGATGAGCTCCATAATAATCCCACAGACTCGGAAG ]
[-] EMBL CD157164 [ TGTGTGAAGAAAACAATCAGGAAAACAGTGAAACCAAAGAGGATGATGCTCCTAGTGAAGACATTGAAGGTGTAGGCGGAAATGATGCTCCCAGTAAAGACATTGAAGCTGTAAGCAGAAATGATGCTGCTGGTGATAATCCGACGGATGACGCTGTCGAGGAAGCTGAGGGTGGCGAATCAAATGAATGTGAGGGGGACGAGCCTGAGGACCAAGATGAGCTCCATAATAATCCCACAGACTCGGAAGCTGCTAAATCTGATGATGAAGATGATGTGTCGAATCTGCAAATCGCTTGGGAGGTTATTGAAGTAGCCAAAAAGCTGCTCTCACAAAAAGATGACGAGGAAAGCAAGCTGAATGTTGCTGAGTGCCTAGAAAA ]
[-] EMBL CD157207 [ AGAAACCAATCAGGAAAACAGTGAAACCAAAGAGGATGATGCTCCTAGTGAAGACATTGAAGGTGTAGGCGGAAATGATGCTCCCAGTAAAGACATTGAAGCTGTAAGCAGAAATGATGCTGCTGGTGATAATCCGACGGATGACGCTGTCGAGGAAGCTGAGGGTGGCGAATCAAATGAATGTGAGGGGGACGAGCCTGAGGACCAAGATGAGCTCCATAATAATCCCACAGACTCGGAAGCTGCTAAATCTGATGATGAAGATGATGTGTCGAATCTGCAAATCGCTTGGGAGGTTATTGAAGTAGCCAAAAAGCTGTTCCCACAAAAAGATGACGAGGAAAGCAAGCTGAATGTTGCTGAGTGCCTAGAAAA ]
[+] EMBL CD083580 [ gGAAACCAAAGAGGATGATGCTCCTAGTGAAGACATTGAAGGTGTAGGCGGAAATGATGCTCCCAGTAAAGACATTGAAGCTGTAAGCAGAAATGATGCTGCTGGTGATAATCCGACGGATGACGCTGTCGAGGAAGCTGAGGGTGGCGAATCAAATGAATGTGAGGGGGACGAGCCTGAGGACCAAGATGAGCTCCATAATAATCCCACAGACTCGGAAGCTGCTAAATCTGATGATGAAGATGATGTGTCGAATCTGCAAATCGCTTGGGAGGTTATTGAAGTAGCCAAAAAGCTGTTCTCACAAAAAGATGACGAGGAAAGCAAGCTGAATGTTGCTGAGTGCCTAGAAAAGCTTGGTGAGATTA GTCGCGAGAAAGAAGATTATGACCAAGCAGTAATGGACCTAAAGGAATGCTTAGAAATCCGTACTGCCATTTTGGGTCAAAAAGATCGTCGTGTAGCTGAGAGCCATTACCAACTGGGAACGACATATGCGGTTTCTGGAGATTTAGGAAACGCCAGCAGCTCTT ]
[-] EMBL CD119246 [ ATCCGACGGATGACGCTGTCGAGGAAGCTGAGGGTGNCGAATCAAATGAATGTGAGGGGGACGAGCCTGAGGACCAAGATGAGCTCCATAATAATCCCACAGACTCGGAAGCTGCTAAATCTGATGATGAAGATGATGTGTCGAATCTGCAAATCGCTTGGGAGGTTATTGAAGTAGCCAAAAAGCTGTTCTCACAAAAAGATGACGAGGAAAGCAAGCTGAATGTTGCTGAGTGCCTAGAAAAGCTTGGTGAGATTA GTCGCGAGAAAGAAGATTATGACCAAGCAGTAATGGACCTAAAGGAATGCTTAGAAATCCGTACTGCCATTTTGGGTCAAAAAGATCGTCGTGTAGCTGAGAGCCATTACCAACTGGGAACGACATATGCGGTTTCTGGAGATTTAGGAAACGCAAGCAGCTCTTTCAAAGCTTCAGTTGAGTGTCTCAAGTTG ]
[+] EMBL CD118723 [ GAAGCTGAGGGTGGCGAATCAAATGAATGTGAGGGGGACGAGCCTGAGGACCAAGATGAGCTCCATAATAATCCCACAGACTCGGAAGCTGCTAAATCTGATGATGAAGATGATGTGTCGAATCTGCAAATCGCTTGGGAGGTTATTGAAGTAGCCAAAAAGCTGTTCTCACAAAAAGATGACGAGGAAAGCAAGCTGAATGTTGCTGAGTGCCTAGAAAAGCTTGGTGAGATTA GTCGCGAGAAAGAAGATTATGACCAAGCAGTAATGGACCTAAAGGAATGCTTAGAAATCCGTACTGCCATTTTGGGTCAAAAAGATCGTCGTGTAGCTGAGAGCCATTACCAACTGGGAACGACATATGCGGTTTCTGGAGATTTAGGAAACGCAAGCAGCTCTTTCAAAGCTTCAGTTGAGTGTCTCAAGTTGTTGGCTGAAGATGTCAGGTCAAAAATCGAAGCTGTTGACCAAAAAGATGGAGAAGAAAAAGAGCTTTTACAGGTTACACTTAAAGAGATAGAGCTTTTAATACCA ]
[+] EMBL CD146479 [ ATCGCTTGGGAGGTTATTGAAGTAGCCAAAAAGCTGTTCTCACAAAAAGATGACGAGGAAAGCAAGCTGAATGTTGCTGAGTGCCTAGAAAAGCTTGGTGAGATTA GTCGCGAGAAAGAAGATTATGACCAAGCAGTAATGGACCTAAAGGAATGCTTAGAAATCCGTACTGCCATTTTGGGTCAAAAAGATCGTCGTGTAGCTGAGAGCCATTACCAACTGGGAACGACATATGCGGTTTCTGGAGATTTAGGAAACGCAAGCAGCTCTTTCAAAGCTTCAGTTGAGTGTCTCAAGTTGTTGGCTGAAGATGTCAGGTCAAAAATCGAAGCTGTTG ]
[+] EMBL CD169226 [ GGAGGTTATTGAAGTAGCCAAAAAGCTGTTCTCACAAAAAGATGACGAGGAAAGCAAGCTGAATGTTGCTGAGTGCCTAGAAAAGCTTGGTGAGATTA GTCGCGAGAAAGAAGATTATGACCAAGCAGTAATGGACCTAAAGGAATGCTTAGAAATCCGTACTGCCATTTTGGGTCAAAAAGATCGTCGTGTAGCTGAGAGCCATTACCAACTGGGAACGACATATGCGGTTTCTGGAGATTTAGGAAACGCAAGCAGCTCTTTCAAAGCTTCAGTTGAGTGTCTCAAGTTGTTGGCTGAAGATGTCAGGTCAAAAATCGAAGCTGTTGACCAAAAAGATGGAGAAGAAAAAGAGCTTTTACAAGTTACACTTAAAGAGATAGAGCTCTTAATACCAGACGTTC]
[+] EMBL CD188923 [ GCTGTTCTCACAAAAAGATGACGAGGAAAGCAAGCTGAATGTTGCTGAGTGCCTAGAAAAGCTTGGTGAGATTA GTCGCGAGAAAGAAGATTATGACCAAGCAGTAATGGACCTAAAGGAATGCTTAGAAATCCGTACTGCCATTTTGGGTCGAAAAGATCGTCGTGTAGCTGAGAGCCATTACCAACTGGGAACGACATATGCGGTTTCTGGAGATTTAGGAAACGCAAGCAGCTCTTTCAAAGCTTCAGTTGAGTGTCTCAAGTTGTTGGCTGAAGATGTCAGGTCAAAAACCGAAGCTGTTGACCAAAAAGATGGAGAAGAAAAAGAGCTTTTACAAGTTACACTTAAAGAGATAGA ]
[-] EMBL CD068232 [ tCTTGGTAAGATTATGTCGCGAGAAAGAAGATTATGACCAAGCAGTAGTGGACCTAAAGGAATGCTTAGAAATCCGTACTGCCATTTTGGGTC AAAAGATCGTCGTG ]
consensusID : consensus_10829#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 572 fasta sequence
[GTCATCTTGGTCCTCAGGCTCGTCCCCCTCACATTCATTTGATTCGCCACCCTCAGCTTCCTCGACAGCGTCATCCGTCGGATTATCACCAGCAGCTTCCGAGTCTGTGGGATTATTATGGAGCTCATCTTGGTCCTCAGGCTCGTCCCCCTCACATTCATTTGATTCGCCACCCTCAGCTTCCTCGACAGCGTCATCCGTCGGATTATCACCAGCAGCATCATTTCTGCTTACAGCTTCAATGTCTTTACTGGGAGCATCATTTCCGCCTACACCTTCAATGTCTTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCACACATAGCATCTATGACTTGATTGGAAATATCTTCCTTTTCTTCAGTTGTCAACTCAGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGACCCGGTACTAATCACGTTGAGACAAATCATTCATACTTACTCCCATCCAATGCGTTCCCGATAACTGAACTTTCTATTCGTGATAGTTCGAGAAGTGCAGTACCATACAGTAAAGTAGGAACAG]
[+] EMBL BG930643 [GTCATCTTGGTCCTCAGGCTCGTCCCCCTCACATTCATTTGATTCGCCACCCTCAGCTTCCTCGACAGCGTCATCCGTCGGATTATCACCAGCAGCTTCCGAGTCTGTGGGATTATTATGGAGCTCATCTTGGTCCTCAGGCTCGTCCCCCTCACATTCATTTGATTCGCCACCCTCAGCTTCCTCGACAGCGTCATCCGTCGGATTATCACCAGCAGCATCATTTCTGCTTACAGCTTCAATGTCTTTACTGGGAGCATCATTTCCGCCTACACCTTCAATGTCTTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCACACATAGCATCTATGACTTGATTGGAAATATCTTCCTTTTCTTCAGTTGTCAACTCAGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGAC ]
[+] EMBL BG931050 [ gTCGTCCCCCTCACATTCATTTGATTCGCCAGCCTCAGCTTCCTCGACAGCGTCATCCGTCGGATTATCACCAGCAGCATCATTTCTGCTTACAGCTTCAATGTCTTTACTGGGAGCATCATTTCCGCCTACACCTTCAATGTCTTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCACACATAGCATCTATGACTTGATTGGAAATATCTTCCTTTTCTTCAGTTGTCAACTCAGGCCCAGGTTCAATGATCTCATTAT ]
[+] EMBL CD142818 [ CTTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCACACATAGCATCTATGACTTGATTGGAAATATCTTCCTTTTCTTCAGTTGTCAACTCAGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGATCCGGTACTAATCACGTTGAGACAAATCATTCATACTTACTCCCATCCAATGCGTTCCCGATAACTGAACTTTCTATTCGTGATAGTTCGAGAAGTGCAGTACCATACAGTAAAGTAGGAACAG]
consensusID : consensus_10829#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 410 fasta sequence
[ACATTCATTTGATTCGCCACCCTCAGCTTCCTCG-ACAGCGTCATCCGTCGGATTATCACCAGCAGCATCATTTCTGCTTACAGC-TTCAATGTCTTTACTGGGAGCATCATTTCCGCCTACACCTTCAATGTCTTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCACACATAGCATCTATGACTTGATTGGAAATATCTTCCTTTTCTTCAGTTGTCAACTCAGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGATCCGGTATCCCATCCAATGCGTTCCCGATAACTGAACTTTCTATTCGTGATAGTTCGAGAAGTGCAGTACCATACAGTAAGTTAGGAACAGCAAGAGCTTCATGAAAGTCANCAT]
[+] EMBL CD163472 [ACATTCATTTGATTCGCCACCCTCAGCTTCCTCG ACAGCGTCATCCGTCGGATTATCACCAGCAGCATCATTTCTGCTTACAGC TTCAATGTCTTTACTGGGAGCATCATTTCCGCCTACACCTTCAATGTCTTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCACACATAGCATCTATAACTTGATTGGAAATATCTTCCTTTTCTTCAGTTGTCAACTCAGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGATCCGGTATCCCATCCAATGCGTTCCCGATAACTGAACTTTCTATTCGTGATAGTTCGAGAAGTGCAGTACCATACAGTAAGTTAGGAACAGCAAGAGCTTCATGAAAGTCANCAT]
[+] EMBL CD123323 [ GATTCGCCACCCTCAGCTTCCTCG ACAGCGTCATCCGTCGGATTATCACCAGCAGCATCATTTCTGCTTACAGC TTCAATGTCTTTATTGGGAGCATCATTTCCGCCTACACCTTCAATGTCTTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCACACATAGCATCTATGGCTTGATTGGAAATATCTTCCTTTTCTTCAGTTGTCAACTCAGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGATCCGGTATCCCATCCAATGCGCTCCCGATAACTGAACTTTCTATTCGTGATAGTTCGAGAAGTGCAGTACCATACAGTAAGTTAGGAACAGCAAGAGCTTCATG ]
[-] EMBL CD146467 [ ATTCGCCACCCTCAGCTTCCTCG ACAGCGTCATCCGTCGGATTATCACCAGCAGCATCATTTCTGCTTACAGC TTCAATGTTTTTACTGGGAGCATCATTTCCGCCTACACCTTCAATGTCTTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCACACATAGCATCTATGACTTGATTGGAAATATCTTCCTTTTCTTCAGTTGTCAACTCAGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGATCCGGTATCCCATCCAATGCGTTCCCGATAACTGAACTTTCTATTCGTGATAGTTCGAGAAGTGCAGTACCATACAGTAAGTTAGGAACAGCAAGAGCTTCATGA ]
[+] EMBL CD161506 [ TTCGCCACCCTCAGCTTCCTCG ACAGCGTCATCCGTCGGATTATCACCAGCAGCATCATTTCTGCTTACAGC TTCAATGTCTTTACTGGGAGCATCATTTCCGCCTACACCTTCAATGTCTTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCACACATAGCATCTATGACTTGATTGGAAATATCTTCCTTTTCTTCAGTTGTCAACTCAGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGATCCGGTATCCCATCCAATGCGTTCCCGATAACTGAACTTTCTATTCGTGATAGTTCGAGAAGTGCAGTACCATACAGTAAGTTAGGAACAGCAAGAGCTTCATG ]
[+] EMBL CD064158 [ CAGC TCCTCGNACAGCGTCATCCGTCGGATTATCACCAGCAGCATCATTTCTGCTTACAGCGTTCAATGTCTTTACTGGGAGCATCATTTCCGCCTACACCTTCAATGTCTTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCACACATAGCATCTATGACTTGATTGGAAATATCTTCCTTTTCTTCAGTTGTCAACTCAGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGATCCGGTATCCCATCCAATGCGTTCCCGATAACTGAACTTTCTATT ]
[+] EMBL CD123294 [ TCTATGACTTGATTGGAAATATCTTCCTTTTCTTCAGTTGTCAACTCAGGCCCAGGTTCAATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGATCCGGTATCCCATCCAATGCGTTCCCGATAACTGAACTTTCTATTCGTGATAGTTCGAGAAGTGCAGTACCATACAGTAAGTTAGGAACAGCAAGAGCTTCGTG ]
consensusID : consensus_10829#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence
[CTGTGGAATCTGTAGAANATATAAGTCTTGAATTAAATGGTCATGGAAACTCAACTTCCAAGAAGGTGAAGCTTATAGATTCTAATGGCGAATCCTTGCCGAATGAAAACGGTGTTTAGTTAGTTGATGTATGCTTCTAGATTATAAACCGGTTCCAAATAATTGCATTTCATTTTTACAGATTTTGTCAGAAATTTTTGTCTATCGTTTTTGAACAATTTATCTGCAGATACTNTATTCCAAAAATAAAGTTTATGTA]
[-] EMBL CD134527 [CTGTGGAATCTGTAGAANATATAAGTCTTGAATTAAATGGTCATGGAAACTCAACTTCCAAGAAGGTGAAGCTTATAGATTCTAATGGCGAATCCTTGCCGAATGAAAACGGTGTTTAGTTAGTTGATGTATGCTTCTAGATTATAAACCGGTTCCAAATAATTGCATTTCATTTTTACAGATTTTGTCAGAAATTTTTGTCTATCGTTTTTGAACAATTTATCTGCAGATACTNTATTCCAAAAATAAAGTTTATGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10829#0 CTCGGAGCCAANAATTCGGCACGAGGGTTCGAATCCAAATCAGAAATACAGTTGGCCAAC 60
consensus_10829#4 ------------------------------------------------------------
consensus_10829#2 ------------------------------------------------------------
consensus_10829#3 ------------------------------------------------------------
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 TATGCAGCAAGTAGAAATAAAGTGATTTGGATATACAGTGATAGTCTTGAACTGTGATTC 120
consensus_10829#4 ------------------------------------------------------------
consensus_10829#2 ------------------------------------------------------------
consensus_10829#3 ------------------------------------------------------------
consensus_10829#1 -----------------------------------------------AGGCCCAGGTTCA 13
consensus_10829#0 CTGTCCAAATTGCATTACTCTCTTTCCTATTTTTTCCCATAGGAATGCTTAGAAATCCGT 180
consensus_10829#4 ------------------------------------------------------------
consensus_10829#2 ------------------------------------------------------------
consensus_10829#3 ------------------------------------------------------------
consensus_10829#1 ATGATCTCATTATCCGATTCTGAATCATCTTTATCTGGATCCGGTATCCCATCCAATCAA 73
consensus_10829#0 ACTGCCATTTTGGGTCAAAAAGATCGTCGTGTAGCTGAGAGCCATTACCAACTGGGAACG 240
consensus_10829#4 ------------------------------------------------------------
consensus_10829#2 ------------------------------------------------------------
consensus_10829#3 ------------------------------------------------------------
consensus_10829#1 GTCATAGATGCTATGTGTGAAGAAAACAATCAGGAAAACAGTGAAACCAAAGAGGATGAT 133
consensus_10829#0 ACATATGCGGTTTCTGGAGATTTAGGAAACGCAAGCAGCTCTTTCAAAGCTTCAGTTGAG 300
consensus_10829#4 ------------------------------------------------------------
consensus_10829#2 ------------GTCATCTTGGTCCTCAGGCTCGTCCCCCTCACATTCATTTGATTCGCC 48
consensus_10829#3 ------------------------------------------------------------
consensus_10829#1 GCTCCTAGTGAAGACATTGAAGGTGTAGGCGGAAATGATGCTCCCAGTAAAGACATTGAA 193
consensus_10829#0 TGTCTCAAGTTGTTGGCTGAAGATGTCAGGTCAAAAATCGAAGCTGTTGACCAAAAAGAT 360
consensus_10829#4 ------------------------------------------------------------
consensus_10829#2 ACCCTCAGCTTCCTCGACAGCGTCATCCGTCGGATTATCACCAGCAGCTTCCGAGTCTGT 108
consensus_10829#3 ------------------------------------------------------------
consensus_10829#1 GCTGTAAGCAGAAATGATGCTGCTGGTGATAATCCGACGGATGACGCTGTCGAGGAAGCT 253
consensus_10829#0 GGAGAAGAAAAAGAGCTTTTACAAGTTACACTTAAAGAGATAGAGCTTTTAATACCAGAC 420
consensus_10829#4 ------------------------------------------------------------
consensus_10829#2 GGGATTATTATGGAGCTCATCTTGGTCCTCAGGCTCGTCCCCCTCACATTCATTTGATTC 168
consensus_10829#3 ---------------------------------------------ACATTCATTTGATTC 15
consensus_10829#1 GAGG--GTGGCGAATCAAATGAATGTGAGGGGGACGAGCCTGAGGACCAAGATGAGCTCC 311
consensus_10829#0 GTTCAGAGTCGGTGTGCAGATATTGAGGAAGATCGATTAGCTGAAAGCA-TTAAACAAAC 479
consensus_10829#4 ------------------------------------------------------------
consensus_10829#2 GCCACCCTCAGCTTCCTCGACAGCGTCATCCGTCGGATTATCACCAGCA-GCATCATTTC 227
consensus_10829#3 GCCACCCTCAGCTTCCTCGACAGCGTCATCCGTCGGATTATCACCAGCA-GCATCATTTC 74
consensus_10829#1 ATAATAATCCCACAGACTCGGAAGCTGCTAAATCTGATGATGAAGATGATGTGTCGAATC 371
consensus_10829#0 GGAGTCTTCAATGGAACCGTGCTCTAATGGT--ACTAGTGTTCCAACTGATGACATATCA 537
consensus_10829#4 ------------------------------------------------------------
consensus_10829#2 TGCTTACAGCTTCAATGTCTTTACTGGGAGC--ATCATTTCCGCCTACACCTTCAATGTC 285
consensus_10829#3 TGCTTACAGCTTCAATGTCTTTACTGGGAGC--ATCATTTCCGCCTACACCTTCAATGTC 132
consensus_10829#1 TGCAAATCGCTTGGGAGGTTATTGAAGTAGCCAAAAAGCTGTTCTCACAAAAAGATGACG 431
consensus_10829#0 CACTTGGTAAGGAAAAAGCGCCCTGTTTCTGGAACGACACCTGTGGAATCTGTAGA-AA- 595
consensus_10829#4 ----------------------------------------CTGTGGAATCTGTAGA-ANA 19
consensus_10829#2 TTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCAC-ACA 344
consensus_10829#3 TTCACTAGGAGCATCATCCTCTTTGGTTTCACTGTTTTCCTGATTGTTTTCTTCAC-ACA 191
consensus_10829#1 AGGAAAGCAAGCTGAATGTTGCTGAGTGCCTAGAAAAGCTTGGTGAGATTAGTCGCGAGA 491
* * * *
consensus_10829#0 TATAAGTCTTGAATTAAATGGTCATGGA---AACTCAACTTNCAAGA---AAGTGAAGCT 649
consensus_10829#4 TATAAGTCTTGAATTAAATGGTCATGGA---AACTCAACTTCCAAGA---AGGTGAAGCT 73
consensus_10829#2 TAGCATCTATGACTTGATTGGAAATATC---TTCCTTTTCTTCAGTTGTCAACTCAGGCC 401
consensus_10829#3 TAGCATCTATGACTTGATTGGAAATATC---TTCCTTTTCTTCAGTTGTCAACTCAGGCC 248
consensus_10829#1 AAGAAGATTATGACCAAGCAGTAATGGACCTAAAGGAATGCTTAGAAATCCGTACTGCCA 551
* * * * ** * *
consensus_10829#0 TATAGATTCTAATGGCGAATCCTTGCCGA-TGANAACGGTNGTTAGNTAG--TTGATGTA 706
consensus_10829#4 TATAGATTCTAATGGCGAATCCTTGCCGAATGAAAACGGTGTTTAGTTAG--TTGATGTA 131
consensus_10829#2 C--AGGTTCAATGATCTCATTAT--CCGATTCTGAATCATCTTTATCTGG--ACCCGGTA 455
consensus_10829#3 C--AGGTTCAATGATCTCATTAT--CCGATTCTGAATCATCTTTATCTGG--ATCCGGTA 302
consensus_10829#1 TTTTGGGTCAAAAAGATCGTCGT--GTAGCTGAGAGCCATTACCAACTGGGAACGACATA 609
* ** * * * * * * * * * **
consensus_10829#0 TGCTTCTAGATAT--NNAACCGGTTCCCAATANNTGCATTCA---TTTTACAGATTTTGT 761
consensus_10829#4 TGCTTCTAGATTA--TAAACCGGTTCCAAATAATTGCATTTCAT-TTTTACAGATTTTGT 188
consensus_10829#2 CTAATCACGTTGAGACAAATCATTCATACTTACTCCCATCCAATGCGTTCCCGAT---AA 512
consensus_10829#3 ---------------------------------TCCCATCCAATGCGTTCCCGAT---AA 326
consensus_10829#1 TGCGGTTTCTGGAGATTTAGGAAACGCAAGCAGCTCTTTCAAAGCTTCAGTTGAGT--GT 667
* **
consensus_10829#0 CAGAAATTTTGG-CTATCGNT-T----TTGAATAATT-ATCTGCAGAT--ACTT-ATTC- 810
consensus_10829#4 CAGAAATTTTTGTCTATCGTT-T----TTGAACAATTTATCTGCAGAT--ACTNTATTCC 241
consensus_10829#2 CTGAACTTTCTATTCGTGATAGT----TCGAGAAGTGCAGTACCATAC--AGTAAAGTAG 566
consensus_10829#3 CTGAACTTTCTATTCGTGATAGT----TCGAGAAGTGCAGTACCATAC--AGTAAGTTAG 380
consensus_10829#1 CTCAAGTTGTTGGCTGAAGATGTCAGGTCAAAAATCGAAGCTGTTGACCAAAAAGATGGA 727
* ** ** * * * * * * *
consensus_10829#0 --AAATAAAGTT-AT--------------------------------------------- 822
consensus_10829#4 AAAAATAAAGTTTATGTA------------------------------------------ 259
consensus_10829#2 GAACAG------------------------------------------------------ 572
consensus_10829#3 GAACAGCAAGAGCTTCATGAAAGTCANCAT------------------------------ 410
consensus_10829#1 GAAGAAAAAGAGCTTTTACAAGTTACACTTAAAGAGATAGAGCTTTTAATACCAGACGTT 787
* *
consensus_10829#0 -
consensus_10829#4 -
consensus_10829#2 -
consensus_10829#3 -
consensus_10829#1 C 788
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||