These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1253 fasta sequence [CGTTTCACTATAGGCGTAATTACTAACCAATCCAGTCAGGATTTCTGTGGATTTTCATCCGTATTCAATTATTTCGACACAAACGTGGTGTTTCTGTATTCGCTTAACGGCTATTAGAGAAACTATAGTAGTCCGGATATAACACTCGATAGTTTAGCGTACTCAACTATCCTTCATTTATCTCATATTCATGCAAGGTTTGTGTATTCGTGTTTATTTCCTTAGGTCATTGCTAGAAGAGTGCTCCACACTTCTCAGTCCCCATCCTTCCCGCTCACCTTATTCCTGTTATACATTAGCAACAATCCCACGGCTGTGCCATACAAAGCATCTTACCTACACCGGCTACATAAGGCGTCGTCTCGGTCGCGGCGGTCGAATAGTATGTGATCGTGCCGCAGCCCCCACACCACTTTCTGCTTATCTCCAGTCCTATGATGCGAATTTGAAATCTAGCGGTTCAGCTAGTCCAAGTCTTATACCCTCGAACTTTTGCTGGCGACAGTCACAAACAAAAGATGTTGCTTTGCTCAACAGACTAAAGACTTCTATTTTCAGTTCGCACCGTGGGCGTCCTTCATTCTCCTGGCCTGTTTCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTGAATCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTTCTACTCGAAGACGGATTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG-AATGACGGTTTGT-TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC-ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC-GGTGTTACACTTCAGCCTTCTGAGTTTCCCAGGTCCCCTAGTGTTGATGTTTCTTTCAGTAATTCTAATGGTAACGGCCTGTCTTCGACGGACAATAGAATGTTGCTGGCGGATCCTTCAGTCTTGCCACCACACTAAAGTACGCTGTTTAACTCGTGACTGTGGGTCTAGGGATTCGAAAGTTCCTGGTCCTCAGCTACATGTTACGAATGGAGTAAGCCCAACACAAATCTTTCAGCTTCCAACTTAATCTTTCGAA] [-] EMBL CD178473 [CGTTTCACTATAGGCGTAATTACTAACCAATCCAGTCAGGATTTCTGTGGATTTTCATCCGTATTCAATTATTTCGACACAAACGTGGTGTTTCTGTATTCGCTTAACGGCTATTAGAGAAACTATAGTAGTCCGGATATAACACTCGATAGTTTAGCGTACTCAACTATCCTTCATTTATCTCATATTCATGCAAGGTTTGTGTATTCGTGTTTATTTCCTTAGGTCATTGCTAGAAGAGTGCTCCACACTTCTCAGTCCCCATCCTTCCCGCTCACCTTATTCCTGTTATACATTAGCAACAATCCCACGGCTGTGCCATACAAAGCATCTTACCTACACCGGCTACATAAGGCGTCGTCTCGGTCGCGGCGGTCGAATAGTATGTGATCGTGCCGCAGCCCCCACACCACTTTCTGCTTATCTCCAGTCCTATGATGCGAATTTGAAATCTAGCGGTTCAGCTAGTCCAAGTCTTATACCCTCGAACTTTTGCTGGCGACAGTCACAAACAAAAGATGTTGCTTTGCTCAACAGACTAAAGACTTCTATTTTCAGTTCGCAC ] [+] EMBL CD091632 [ ATGTGATCGTGCCGCAGCCCCCACACCACTTTCTGCTTATCTCCAGTCCTATGATGCGAATTTGAAATCTAGCGGTTCAGCTAGTCCAAGTCTTATACCCTCGAACTTTTGCTGGCGACAGTCACAAACAAAAGATGTTGCTTTGCTCAACAGACTAAAGACTTCTATTTTCAGTTCGCACCGTGGGCGTCCTTCATTCTCCTGGCCTGTTTCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTGAATCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTTCTACTCGAAGACGGATTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCAC ] [+] EMBL CD186171 [ CAAACAAAAGATGTTGCTTTGCTCAACGGACTAAAGACTTCTATTTTCAGTTCGCACCGTGGGCGTCCTTCATTCTCCTGGCCTGTTCCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTGAATCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTTCTACTCGAAGACGGATTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTNTCCCAGGTCCCCTAGTGTTGATGTTTCTTTCAGTAATTCTAATGGTAACGGCCTGTCTTCG ] [-] EMBL CD091243 [ ACAAAAGATGTTGCTTTGCTCAACAGACTAAAGACTTCTATTTTCAGTTCGCACCGTGGGCGTCCTTCATTCTCCTGGCCTGTTTCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTGAATCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTTCTACTCGAAGACGGATTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCGCCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAA ] [-] EMBL CD091251 [ CAGTTCGCACCGTGGGCGTCCTTCATTCTCCTGGCCTGTTTCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTGAATCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTTCTACTCGAAGACGGATTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCGCCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAA ] [-] EMBL CD184871 [ TTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGCAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTTTCCCAGGTCCCCTAGTGTTGATGTTTCTTTCAGTAATTCTAATGGTAACGGCCTGTCTTCGACGGACAATAGAATGTTGCTGGCGGATCCTTCAGTCTTGCCACCACACTAAAGTACGCTGTTTAACTCGTGACTGTGGGTCTAGGGATTCGAAAG ] [+] EMBL CD139977 [ CAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGT ] [+] EMBL CD148663 [ GATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGTGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTT ] [+] EMBL CD098389 [ GATGATGTGACCGTAGAT AAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTT ] [+] EMBL CD111090 [ GATGATGTGACCGTAGAT AAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCCATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTT ] [-] EMBL CD110903 [ ATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTT AATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAGTAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATACAGGTGTTACACTTCAGCCTTCTGAGTTT ] [-] EMBL CD195180 [ TCGAAATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAANTCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCNGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTTTCCCAGGTCCCCTAGTGTTGATGTTTCTTTCAGTAATTCTAATGGTAACGGCCTGTCTTCGACGGACAATAGAATGTTGCTGGCGGATCCTTCAGTCTTGCCACCAC CTAAAGTACGCTGTTTAACTCGTGACTGTGGGTCTAGGGATTCGAAAGTTCCTGGTCCTCAGCTACATGTTACGAATGGAGTAAGCCCAACACAAATCTTTCAGCTTCCAACTTAATCTTTCGAA] [+] EMBL CD112790 [ CG AATGACGGTTTGTCTGATTCAGGAAAAACATTCTCCCTTGCAGCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCCATCGTCCGCGGTTATGATTCCCGTCGACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCG ] consensusID : consensus_10832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1150 fasta sequence [TCCTGGCATACCACCAGCCTGGTACACCTTCGTAATTATCGGCGCACAGACCTTCCCCAACTCCACAGAGCCGCCACCAGTGCCACCTGAAGACGTGCAAATTACATCCGCTAAAGGGACAGATGAGCCAATTAGTACCTTTGTGCGTGGTCGTGGCTCAGGTAGGGGAACACCTCGAGGAATGCGTGTAGGTAGAGGGCAGGGGCCACGAATAGCTCCGACAGAAGCACCTCAAGATTCAGTGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAGCTAATGACGGCAAAGATGTGTTTGCAAACATGGTGGCTCACAGAAAAATACAAGAGGTCTCCGAAGATGTCTACGAGGTGGAGGANAAGGAAAACGAGCCTGAGGAGTATTAGNCGATCGATATTGATTTCTCTTTCGCTGACAACTTTGGAAACCGTAGAAGAGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGTGATGTTGCACGCGGTGCAGGACCAAGAAGTGAACGTGGGGGTCGAGGAAGAGGAATGTTTGGTCGAGGTCGTGGGATGCCATTCAATTCAAATCGAGACTTCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTGACTTTTACCTAAGTGCTTTTGTAATGATGAACTGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGTCTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAACGAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAG] [+] EMBL CD112933 [TCCTGGCATACCACCAGCCTGGTACACCTTCGTAATTATCGGCGCACAGACCTTCCCCAACTCCACAGAGCCGCCACCAGTGCCACCTGAAGACGTGCAAATTACATCCGCTAAAGGGACAGATGAGCCAATTAGTACCTTTGTGCGTGGTCGTGGCTCAGGTAGGGGAACACCTCGAGGAATGCGTGTAGGTAGAGGGCAGGGGCCACGAATAGCTCCGACAGAAGCACCTCAAGATTCAGTGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAGCTAATGACGGCAAAGATGTGTTTGCAAACATGGTGGCTCACAGAAAAATACAAGAGGTCTCCGAAGATGTCTACGAGGTGGAGGANAAGGAAAACGAGCCTGAGGAGTATTAGNCGATCGATATTGATTTCTCT ] [+] EMBL CD184682 [ GCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAGCTAATGACGGCAAAGATGTGTTTGCAAACATGGTGGCTCACAGAAAAATACAAGAGGTCTCCGAAGATGTCTACGAGGTGGAGGAGAAGGAAAACGAGCCTGAGGAGCATCAGTCGATCGATATTGATTTCTCTTTCGCTGACAACTTTGGAAACCGTAGAAGAGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGTGATGTTGCACGCGGTGCAGGACCAAGAAGTGAACGTGGGGGTCGAGGAAGAGGAATGTTTGGTCGAGGTCGTGGGATGCCATTCAATTCAAATCGAGACTTCGAAAATCAGGAT ] [-] EMBL CD142152 [ GAGGAATGTTTGGTCGAGGTCGTGGGATGCCATTCAATTCAAATCGAGACTTCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTGACTTTTACCTAAGTGCTTTTGTAATGATGAACTGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGTCTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAACGAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGT ] [-] EMBL CD141568 [ GAC TCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTGACTTTTACCTAAGTGCTTTTGTAATGATGAACTGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGTCTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAACGAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAA ] [+] EMBL CD148609 [ CTTTTACCTAAGTGCTTTTGTAATGATGAACAGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGTCTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAACGAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACG ] [-] EMBL CD148632 [ TTTTACCTAAGTGCTTTTGTAATGATGAACTGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGTCTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAACGAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAG] consensusID : consensus_10832#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [TCGAGGCCNAGAATCGGCACGAGGATTACAATGGCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCTTAACATTAAAATTGCTTCATATCTGTTTTTCTTCCTATACTATATCCTTATATACAACCTATCTTTTATATACTACCACCACTAAATTGACTACTTCTATGAATCCGGTGTTCATCTTGTTGTGCTAACGAGGTATGGCAACTTAGGCCGATGCATATGTGTGCCTGGTCCTACGATGTAGCTGACTGACTGACCATTCTCAGGTGCCTGGTAAATGGGTTAATTAGAAAGATTTGAAGGCGGATGATTTATAAGTAAGAGTAAAACTGTTGACACGATTTGCGAGTTATAAAAAATCATATCCAGCCTTGGTGGGGCACTAATCCTCAATCAACTCATTAACAATTATATTGAACTCTGTTGATAAATGTACACTAGCAAGTTAGGATGGTCAGTAGTAAACCAGACTCACATTTGATAACAACAACCCACGTGCCTTCACTCCTTGTTTCCGTTCAGATCTTAAGTTGTTGGATACCT] [+] EMBL CD083722 [TCGAGGCCNAGAATCGGCACGAGGATTACAATGGCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCTTAACATTAAAATTGCTTCATATCTGTTTTTCTTCCTATACTATATCCTTATATACAACCTATCTTTTATATACTACCACCACTAAATTGACTACTTCTATGAATCCGGTGTTCATCTTGTTGTGCTAACGAGGTATGGCAACTTAGGCCGATGCATATGTGTGCCTGGTCCTACGATGTAGCTGACTGACTGACCATTCTCAGGTGCCTGGTAAATGGGTTAATTAGAAAGATTTGAAGGCGGATGATTTATAAGTAAGAGTAAAACTGTTGACACGATTTGCGAGTTATAAAAAATCATATCCAGCCTTGGTGGGGCACTAATCCTCAATCAACTCATTAACAATTATATTGAACTCTGTTGATAAATGTACACTAGCAAGTTAGGATGGTCAGTAGTAAACCAGACTCACATTTGATAACAACAACCCACGTGCCTTCACTCCTTGTTTCCGTTCAGATCTTAAGTTGTTGGATACCT] consensusID : consensus_10832#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [GGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAGCTAATGACGGCAAAGATGTGTTTGCAAACATGGTGGCTCACAGAAAAATACAAGAGGTCTCCGAAGATGTCTACGAGGTGGAGGAGAAGGAAAACGAGCCTGAGGAGCATCAGTCGATGGAGATTGATTTCTCTTTCGCTGACAACTTTGGAAACCGTAGAAGAGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGTGATGTTGTACTTTAAGTGTGAACTTGTTCAGCCTCCTTATTNTATTTACATGGGAGAAAGATAACATGATAATGAT] [+] EMBL CD150386 [GGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAGCTAATGACGGCAAAGATGTGTTTGCAAACATGGTGGCTCACAGAAAAATACAAGAGGTCTCCGAAGATGTCTACGAGGTGGAGGAGAAGGAAAACGAGCCTGAGGAGCATCAGTCGATGGAGATTGATTTCTCTTTCGCTGACAACTTTGGAAACCGTAGAAGAGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGTGATGTTGTACTTTAAGTGTGAACTTGTTCAGCCTCCTTATTNTATTTACATGGGAGAAAGATAACATGATAATGAT] consensusID : consensus_10832#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [TCCTAGTGCCCCCACCCTCTACCTCGACCCCCACGTTCACTTCTTGGTCCTGCACCGCGTGCAACATCACGCCCACGATCGAACCCTCTGCTTTCGAATCCTCGTCCACCTCTTCTACGGTTTCCAAAGTTGTCAGCGAAAGAGAAATCAATATCGATCGACTGATGCTCCTCAGGCTCGTTCATTCTACGTGGTGACCGCCTGTCACGACCAGACGAGAAAGAACGAGAACGCCGTCCATTACGTCGCGGAGTAACCGATCGTCTTCGGCGGTTTGGAGTTGGTCGGCCATATTTTGCTCTTTGTACCCTGACCTCTCGTCCATCTACCTTATGGCCATCCATGCC] [+] EMBL CD192908 [TCCTAGTGCCCCCACCCTCTACCTCGACCCCCACGTTCACTTCTTGGTCCTGCACCGCGTGCAACATCACGCCCACGATCGAACCCTCTGCTTTCGAATCCTCGTCCACCTCTTCTACGGTTTCCAAAGTTGTCAGCGAAAGAGAAATCAATATCGATCGACTGATGCTCCTCAGGCTCGTTCATTCTACGTGGTGACCGCCTGTCACGACCAGACGAGAAAGAACGAGAACGCCGTCCATTACGTCGCGGAGTAACCGATCGTCTTCGGCGGTTTGGAGTTGGTCGGCCATATTTTGCTCTTTGTACCCTGACCTCTCGTCCATCTACCTTATGGCCATCCATGCC] consensusID : consensus_10832#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [TTTTTTTTTTTTTTTCCCGGATATATTTTAATTAGACATTTTCGTTAGCTAAATTACTATGACGGAACACTCACCCAAGGTTTTTAAGTTAAAGTCTATTCCCCCTATTTCGATTCAGTTAACGCCATTTTGGTCCGACAATATCGAGTCCTGGTTCTGCTATGCANAAGCCGATTTTTGCATGCACGGAATCACGGACTCGCGCACACGTTTCCTCGCGGTAGTTAAGGCGTTACCGCGCGAGTTTAACAGGTACGTAACACCTAGTATGTTTACTAGTGATGTTTC] [+] EMBL AI395459 [TTTTTTTTTTTTTTTCCCGGATATATTTTAATTAGACATTTTCGTTAGCTAAATTACTATGACGGAACACTCACCCAAGGTTTTTAAGTTAAAGTCTATTCCCCCTATTTCGATTCAGTTAACGCCATTTTGGTCCGACAATATCGAGTCCTGGTTCTGCTATGCANAAGCCGATTTTTGCATGCACGGAATCACGGACTCGCGCACACGTTTCCTCGCGGTAGTTAAGGCGTTACCGCGCGAGTTTAACAGGTACGTAACACCTAGTATGTTTACTAGTGATGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10832#1 -----------------TCCTGGCATACCACCAGCCTGGTACACCTTCGTAATTATCGGC 43 consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 CGTTTCACTATAGGCGTAATTACTAACCAATCCAGTCAGGATTTCTGTGGATTTTCATCC 60 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ------------------------------------------------------------ consensus_10832#1 GCACAGACCTTCCCCAACTCCACAGAGCCGCCACCAGTGCCACCTGAAGACGTGCAAATT 103 consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 GTATTCAATTATTTCGACACAAACGTGGTGTTTCTGTATTCGCTTAACGGCTATTAGAGA 120 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ------------------------------------------------------------ consensus_10832#1 ACATCCGCTAAAGGGACAGATGAGCCAATTAGTACCTTTGTGCGTGGTCGTGGCTCAGGT 163 consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 AACTA---TAGTAGTCCGGATATAACACTCGATAGTTTAGCGTACTCAACTATCCTTCAT 177 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ------------------------------------------------------------ consensus_10832#1 AGGGGAACACCTCGAGGAATGCGTGTAGGTAGAGGGCAGGGGCCACGAATAGCTCCGACA 223 consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 TTATCTCATATTCATGCAAGGTTTGTGTATTCGTGTTTATTTCCTTAGGTCATTGCTAGA 237 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ---------------------------------------TCGAGGCCNAGAATCGGCACG 21 consensus_10832#1 GAAGCACCTCAAGATTCAGTGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGT--TGT 281 consensus_10832#3 -------------------------------------------GGAGGGTGTGGT--TGT 15 consensus_10832#0 AGAGTGCTCCACACTTCTCAGTCCCCATCCTTCCCGCTCACCTTATTCCTGTTAT-ACAT 296 consensus_10832#4 ----------------------------------------TCCTAGTGCCCCCAC-CCTC 19 consensus_10832#5 -------------------------------TTTTTTTTTTTTTTTCCCGGATAT-ATTT 28 consensus_10832#2 AGGATTACAATGGCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCTTAACATTAAAA 81 consensus_10832#1 CGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGC 341 consensus_10832#3 CGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGC 75 consensus_10832#0 TAGCAACAATCCCACGGCTGTGCCATACAAAGCATCTTACCTACACCGGCTACATAAGGC 356 consensus_10832#4 TACCTCGACCCCCACGTTCACTTCTTG------GTCCTGCAC-CGCGTGCAACATCACGC 72 consensus_10832#5 TAATTAGACATTTTCGTTAGCTAAATTACTATGACGGAACACTCACCCAAGGTTTTTAAG 88 consensus_10832#2 TTGCTTCATATCTGTTTTTCTTCCTATACTATATCCTTATATACAACCTATCTTTTATAT 141 * consensus_10832#1 TATGCGTCAGTCTTCCAAACCAGCCGTTTT---ATTAAAC-AACAAA----GGACTACGC 393 consensus_10832#3 TATGCGTCAGTCTTCCAAACCAGCCGTTTT---ATTAAAC-AACAAA----GGACTACGC 127 consensus_10832#0 GTCGTCTCGGTCGCGGCGGTCGAATAGTATGTGATCGTGC-CGCAGCCCCCACACCACTT 415 consensus_10832#4 ----CCACGATCG----AACCCTCTGCTTTCGAATCCTCG-TCCACCTCTTCTACGGTTT 123 consensus_10832#5 TTAAAGTCTATTCCCC---CTATTTCGATTCAGTTAACGC-CATTTTGGTCCGACAATAT 144 consensus_10832#2 ACTACCACCACTAAATTGACTACTTCTATGAATCCGGTGTTCATCTTGTTGTGCTAACGA 201 * consensus_10832#1 AAAGC-TAATGACGG----CAAAGATGTGT-TTGCAAACATGGTGGCTCACAGAAAAATA 447 consensus_10832#3 AAAGC-TAATGACGG----CAAAGATGTGT-TTGCAAACATGGTGGCTCACAGAAAAATA 181 consensus_10832#0 TCTGC-TTATCTCCAGTC-CTATGATGCGAATTTGAAATCTAGCGGTTCA---GCTAGTC 470 consensus_10832#4 CCAAAGTTGTCAGCGAAA-GAGAAATCAATATCGATCGACTGATGCTCCTCAGGCTCGTT 182 consensus_10832#5 CGAGTCCTGGTTCTGCTATGCANAAGCCGATTTTTGCATGCACGGAATCACGGACTCGCG 204 consensus_10832#2 GGTATGGCAACTTAGGCCGATGCATATGTGTGCCTGGTCCTACGATGTAGCTGACTGACT 261 consensus_10832#1 CAAGAGGTCT--CCGAAGATGTCTACGAGGTGGAGGANAAGGAAAACGAGCCTGAGGAGT 505 consensus_10832#3 CAAGAGGTCT--CCGAAGATGTCTACGAGGTGGAGGAGAAGGAAAACGAGCCTGAGGAGC 239 consensus_10832#0 CAAGTCTTATACCCTCGAACTTTTGCTGGCGACAGTCACAAACAAAAGATGTTGCTTTGC 530 consensus_10832#4 CATTCTACGT---GGTGACCGCCTGTCACGACCAGACGAGAAAGAACGAGAACGCCGTCC 239 consensus_10832#5 CACACGTTTC-CTCGCGGTAGTTAAGGCGTTACCGCGCGAGTTTAACAGGTACGTAACAC 263 consensus_10832#2 GACCATTCTCAGGTGCC-TGGTAAATGGGTTAATTAGAAAGATTTGAAGGCGGATGATTT 320 * consensus_10832#1 ATTAG---NCGATCGAT-ATTGATTT-CTCTTTCGCTGACAACTTTGGAAACCGTAGAAG 560 consensus_10832#3 ATCAG---TCGATGGAG-ATTGATTT-CTCTTTCGCTGACAACTTTGGAAACCGTAGAAG 294 consensus_10832#0 TCAAC---AGACTAAAG-ACT--TCT-ATTTTCAGTTCGCACCGTGGGCGTCCTTCATTC 583 consensus_10832#4 ATTAC---GTCGCGGAGTAACCGATC-GTCTTCGG--CGGTTTGGAGTTGGTCGGCCATA 293 consensus_10832#5 CTAGT---ATGTTTACT-AGTGATGT-TTC------------------------------ 288 consensus_10832#2 ATAAGTAAGAGTAAAACTGTTGACACGATTTGCGAGTTATAAAAAATCATATCCAGCCTT 380 * consensus_10832#1 AGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGT-GATGTTGCACGCGGTG 619 consensus_10832#3 AGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGT-GATGTTGTAC------ 347 consensus_10832#0 TCCTGGCC--TGTTTCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTG 641 consensus_10832#4 TTTTGCTCTTTGTACCCTGACCTCTC-GTCCATC--TACCTTATGGCCATCCATGCC--- 347 consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 GGTGGGGCACTAATCCTCAATCAACTCATTAACAATTATATTGAACTCTGTTGATAAATG 440 consensus_10832#1 CAGGACCAAGAAGTGAACGTGGGGGTCGAGGAAGAGGAATGT-TTGGTCGAGGTCGTGGG 678 consensus_10832#3 -----TTTAAGTGTGAACTTG----TTCAGCCTCCTTATTNT-ATTTACATGGGAGAAAG 397 consensus_10832#0 AA--TCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTT-CTACTCGAAGACG--GA 696 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 TACACTAGCAAGTTAGGATGGTCAGTAGTAAACCAGACTCACATTTGATAACAACAACCC 500 consensus_10832#1 ATGCCATTCAATTCAAATCGAGACTTCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTG 738 consensus_10832#3 ATAACATGATAATGAT-------------------------------------------- 413 consensus_10832#0 TTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGA 756 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ACGTGCCTTCACTCCTTGTTTCCGTTCAGATCTTAAGTTGTTGGATACCT---------- 550 consensus_10832#1 ACTTTTACCTAAGTGCTTTTGTAATGATGAACTGTTATCCCTGTCCTATGCAATGCGGAA 798 consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 TGTGGGACGTGAGTTA------AATGATGTTTCGAATGACGGTTTGTTGATTCAGGAAAA 810 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ------------------------------------------------------------ consensus_10832#1 ACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGT 858 consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 ACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTC 870 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ------------------------------------------------------------ consensus_10832#1 AGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGT 918 consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 CGCGGTTATGATTCCCGTCACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGT 930 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ------------------------------------------------------------ consensus_10832#1 CTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAAC 978 consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 GCCG-AAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGC 989 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ------------------------------------------------------------ consensus_10832#1 GAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGC 1038 consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 CATACGGTGTTACACTTCAGCCTTCTGAGTTTCCCAGGTCCCCTAGTGTTGATGTTTCTT 1049 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ------------------------------------------------------------ consensus_10832#1 ACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATG 1098 consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 TCAGTAATTCTAATGGTAACGGCCTGTCTTCGACGGACAATAGAATGTTGCTGGCGGATC 1109 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ------------------------------------------------------------ consensus_10832#1 CGTCAGTCTTCCAAACCAGCCGTTTTAT--TAAACAACAAAGGACTACGCAAAG------ 1150 consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 CTTCAGTCTTGCCACCACACTAAAGTACGCTGTTTAACTCGTGACTGTGGGTCTAGGGAT 1169 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ------------------------------------------------------------ consensus_10832#1 ------------------------------------------------------------ consensus_10832#3 ------------------------------------------------------------ consensus_10832#0 TCGAAAGTTCCTGGTCCTCAGCTACATGTTACGAATGGAGTAAGCCCAACACAAATCTTT 1229 consensus_10832#4 ------------------------------------------------------------ consensus_10832#5 ------------------------------------------------------------ consensus_10832#2 ------------------------------------------------------------ consensus_10832#1 ------------------------ consensus_10832#3 ------------------------ consensus_10832#0 CAGCTTCCAACTTAATCTTTCGAA 1253 consensus_10832#4 ------------------------ consensus_10832#5 ------------------------ consensus_10832#2 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||