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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1253 fasta sequence
[CGTTTCACTATAGGCGTAATTACTAACCAATCCAGTCAGGATTTCTGTGGATTTTCATCCGTATTCAATTATTTCGACACAAACGTGGTGTTTCTGTATTCGCTTAACGGCTATTAGAGAAACTATAGTAGTCCGGATATAACACTCGATAGTTTAGCGTACTCAACTATCCTTCATTTATCTCATATTCATGCAAGGTTTGTGTATTCGTGTTTATTTCCTTAGGTCATTGCTAGAAGAGTGCTCCACACTTCTCAGTCCCCATCCTTCCCGCTCACCTTATTCCTGTTATACATTAGCAACAATCCCACGGCTGTGCCATACAAAGCATCTTACCTACACCGGCTACATAAGGCGTCGTCTCGGTCGCGGCGGTCGAATAGTATGTGATCGTGCCGCAGCCCCCACACCACTTTCTGCTTATCTCCAGTCCTATGATGCGAATTTGAAATCTAGCGGTTCAGCTAGTCCAAGTCTTATACCCTCGAACTTTTGCTGGCGACAGTCACAAACAAAAGATGTTGCTTTGCTCAACAGACTAAAGACTTCTATTTTCAGTTCGCACCGTGGGCGTCCTTCATTCTCCTGGCCTGTTTCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTGAATCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTTCTACTCGAAGACGGATTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG-AATGACGGTTTGT-TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC-ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC-GGTGTTACACTTCAGCCTTCTGAGTTTCCCAGGTCCCCTAGTGTTGATGTTTCTTTCAGTAATTCTAATGGTAACGGCCTGTCTTCGACGGACAATAGAATGTTGCTGGCGGATCCTTCAGTCTTGCCACCACACTAAAGTACGCTGTTTAACTCGTGACTGTGGGTCTAGGGATTCGAAAGTTCCTGGTCCTCAGCTACATGTTACGAATGGAGTAAGCCCAACACAAATCTTTCAGCTTCCAACTTAATCTTTCGAA]
[-] EMBL CD178473 [CGTTTCACTATAGGCGTAATTACTAACCAATCCAGTCAGGATTTCTGTGGATTTTCATCCGTATTCAATTATTTCGACACAAACGTGGTGTTTCTGTATTCGCTTAACGGCTATTAGAGAAACTATAGTAGTCCGGATATAACACTCGATAGTTTAGCGTACTCAACTATCCTTCATTTATCTCATATTCATGCAAGGTTTGTGTATTCGTGTTTATTTCCTTAGGTCATTGCTAGAAGAGTGCTCCACACTTCTCAGTCCCCATCCTTCCCGCTCACCTTATTCCTGTTATACATTAGCAACAATCCCACGGCTGTGCCATACAAAGCATCTTACCTACACCGGCTACATAAGGCGTCGTCTCGGTCGCGGCGGTCGAATAGTATGTGATCGTGCCGCAGCCCCCACACCACTTTCTGCTTATCTCCAGTCCTATGATGCGAATTTGAAATCTAGCGGTTCAGCTAGTCCAAGTCTTATACCCTCGAACTTTTGCTGGCGACAGTCACAAACAAAAGATGTTGCTTTGCTCAACAGACTAAAGACTTCTATTTTCAGTTCGCAC ]
[+] EMBL CD091632 [ ATGTGATCGTGCCGCAGCCCCCACACCACTTTCTGCTTATCTCCAGTCCTATGATGCGAATTTGAAATCTAGCGGTTCAGCTAGTCCAAGTCTTATACCCTCGAACTTTTGCTGGCGACAGTCACAAACAAAAGATGTTGCTTTGCTCAACAGACTAAAGACTTCTATTTTCAGTTCGCACCGTGGGCGTCCTTCATTCTCCTGGCCTGTTTCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTGAATCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTTCTACTCGAAGACGGATTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCAC ]
[+] EMBL CD186171 [ CAAACAAAAGATGTTGCTTTGCTCAACGGACTAAAGACTTCTATTTTCAGTTCGCACCGTGGGCGTCCTTCATTCTCCTGGCCTGTTCCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTGAATCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTTCTACTCGAAGACGGATTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTNTCCCAGGTCCCCTAGTGTTGATGTTTCTTTCAGTAATTCTAATGGTAACGGCCTGTCTTCG ]
[-] EMBL CD091243 [ ACAAAAGATGTTGCTTTGCTCAACAGACTAAAGACTTCTATTTTCAGTTCGCACCGTGGGCGTCCTTCATTCTCCTGGCCTGTTTCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTGAATCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTTCTACTCGAAGACGGATTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCGCCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAA ]
[-] EMBL CD091251 [ CAGTTCGCACCGTGGGCGTCCTTCATTCTCCTGGCCTGTTTCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTGAATCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTTCTACTCGAAGACGGATTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCGCCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAA ]
[-] EMBL CD184871 [ TTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGCAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTTTCCCAGGTCCCCTAGTGTTGATGTTTCTTTCAGTAATTCTAATGGTAACGGCCTGTCTTCGACGGACAATAGAATGTTGCTGGCGGATCCTTCAGTCTTGCCACCACACTAAAGTACGCTGTTTAACTCGTGACTGTGGGTCTAGGGATTCGAAAG ]
[+] EMBL CD139977 [ CAGATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGT ]
[+] EMBL CD148663 [ GATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGTGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTT ]
[+] EMBL CD098389 [ GATGATGTGACCGTAGAT AAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTT ]
[+] EMBL CD111090 [ GATGATGTGACCGTAGAT AAGTTGCTCTGGATGTGGGACGTGAGTTAAATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCCATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTT ]
[-] EMBL CD110903 [ ATGATGTGACCGTAGATGAAGTTGCTCTGGATGTGGGACGTGAGTT AATGATGTTTCG AATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAGTAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATACAGGTGTTACACTTCAGCCTTCTGAGTTT ]
[-] EMBL CD195180 [ TCGAAATGACGGTTTGT TGATTCAGGAAAAACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAANTCAGTTAATCTATCGTCCGCGGTTATGATTCCCGTC ACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCNGAAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGCCATAC GGTGTTACACTTCAGCCTTCTGAGTTTCCCAGGTCCCCTAGTGTTGATGTTTCTTTCAGTAATTCTAATGGTAACGGCCTGTCTTCGACGGACAATAGAATGTTGCTGGCGGATCCTTCAGTCTTGCCACCAC CTAAAGTACGCTGTTTAACTCGTGACTGTGGGTCTAGGGATTCGAAAGTTCCTGGTCCTCAGCTACATGTTACGAATGGAGTAAGCCCAACACAAATCTTTCAGCTTCCAACTTAATCTTTCGAA]
[+] EMBL CD112790 [ CG AATGACGGTTTGTCTGATTCAGGAAAAACATTCTCCCTTGCAGCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCCATCGTCCGCGGTTATGATTCCCGTCGACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGTGCCGAAGCCTAGCAATAGTTTGGTGTCAACTCATCG ]
consensusID : consensus_10832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1150 fasta sequence
[TCCTGGCATACCACCAGCCTGGTACACCTTCGTAATTATCGGCGCACAGACCTTCCCCAACTCCACAGAGCCGCCACCAGTGCCACCTGAAGACGTGCAAATTACATCCGCTAAAGGGACAGATGAGCCAATTAGTACCTTTGTGCGTGGTCGTGGCTCAGGTAGGGGAACACCTCGAGGAATGCGTGTAGGTAGAGGGCAGGGGCCACGAATAGCTCCGACAGAAGCACCTCAAGATTCAGTGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAGCTAATGACGGCAAAGATGTGTTTGCAAACATGGTGGCTCACAGAAAAATACAAGAGGTCTCCGAAGATGTCTACGAGGTGGAGGANAAGGAAAACGAGCCTGAGGAGTATTAGNCGATCGATATTGATTTCTCTTTCGCTGACAACTTTGGAAACCGTAGAAGAGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGTGATGTTGCACGCGGTGCAGGACCAAGAAGTGAACGTGGGGGTCGAGGAAGAGGAATGTTTGGTCGAGGTCGTGGGATGCCATTCAATTCAAATCGAGACTTCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTGACTTTTACCTAAGTGCTTTTGTAATGATGAACTGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGTCTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAACGAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAG]
[+] EMBL CD112933 [TCCTGGCATACCACCAGCCTGGTACACCTTCGTAATTATCGGCGCACAGACCTTCCCCAACTCCACAGAGCCGCCACCAGTGCCACCTGAAGACGTGCAAATTACATCCGCTAAAGGGACAGATGAGCCAATTAGTACCTTTGTGCGTGGTCGTGGCTCAGGTAGGGGAACACCTCGAGGAATGCGTGTAGGTAGAGGGCAGGGGCCACGAATAGCTCCGACAGAAGCACCTCAAGATTCAGTGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAGCTAATGACGGCAAAGATGTGTTTGCAAACATGGTGGCTCACAGAAAAATACAAGAGGTCTCCGAAGATGTCTACGAGGTGGAGGANAAGGAAAACGAGCCTGAGGAGTATTAGNCGATCGATATTGATTTCTCT ]
[+] EMBL CD184682 [ GCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAGCTAATGACGGCAAAGATGTGTTTGCAAACATGGTGGCTCACAGAAAAATACAAGAGGTCTCCGAAGATGTCTACGAGGTGGAGGAGAAGGAAAACGAGCCTGAGGAGCATCAGTCGATCGATATTGATTTCTCTTTCGCTGACAACTTTGGAAACCGTAGAAGAGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGTGATGTTGCACGCGGTGCAGGACCAAGAAGTGAACGTGGGGGTCGAGGAAGAGGAATGTTTGGTCGAGGTCGTGGGATGCCATTCAATTCAAATCGAGACTTCGAAAATCAGGAT ]
[-] EMBL CD142152 [ GAGGAATGTTTGGTCGAGGTCGTGGGATGCCATTCAATTCAAATCGAGACTTCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTGACTTTTACCTAAGTGCTTTTGTAATGATGAACTGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGTCTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAACGAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGT ]
[-] EMBL CD141568 [ GAC TCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTGACTTTTACCTAAGTGCTTTTGTAATGATGAACTGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGTCTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAACGAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAA ]
[+] EMBL CD148609 [ CTTTTACCTAAGTGCTTTTGTAATGATGAACAGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGTCTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAACGAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACG ]
[-] EMBL CD148632 [ TTTTACCTAAGTGCTTTTGTAATGATGAACTGTTATCCCTGTCCTATGCAATGCGGAAACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGTAGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGTCTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAACGAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAG]
consensusID : consensus_10832#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[TCGAGGCCNAGAATCGGCACGAGGATTACAATGGCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCTTAACATTAAAATTGCTTCATATCTGTTTTTCTTCCTATACTATATCCTTATATACAACCTATCTTTTATATACTACCACCACTAAATTGACTACTTCTATGAATCCGGTGTTCATCTTGTTGTGCTAACGAGGTATGGCAACTTAGGCCGATGCATATGTGTGCCTGGTCCTACGATGTAGCTGACTGACTGACCATTCTCAGGTGCCTGGTAAATGGGTTAATTAGAAAGATTTGAAGGCGGATGATTTATAAGTAAGAGTAAAACTGTTGACACGATTTGCGAGTTATAAAAAATCATATCCAGCCTTGGTGGGGCACTAATCCTCAATCAACTCATTAACAATTATATTGAACTCTGTTGATAAATGTACACTAGCAAGTTAGGATGGTCAGTAGTAAACCAGACTCACATTTGATAACAACAACCCACGTGCCTTCACTCCTTGTTTCCGTTCAGATCTTAAGTTGTTGGATACCT]
[+] EMBL CD083722 [TCGAGGCCNAGAATCGGCACGAGGATTACAATGGCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCTTAACATTAAAATTGCTTCATATCTGTTTTTCTTCCTATACTATATCCTTATATACAACCTATCTTTTATATACTACCACCACTAAATTGACTACTTCTATGAATCCGGTGTTCATCTTGTTGTGCTAACGAGGTATGGCAACTTAGGCCGATGCATATGTGTGCCTGGTCCTACGATGTAGCTGACTGACTGACCATTCTCAGGTGCCTGGTAAATGGGTTAATTAGAAAGATTTGAAGGCGGATGATTTATAAGTAAGAGTAAAACTGTTGACACGATTTGCGAGTTATAAAAAATCATATCCAGCCTTGGTGGGGCACTAATCCTCAATCAACTCATTAACAATTATATTGAACTCTGTTGATAAATGTACACTAGCAAGTTAGGATGGTCAGTAGTAAACCAGACTCACATTTGATAACAACAACCCACGTGCCTTCACTCCTTGTTTCCGTTCAGATCTTAAGTTGTTGGATACCT]
consensusID : consensus_10832#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[GGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAGCTAATGACGGCAAAGATGTGTTTGCAAACATGGTGGCTCACAGAAAAATACAAGAGGTCTCCGAAGATGTCTACGAGGTGGAGGAGAAGGAAAACGAGCCTGAGGAGCATCAGTCGATGGAGATTGATTTCTCTTTCGCTGACAACTTTGGAAACCGTAGAAGAGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGTGATGTTGTACTTTAAGTGTGAACTTGTTCAGCCTCCTTATTNTATTTACATGGGAGAAAGATAACATGATAATGAT]
[+] EMBL CD150386 [GGAGGGTGTGGTTGTCGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATGCGTCAGTCTTCCAAACCAGCCGTTTTATTAAACAACAAAGGACTACGCAAAGCTAATGACGGCAAAGATGTGTTTGCAAACATGGTGGCTCACAGAAAAATACAAGAGGTCTCCGAAGATGTCTACGAGGTGGAGGAGAAGGAAAACGAGCCTGAGGAGCATCAGTCGATGGAGATTGATTTCTCTTTCGCTGACAACTTTGGAAACCGTAGAAGAGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGTGATGTTGTACTTTAAGTGTGAACTTGTTCAGCCTCCTTATTNTATTTACATGGGAGAAAGATAACATGATAATGAT]
consensusID : consensus_10832#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence
[TCCTAGTGCCCCCACCCTCTACCTCGACCCCCACGTTCACTTCTTGGTCCTGCACCGCGTGCAACATCACGCCCACGATCGAACCCTCTGCTTTCGAATCCTCGTCCACCTCTTCTACGGTTTCCAAAGTTGTCAGCGAAAGAGAAATCAATATCGATCGACTGATGCTCCTCAGGCTCGTTCATTCTACGTGGTGACCGCCTGTCACGACCAGACGAGAAAGAACGAGAACGCCGTCCATTACGTCGCGGAGTAACCGATCGTCTTCGGCGGTTTGGAGTTGGTCGGCCATATTTTGCTCTTTGTACCCTGACCTCTCGTCCATCTACCTTATGGCCATCCATGCC]
[+] EMBL CD192908 [TCCTAGTGCCCCCACCCTCTACCTCGACCCCCACGTTCACTTCTTGGTCCTGCACCGCGTGCAACATCACGCCCACGATCGAACCCTCTGCTTTCGAATCCTCGTCCACCTCTTCTACGGTTTCCAAAGTTGTCAGCGAAAGAGAAATCAATATCGATCGACTGATGCTCCTCAGGCTCGTTCATTCTACGTGGTGACCGCCTGTCACGACCAGACGAGAAAGAACGAGAACGCCGTCCATTACGTCGCGGAGTAACCGATCGTCTTCGGCGGTTTGGAGTTGGTCGGCCATATTTTGCTCTTTGTACCCTGACCTCTCGTCCATCTACCTTATGGCCATCCATGCC]
consensusID : consensus_10832#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence
[TTTTTTTTTTTTTTTCCCGGATATATTTTAATTAGACATTTTCGTTAGCTAAATTACTATGACGGAACACTCACCCAAGGTTTTTAAGTTAAAGTCTATTCCCCCTATTTCGATTCAGTTAACGCCATTTTGGTCCGACAATATCGAGTCCTGGTTCTGCTATGCANAAGCCGATTTTTGCATGCACGGAATCACGGACTCGCGCACACGTTTCCTCGCGGTAGTTAAGGCGTTACCGCGCGAGTTTAACAGGTACGTAACACCTAGTATGTTTACTAGTGATGTTTC]
[+] EMBL AI395459 [TTTTTTTTTTTTTTTCCCGGATATATTTTAATTAGACATTTTCGTTAGCTAAATTACTATGACGGAACACTCACCCAAGGTTTTTAAGTTAAAGTCTATTCCCCCTATTTCGATTCAGTTAACGCCATTTTGGTCCGACAATATCGAGTCCTGGTTCTGCTATGCANAAGCCGATTTTTGCATGCACGGAATCACGGACTCGCGCACACGTTTCCTCGCGGTAGTTAAGGCGTTACCGCGCGAGTTTAACAGGTACGTAACACCTAGTATGTTTACTAGTGATGTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10832#1 -----------------TCCTGGCATACCACCAGCCTGGTACACCTTCGTAATTATCGGC 43
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 CGTTTCACTATAGGCGTAATTACTAACCAATCCAGTCAGGATTTCTGTGGATTTTCATCC 60
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ------------------------------------------------------------
consensus_10832#1 GCACAGACCTTCCCCAACTCCACAGAGCCGCCACCAGTGCCACCTGAAGACGTGCAAATT 103
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 GTATTCAATTATTTCGACACAAACGTGGTGTTTCTGTATTCGCTTAACGGCTATTAGAGA 120
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ------------------------------------------------------------
consensus_10832#1 ACATCCGCTAAAGGGACAGATGAGCCAATTAGTACCTTTGTGCGTGGTCGTGGCTCAGGT 163
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 AACTA---TAGTAGTCCGGATATAACACTCGATAGTTTAGCGTACTCAACTATCCTTCAT 177
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ------------------------------------------------------------
consensus_10832#1 AGGGGAACACCTCGAGGAATGCGTGTAGGTAGAGGGCAGGGGCCACGAATAGCTCCGACA 223
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 TTATCTCATATTCATGCAAGGTTTGTGTATTCGTGTTTATTTCCTTAGGTCATTGCTAGA 237
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ---------------------------------------TCGAGGCCNAGAATCGGCACG 21
consensus_10832#1 GAAGCACCTCAAGATTCAGTGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGT--TGT 281
consensus_10832#3 -------------------------------------------GGAGGGTGTGGT--TGT 15
consensus_10832#0 AGAGTGCTCCACACTTCTCAGTCCCCATCCTTCCCGCTCACCTTATTCCTGTTAT-ACAT 296
consensus_10832#4 ----------------------------------------TCCTAGTGCCCCCAC-CCTC 19
consensus_10832#5 -------------------------------TTTTTTTTTTTTTTTCCCGGATAT-ATTT 28
consensus_10832#2 AGGATTACAATGGCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCTTAACATTAAAA 81
consensus_10832#1 CGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGC 341
consensus_10832#3 CGGCACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGC 75
consensus_10832#0 TAGCAACAATCCCACGGCTGTGCCATACAAAGCATCTTACCTACACCGGCTACATAAGGC 356
consensus_10832#4 TACCTCGACCCCCACGTTCACTTCTTG------GTCCTGCAC-CGCGTGCAACATCACGC 72
consensus_10832#5 TAATTAGACATTTTCGTTAGCTAAATTACTATGACGGAACACTCACCCAAGGTTTTTAAG 88
consensus_10832#2 TTGCTTCATATCTGTTTTTCTTCCTATACTATATCCTTATATACAACCTATCTTTTATAT 141
*
consensus_10832#1 TATGCGTCAGTCTTCCAAACCAGCCGTTTT---ATTAAAC-AACAAA----GGACTACGC 393
consensus_10832#3 TATGCGTCAGTCTTCCAAACCAGCCGTTTT---ATTAAAC-AACAAA----GGACTACGC 127
consensus_10832#0 GTCGTCTCGGTCGCGGCGGTCGAATAGTATGTGATCGTGC-CGCAGCCCCCACACCACTT 415
consensus_10832#4 ----CCACGATCG----AACCCTCTGCTTTCGAATCCTCG-TCCACCTCTTCTACGGTTT 123
consensus_10832#5 TTAAAGTCTATTCCCC---CTATTTCGATTCAGTTAACGC-CATTTTGGTCCGACAATAT 144
consensus_10832#2 ACTACCACCACTAAATTGACTACTTCTATGAATCCGGTGTTCATCTTGTTGTGCTAACGA 201
*
consensus_10832#1 AAAGC-TAATGACGG----CAAAGATGTGT-TTGCAAACATGGTGGCTCACAGAAAAATA 447
consensus_10832#3 AAAGC-TAATGACGG----CAAAGATGTGT-TTGCAAACATGGTGGCTCACAGAAAAATA 181
consensus_10832#0 TCTGC-TTATCTCCAGTC-CTATGATGCGAATTTGAAATCTAGCGGTTCA---GCTAGTC 470
consensus_10832#4 CCAAAGTTGTCAGCGAAA-GAGAAATCAATATCGATCGACTGATGCTCCTCAGGCTCGTT 182
consensus_10832#5 CGAGTCCTGGTTCTGCTATGCANAAGCCGATTTTTGCATGCACGGAATCACGGACTCGCG 204
consensus_10832#2 GGTATGGCAACTTAGGCCGATGCATATGTGTGCCTGGTCCTACGATGTAGCTGACTGACT 261
consensus_10832#1 CAAGAGGTCT--CCGAAGATGTCTACGAGGTGGAGGANAAGGAAAACGAGCCTGAGGAGT 505
consensus_10832#3 CAAGAGGTCT--CCGAAGATGTCTACGAGGTGGAGGAGAAGGAAAACGAGCCTGAGGAGC 239
consensus_10832#0 CAAGTCTTATACCCTCGAACTTTTGCTGGCGACAGTCACAAACAAAAGATGTTGCTTTGC 530
consensus_10832#4 CATTCTACGT---GGTGACCGCCTGTCACGACCAGACGAGAAAGAACGAGAACGCCGTCC 239
consensus_10832#5 CACACGTTTC-CTCGCGGTAGTTAAGGCGTTACCGCGCGAGTTTAACAGGTACGTAACAC 263
consensus_10832#2 GACCATTCTCAGGTGCC-TGGTAAATGGGTTAATTAGAAAGATTTGAAGGCGGATGATTT 320
*
consensus_10832#1 ATTAG---NCGATCGAT-ATTGATTT-CTCTTTCGCTGACAACTTTGGAAACCGTAGAAG 560
consensus_10832#3 ATCAG---TCGATGGAG-ATTGATTT-CTCTTTCGCTGACAACTTTGGAAACCGTAGAAG 294
consensus_10832#0 TCAAC---AGACTAAAG-ACT--TCT-ATTTTCAGTTCGCACCGTGGGCGTCCTTCATTC 583
consensus_10832#4 ATTAC---GTCGCGGAGTAACCGATC-GTCTTCGG--CGGTTTGGAGTTGGTCGGCCATA 293
consensus_10832#5 CTAGT---ATGTTTACT-AGTGATGT-TTC------------------------------ 288
consensus_10832#2 ATAAGTAAGAGTAAAACTGTTGACACGATTTGCGAGTTATAAAAAATCATATCCAGCCTT 380
*
consensus_10832#1 AGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGT-GATGTTGCACGCGGTG 619
consensus_10832#3 AGGTGGACGAGGATTCGAAAGCAGAGGGTTCGATCGTGGGCGT-GATGTTGTAC------ 347
consensus_10832#0 TCCTGGCC--TGTTTCTGAAACTATCTGCCCACCAATACCCTTCGAACCTCTACTTATTG 641
consensus_10832#4 TTTTGCTCTTTGTACCCTGACCTCTC-GTCCATC--TACCTTATGGCCATCCATGCC--- 347
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 GGTGGGGCACTAATCCTCAATCAACTCATTAACAATTATATTGAACTCTGTTGATAAATG 440
consensus_10832#1 CAGGACCAAGAAGTGAACGTGGGGGTCGAGGAAGAGGAATGT-TTGGTCGAGGTCGTGGG 678
consensus_10832#3 -----TTTAAGTGTGAACTTG----TTCAGCCTCCTTATTNT-ATTTACATGGGAGAAAG 397
consensus_10832#0 AA--TCCAAAGGTTCCACAGATCATCGTTCCTCTCCTATTTT-CTACTCGAAGACG--GA 696
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 TACACTAGCAAGTTAGGATGGTCAGTAGTAAACCAGACTCACATTTGATAACAACAACCC 500
consensus_10832#1 ATGCCATTCAATTCAAATCGAGACTTCGAAAATCAGGATGGCCCAGATCGTCAGTAAGTG 738
consensus_10832#3 ATAACATGATAATGAT-------------------------------------------- 413
consensus_10832#0 TTGTCCAACAACTTCCAGGAAGCATCCAGATGATGTGACCGTAGATGAAGTTGCTCTGGA 756
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ACGTGCCTTCACTCCTTGTTTCCGTTCAGATCTTAAGTTGTTGGATACCT---------- 550
consensus_10832#1 ACTTTTACCTAAGTGCTTTTGTAATGATGAACTGTTATCCCTGTCCTATGCAATGCGGAA 798
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 TGTGGGACGTGAGTTA------AATGATGTTTCGAATGACGGTTTGTTGATTCAGGAAAA 810
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ------------------------------------------------------------
consensus_10832#1 ACACTTTCTGATGCATCACCAGGCTTTCACAACCCCGTTGATAATAGCCTTTTATTCTGT 858
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 ACATTCTCCCTTGCACCCTCAGAACAATCTAACTCCAAAGAAATCAGTTAATCTATCGTC 870
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ------------------------------------------------------------
consensus_10832#1 AGGGGTCCAAGACAATATGGTCGAAGAGATGGGAATTGGAATTCTCAGGATGTTGATGGT 918
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 CGCGGTTATGATTCCCGTCACGAATCCAAACATGTGTCAAGCCTCCCAGGCGATGTTGGT 930
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ------------------------------------------------------------
consensus_10832#1 CTAATAATGCCTGAGAGTGGTGACTCAGAGCAAGTTGTGCGTTTCGCAGACGACCGTAAC 978
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 GCCG-AAGCCTAGCAATAGTTTGGTGTCAACTCATCGCCTCTGGCGAAAGCTAGCAAGGC 989
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ------------------------------------------------------------
consensus_10832#1 GAAGTCGAGGACCAGCCAGAGCATGCCACAGCTGAGAATGAGGAGGGTGTGGTTGTCGGC 1038
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 CATACGGTGTTACACTTCAGCCTTCTGAGTTTCCCAGGTCCCCTAGTGTTGATGTTTCTT 1049
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ------------------------------------------------------------
consensus_10832#1 ACAGAAACCCCAGTTGAGGAAGAACCGAAAAGCTACACACTAGAAGAATACAAAGCTATG 1098
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 TCAGTAATTCTAATGGTAACGGCCTGTCTTCGACGGACAATAGAATGTTGCTGGCGGATC 1109
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ------------------------------------------------------------
consensus_10832#1 CGTCAGTCTTCCAAACCAGCCGTTTTAT--TAAACAACAAAGGACTACGCAAAG------ 1150
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 CTTCAGTCTTGCCACCACACTAAAGTACGCTGTTTAACTCGTGACTGTGGGTCTAGGGAT 1169
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ------------------------------------------------------------
consensus_10832#1 ------------------------------------------------------------
consensus_10832#3 ------------------------------------------------------------
consensus_10832#0 TCGAAAGTTCCTGGTCCTCAGCTACATGTTACGAATGGAGTAAGCCCAACACAAATCTTT 1229
consensus_10832#4 ------------------------------------------------------------
consensus_10832#5 ------------------------------------------------------------
consensus_10832#2 ------------------------------------------------------------
consensus_10832#1 ------------------------
consensus_10832#3 ------------------------
consensus_10832#0 CAGCTTCCAACTTAATCTTTCGAA 1253
consensus_10832#4 ------------------------
consensus_10832#5 ------------------------
consensus_10832#2 ------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||