These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1169 fasta sequence [CGACTGACAATAAGCTTGCAACAGTACATGCATTCACTTCAGTAGATGGTGGTGTATGATGTTTGG-TGA-TTCAAAAAATACCACTTCATTGACTGAGTCAATAGGTTGGGTAATTTTAGAGCTTGTAGTAACAACCACCGAAGAAGGATCTGAATGAGTTACAACATTTTGTGGAAATGTTACAGTGATATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGTCGCTGTGGTCATCGGTGGTTGTGCTTGAAACTCGTCGCGTGGATGATGTTGAATAAGTTGAGTAGGTGTCGGAGAAATATGTCCACTAGATGGTAGTTGTTGATTTGGAGAAGGCAAAGCAGACGGAGTTGTTGTTGTGATTGTTCCATAATTTGATGATGGATAAACTGTTAGATTTGTAGAGGAAGAATTTAAAACTGATCTTGGGTCATTAGAAATTGGCACAGTTTGTGCTGCGTAATTACTACCAGTCGGTGGAATAACATGGGGCCCTGGTTGTATTGGAGGATTAGAGTGTAGGACTGGATTCATTACTACTGGACAAGAACCTTGAGTACTAGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTGTTGGGGTAAAACGACATTACTGCTTTGTTGTTGTTGTTGATTATGATGATGCATTAAAGCTCTGGCACGATTCTCCATTGTTTTAATCACTTCCATATGAAATGCTTGACGTTCTTGTAATAATTGTTGACGCATTTGCTCAATCATTTCATATTCACGTTCCATGATACTTTCTAATTCCTGAATTTGTTTAAGTTTTATATCGAGTTTTTTCAACTGTGTTTCAACTAATTGAGCAACTAAACCTTTGATACGTTTTTCTTCAACACTGGCTAAATGACGTGCTTTAATAGCTGCAGCAGCTAATGCACACGCTGCAGCTGTACCTAAACTATTCGGATTCGGTGGTAATGAAGATGATAACGATGAAGTAGGAATATTCTGTTGTATTGTTGATTGTTTCAATAAATTCTCTGTAATTTTCTTAATTAGATTATTTGAAATGA] [-] EMBL CD138378 [CGACTGACAATAAGCTTGCAACAGTACATGCATTCACTTCAGTAGATGGTGGTGTATGATGTCTGG TGATTTCAAAAAATACCACTTCATTGACTGAGTCAATAGGTTGGGTAATTTTAGAGCTTGTAGTAACAACCACCGAAGAAGGATCTGAATGAGTTACAACATTTTGTGGAAATGTTACAGTGATATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAGGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTT ] [-] EMBL CD135480 [ TAAGCTTGCAACAGTACATGCATTCACTTCAGTAGATGGTGGTGTATGATGTTTGGTTGA TTCAAAAAATACCACTTCATTGACTGAGTCAATAGGTTGGGTAATTTTAGAGCTTGTAGTAACAACCACCGAAGAAGGATCTGAATGAGTTACAACATTTTGTGGAAATGTTACAGTGATATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAGGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGTCGCTGTGGTCATCGGTGGTTGTGCTTGCAACTCATCGCGTGGATGATGTTGAATAAGTTGAGTAGGTGTt ] [+] EMBL CD093050 [ GCAACAGTACATGCATTCACTTCAGTAGATGGTGGTGTATGATGTTTGGTTGA TTCAAAAAATACCACTTCATTGACTGAATCAATAGGTTGGGTAATTTTAGAGCTTGTAGTAACAACCACCGAAGAAGGATCTGAATGAGTTACAACATTTTGTGGAAATGTTACAGTGATATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTACACGTTGGCTGTGTTGGTGTTGATGTCACT ] [-] EMBL CD154351 [ TATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGTCGCTGTGGTCATCGGTGGTTGTGCTTGAAACTCGTCGCGTGGATGATGTTGAATAAGTTGAGTAGGTGT ] [-] EMBL SMT14523 [ gnTCTGATGTAATAGGATAGACAGANTCTGACCNAGAATNACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGTCGCTGTGGTCATCGGTGGTTGTGCTTGAAACTCGTNGC ] [-] EMBL CD114605 [ AGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGTCGCTGTGGTCATCGGTGGTTGTGCTTGAAACTCGTCGCGTGGATGATGTTGAATAAGTTGAGTAGGTGTCGGAGAAATATGTCCACTAGATGGTAGTTGTTGATTTGGAGAAGGCAAAGCAGACGGAGTTGTTGTTGTGATTGTTCCATAATTTGATGATGGATAAACTGTTAGATTTGTAGAGGAAGAATTTAAAACTGATCTTGGGTCATTAGAAATTGGCACAGTTTGTGCTG ] [+] EMBL CD187430 [ GTGGTTGTGCTTGAAACTCGTCGCGTGGAT ATGTTGAATAAGTTGAGTAGGTGTCGGAGAAATATGTCCACTAGATGGTAGTTGTTGATTTGGAGAAGGCAAAGCAGACGGAGTTGTTGTTGTGATTGTTCCATAATTTGATGATGGATAAACTGTTAGATTTGTAGAGGAAGAATTTAAAACTGATCTTGGGTCATTAGAAATTGGCACAGTTTGTGCTGCGTAATTACTACCAGTCGGTGGAATAACATGGGGCCCTGGTTGTATTGGAGGATTAGAGTGTAGGACTGGATTCATTACTACTGGACAAGAACCTTGAGTACTAGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTGTTGGGGTAAAACGACATTACTGCTTTGTTGTTGTTGTTGATTATGATGATGCATTAAAGCTCTGGCACGATTCT ] [+] EMBL CD138780 [ TGATTGTTCCATAATTTGATGATGGATAAACTGTTAGATTTGTAGAGGAAGAATTTAAAACTGATCTTGGGTCATTAGAAATTGGCACGGTTTGTGCTGCGTAATTACTACCAGTCGGTGGAATAACATGGGGCCCTGGTTGTATTGGAGGATTAGAGTGTAGGACTGGATTCATTACTACCGGACAAGAACCTTGAGTACTAGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTGTTGGGGTAAAACGACATTACTGCTTTGTTGTTGTTGTTGATTATGATGA ] [-] EMBL CD138778 [ GATTGTTCCATAATTTGATGATGGATAAACTGTTAGATTTGTAGAGGAAGAATTTAAAACTGATCTTGGGTCATTAGAAATTGGCACGGTTTGTGCTGCGTAATTACTACCAGTCGGTGGAATAACATGGGGCCCTGGTTGTATTGGAGGATTAGAGTGTAGGACTGGATTCATTACTACTGGACAAGAACCTTGAGTACTAGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTGTTGGGGTAAAACGACATTACTGCTTTGTTGTTGTTGTTGATTATGATGAT ] [-] EMBL CD155375 [ gtTGGAATAACATGGGGCCCTGGTTGTATTGGAGGATTAGAGTGTAGGACTGGATTCATTACTACTGGACAAGAACCTTGAGTACTAGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTGTTGGGGTAAAACGACATTACTGCTTTGTTGTTGTTGTTGATTATGATGATGCATTAAAGCTCTGGCACGATTCTCCATTGTTTTAATCACTTCCATATGAAATGCTTGACGTTCTTGTAATAATTGTTGACGCATTTGCTCAATCATTTCATATTCACGTTCCATGATACTTTCTAATTCCTGAATTTGTTTAAGTTTTATATCGAGTTTTTTCAACTGTGTTTCAACTAATTGAGCAACTAAACCTTTGATACGTTTTTCTTCAACACTGGCTAAATGACGTGCTTTAATAGCTGCAGCAGCTAATGCACACGCTGCAGCTGTACCTAAACTATTCG ] [+] EMBL CD192382 [ TTGTTGTTGTTGATTATGATGATGCATTAAAGCTCTGGCACGATTCTCCATTGTTTTAATCACTTCCATATGAAATGCTTGACGTTCTTGTAATAATTGTTGACGCATTTGCTCAATCATTTCATATTCACGTTCCATGATACTTTCTAATTCCTGAATTTGTTTAAGTTTTATATCGAGTTTTTTCAACTGTGTTTCAACTAATTGAGCAACTAAACCTTTGATACGTTTTTCTTCAACACTGGCTAAATGACGTGCTTTAATAGCTGCAGCAGCTAATGCACACGCTGCAGCTGTACCTAAACTATTCGGATTCGGTGGTAATGAAGATGATAACGATGAAGTAGGAATATTCTGTTGTATTGTTGATTGTTTCAATAAATTCTCTGTAATTTTCTTAATTAGATTATTTGAAATGA] consensusID : consensus_10868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1060 fasta sequence [GTGGTATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAATCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGATCACTATAGTCGATCTGGAAAAGTCACTAGTGGTCAGAAGAGAGTTGTAGGTGTTCTTTTGGGTTCACTAAATGGAAGCATCTTGGATGTTAGCAACAGCTTTGCAGTTCCTTTCGAAGAAGATACCACAGATCCAGATGTTTGGTTTCTCGACCACGATTATTTGGAAAGCATGTTTACTATGTTCAAAAAAGTTAACGCTCGAGAGAAGATTGTGGGTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATATTAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGTAAGAAGGAAAGAAATTGATGGATTGCCTACTGAGGCTTATATCGCAGTTGAAGAAGTTCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCTGAAGAAGCTGAAGAGGTTGGCGTTGAACACTTACTGAGGGATATTAAGGATACATCTCTTGGTTCCTTATCGCAAAGAATCGGTTGTCAGTTAGATGGATTATCCGGTTTATTACGACAGTTATATGAAATTCGTGAATACTTA-CAGTTGGTTTCTTCTGACAAG-CTTCCTGTTAACCATCGTATAATATACCAGTTGCAAGATATTTTCAATCTACTTCCTGATCTTAAACTGCATGATACAGTCCGTGCAATTCACGTCAATACTAATGATCAAAGGCTGGTTATTAATGTGGCTGCTATAATGAGAGCAATACTCGCTTTACACGATCTAATTAGTAACAAATTAACGAATCGTGAAACTGAGAGAAATGAAGAAGGCTTAGGTGGTAATACAGAGTCGAAAAAAGTTCCTATTGGTCCTGTTGATCAAAGTAAGCGTACTACGCATAAATCTGATAACCTAGATA] [+] EMBL CD114530 [GTGGTATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAATCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGATCACTATAGTCGATCTGGAAAAGTCACTAGTGGTCAGAAGAGAGTTGTAGGTGTTCTTTTGGGTTCACTAAATGGAAGCATCTTGGATGTTAGCAACAGCTTTGCAGTTCCTTTCGAAGAAGATACCACAGATCCAGATGTTTGGTTTCTCGACCACGATTATTTGGAAAGCATGTTTACTATGTTCAAAAAAGTTAACGCTCGAGAGAAGAT ] [-] EMBL CD156466 [ GATCTGGAAAAGTCACTAGTGGTCAGAAGAGAGTTGTAGGTGTTCTTTTGGGTTCACTAAATGGAAGCATCTTGGATGTTAGCAACAGCTTTGCAGTTCCTTTCGAAGAAGATACCACAGATCCAGATGTTTGGTTTCTCGACCACGATTATTTGGAAAGCATGTTTACTATGTTCAAAAAAGTTAACGCTCGAGAGAAGATTGTGGGTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATATTAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGTAAGAAGGAAAGAAATTGATGGATTGCCTACTGAGGCTTATATCGCAGTTGAAGAAGTTCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCT ] [-] EMBL CD156392 [ tCAGCAGTTCAGTACCCTGTGAACAAGATACCACAGATCCAGATGTTTGGTTTCTCGACCACGATTATTTGGAAAGCATGTTTACTATGTTCAAAAAAGTTAACGCTCGAGAGAAGATTGTGGGTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATATTAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGTAAGAAGGAAAGAAATTGATGGATTGCCTACTGAGGCTTATATCGCAGTTGAAGAAGTTCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCT ] [+] EMBL CD083446 [ atcggcACGAGGATTATTTGGAAAGCATGTTTACTATG TCAAAAAAGTTAACGCTCGAGAGAAGATTGTGGGTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATATTAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGTAAGAAGGAAAGAAATTGATGGATTGCCTACTGAGGCTTATATCGCAGTTGAAGAAGTTCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCTGAAGAAGCTGAAGAGGTTGGCGTTGAACACTTACTGAGGGATATTAAGGATACATCTCTTGGTTCCTTATCGCAAAGAATCGGTTGTCAGTTAGATGGATTATCCGGTTTATTACGACAGTTATATGAAATTCGTGAATACTTA CAGTTGGTTTCTTCTGACAAG CTTCCTGTTAACCATCGTATAATATACCAGTTGCAAGATATTTTCAATCTACTTCCTGATCTTAAACTGCATGATACAGTCCGTGCAATTCACGTCAATACTAATG ] [+] EMBL CD141208 [ GTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATATTAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGTAAGAAGGAAAGAAATTGATGGATTGCCTACTGAGGCTTATATCGCAGTTGAAGAAGTTCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCTGAAGAAGCTGAAGAGGTTGGCGTTGAACACTTACTGAGGGATATTAAGGATACATCTCTTGGTTCCTTATCGCAAAGAATCGGTTGTCAGNTAGATGGATTATCCGGTTTATTAC ] [+] EMBL CD117966 [ GGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCTGAAGAAGCTGAAGAGGTTGGCGTTGAACACTTACTGAGGGATATTAAGGACACATCTCTTGGTTCCTTATCGCAAAGAATCGGTTGGCAGTTAGATGGATTATTCGGGTTATTACCACCGGTATATGAAATTCGTGAATTCTTACCAG TGGGTTCTTTTGGCCAGCCTTCTGGTTAACCATCGTATAATATACCAGTTGCAAGATATTTTCAATCTACTTCCTGATCTTAAACTGCATGATACAGTCCGTGCAATTCACGTCAATACTAATGATCAAAGGCTGGTTATTAATGTGGCTGCTATAATGAGAGCAATACTCGCTTTACACGATCTAATTAGTAACAAATTAACGAATCGTGAAACTGAGAGAAATGAAGAAGGCTTAGGTGGTAATACAGAGTCGAAAAAAGTTCCTATTGGTCCTGTTGATCAAAGTAAGCGTACTACGCATAAATCTGATAACCTAGATA] consensusID : consensus_10868#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 902 fasta sequence [CNCATCAGTTAAAGTCGTCGTAGTAGTGGTAGTAGTAATATTACTACTATATCCAATAGTACTATTATTATTAGTAGTAGTAATAGGTGGAATTATTGAATTTGTTCCAGCTAAATTTTGTGTACCAATTGGTTGTAGACCACTAGCACTTATAGAATATGCTAAAATGCGTGATGAAGTACCAGCTGGTCTATTACGTGAACATAAAGCACGTGTTGAAAATGCAGTAAAATTAGGTCATCAAATTGATCCACAAAAATTTGGTTTAGATGAAGTTGGTGGTAATAATCAAGTAATAGAATCAGAAAAATTATGTAAATCATCATCTGTACAATCAATTACAACAACAGAGAAATTATCAGTAGTTGCCAATGAACAAATGTCAATTGATAATGAAACAACTAATCGTAAAGAAACTGTCCCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAAGTAAAGTCACTGAAAATCATGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACCGACGAACAACAACTGGATTCAACTCACGTAAATCAGACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTTGTTGGCAATGACAGTATTCAAACAAAATCATCTGATGAACAATTAAAAGATACAATTGAACAAGAACAACGCACTAAACCTGTTTTAGATTCTTCTACTTCACAACCACTGGAAAAATCAGCTAATGGACAAGTATCTGATGAAAAGTCAACAACTAACACTTCATCATTATCATCTTCATTACCACCGAATCCGAATAGTTTAGGTACAGCTGCAG] [-] EMBL CD153304 [CNCATCAGTTAAAGTCGTCGTAGTAGTGGTAGTAGTAATATTACTACTATATCCAATAGTACTATTATTATTAGTAGTAGTAATAGGTGGAATTATTGAATTTGTTCCAGCTAAATTTTGTGTACCAATTGGTTGTAGACCACTAGCACTTATAGAATATGCTAAAATGCGTGATGAAGTACCAGCTGGTCTATTACGTGAACATAAAGCACGTGTTGAAAATGCAGTAAAATTAGGTCATCAAATTGATCCACAAAAATTTGGTTTAGATGAAGTTGGTGGTAATAATCAAGTAATAGAATCAGAAAAATTATGTAAATCATCATCTGTACAATCAATTACAACAACAGAGAAATTATCAGTAGTTGCCAATGAACAAATGTCAATTGATAATGAAACAACTAATCGTAAAGAAACTGTCTCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAAGTAAAGTCACTGAAAATCGTGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACC ] [+] EMBL CD137703 [ ATCATCTGTACAATCAATTACAACAACAGAGAAATTATCAGTAGTTGCCAATGAACAAATGTCAATTGATAATGAAACAACTAATCGTAAAGAAACTGTCCCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAGGTAAAGTCACTGAAAATCATGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACCGACGAACAACAACTGGATTCAACTCACGTAAATCAGACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTTGTTGGCAATGACAGTATTCAAACAAAATCATCTGATGAACAATTAAAAGATACAATTGAACAAGAACAACGCACTAAACCTGTTTTAGATTCTTCTACTTCACAACCACTGGAAAAATCAGCTAATGGA ] [+] EMBL CD137686 [ ATCATCTGTACAATCAATTACAACAACAGAGAAATTATCAGTAGTTGCCAATGAACAAATGTCAATTGATAATGAAACAACTAATCGTAAAGAAACTGTCCCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAGGTAAAGTCACTGAAAATCATGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACCGACGAACAACAACTGGATTCAACTCACGTAAATCAGACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTTGTTGGCAATGACAGTATTCAAACAAAATCATCTGATGAACAATTAAAAGATACAATTGAACAAGAACAACGCACTAAACCTGTTTTAGATTCTTCTACTTCACAACCACTGGAAAAATCAGCTAATGGA ] [+] EMBL CD179602 [ GAAACAACTAATCGTAAAGAAACTGTCTCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAAGTAAAGTCACTGAAAATCGTGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACCGACGAACAACAACAGGATTCAACTCACGTAAATCAGACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTTGTTGGCAGTGACAGTATTCAAACAAAATCATCTGATGAACAATTAAAAGATACAATTGAACAAGAACAACGCACTAAACCTGTTTTAGATTCTTCTACTCCACAACCACTGGAAAAATCAGCTAATGAACAAGTATCTGATGAAAAGTCAACAACTAACACTTCATCATTATCATCTTCATTACCACCGAATCCGAATAGTTTAGGTACAGCTGCAG] [+] EMBL CD132031 [ ACAACTAATGGTGAAGAAACTGTCCCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAAGTAAAGTCACTGAAAATCATGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACCGACTAACAACAACAGGATTCAACTCACGTAAATCAAACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTTGTTGGCAATGACAGTATTCAAACAAAATCATCTGATGAAC ACTAAAAGATACAATTGAACAAGAACAACGCACTAAACCTGTTTTAGATTCTTt ] consensusID : consensus_10868#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CATATCGTAATTTTATGGTTGATACATATCGCTTAAATCCTCAGGAATATCTTACATTTACAGCTTGTCGAAGAAATCTCACTGGTGATGTTTGTTCAATTCTTAGAGTACATGCATTTCTAGAACAATGGGGTTTAATTAATTATCAAGTTACTGCACCATTAACAACAATAACAAATTCATCATCATCATCAAATGGAATGAATAATTTAAATGGTACTTCTACTACTACTATTTGTGCTACAACTACCACTACTACTACTGGTAATAATTCATCATCAGAAGCTGCTCGTCTTGCAGTAGCTGCAAGTTTAGGACCACCAAGTACTGCACATTTTCATATATTAGCTGATAGTGCTAGTGGTCTACAACCAATTGGTACACAAAATTTAGCTGGAACAAATTCAATAATTCCACCTATTACTACTACTAATAATAATAGTACTATTGATAATAGTAGTAATATTACTACTACCACTACTACGACGACTTTAACTGATGGAAATCAATTAGATCCGTATAAAATCCAGTCTAATAATGATGGTAATGGTAATGATACTACTACTACCTCAATCAGTAATAATATAACTAAACAAGAAT] [+] EMBL AI067255 [CATATCGTAATTTTATGGTTGATACATATCGCTTAAATCCTCAGGAATATCTTACATTTACAGCTTGTCGAAGAAATCTCACTGGTGATGTTTGTTCAATTCTTAGAGTACATGCATTTCTAGAACAATGGGGTTTAATTAATTATCAAGTTACTGCACCATTAACAACAATAACAAATTCATCATCATCATCAAATGGAATGAATAATTTAAATGGTACTTCTACTACTACTATTTGTGCTACAACTACCACTACTACTACTGGTAATAATTCATCATCAGAAGCTGCTCGTCTTGCAGTAGCTGCAAGTTTAGGACCACCAAGTACTGCACATTTTCATATATTAGCTGATAGTGCTAGTGGTCTACAACCAATTGGTACACAAAATTTAGCTGGAACAAATTCAATAATTCCACCTATTACTACTACTAATAATAATAGTACTATTGATAATAGTAGTAATATTACTACTACCACTACTACGACGACTTTAACTGATGGAAATCAATTAGATCCGTATAAAATCCAGTCTAATAATGATGGTAATGGTAATGATACTACTACTACCTCAATCAGTAATAATATAACTAAACAAGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10868#0 CGACTGACAATAAGCTTGCAACAGTACATGCATTCACTTCAGTAGATGGTGGTGTATGAT 60 consensus_10868#1 ------------------------------------------------------------ consensus_10868#3 ------------------------------------------------------------ consensus_10868#2 ------------------------------------------------------------ consensus_10868#0 GTTTGGTGATTCAAAAAATACCACTTCATTGACTGAGTCAATAGGTTGGGTAATTTTAGA 120 consensus_10868#1 ------------------------------------------------------------ consensus_10868#3 ------------------------------------------------------------ consensus_10868#2 ------------------------------------------------------------ consensus_10868#0 GCTTGTAGTAACAACCACCGAAGAAGGATCTGAATGAGTTACAACATTTTGTGGAAATGT 180 consensus_10868#1 ------------------------------------------------------------ consensus_10868#3 ------------------------------------------------------------ consensus_10868#2 ------------------------------------------------------------ consensus_10868#0 TACAGTGATATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTG 240 consensus_10868#1 ----GTGGTATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAATCTG 56 consensus_10868#3 ------------------------------------------------------------ consensus_10868#2 ------------------------------------------------------------ consensus_10868#0 TGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTG 300 consensus_10868#1 TGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTG 116 consensus_10868#3 ------------------------------------------------------------ consensus_10868#2 ------------------------------------------------------------ consensus_10868#0 TGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTG-TCGCTGTGGTC-ATCGGTGGT 358 consensus_10868#1 TGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGATCACTATAGTCGATCTGGAAA 176 consensus_10868#3 ------------------------------------------------------------ consensus_10868#2 ----------CNCATCAGTTAAAGTCGTCGTAGTAGTGGTAGTAGTAATATTACTACTAT 50 consensus_10868#0 TGT--------GCTTGAAACTCGTCGCGTGGATGATGTTGAATAAGTTGAGTAGGTGTCG 410 consensus_10868#1 AGTCACTAGTGGTCAGAAGAGAGTTGTAGGTGTTCTTTTGGGTTCACTAAATGGAAGCAT 236 consensus_10868#3 ------------------------------------------------------------ consensus_10868#2 ATCCAATAGTACTATTATTATTAGTAGTAGTAATAGGTGGAATTATTGAATTTGTTCCAG 110 consensus_10868#0 GAGAAATATGTCCACTAGATG-GTAGTTGTTGATTTGGAGAAGGCAAAGCAGACGGAGTT 469 consensus_10868#1 CTTGGATGTTAGCAACAGCTTTGCAGTTCCT--TTCGAAGAAGATACCACAGATCCAGAT 294 consensus_10868#3 ------------------------------------------------------------ consensus_10868#2 CTAAATTTTGTGTACCAATTG-GTTGTAGACCACTAGCACTTATAGAATATGCTAAAATG 169 consensus_10868#0 GTTGTTGTGATTGTTCCATAATTTGATGATGGATAAACT-GTTAGATTTGTAGAGG--AA 526 consensus_10868#1 GTT-TGGTTTCTCGACCACGATTATTTGGAAAGCATGTTTACTATGTTCAAAAAAGTTAA 353 consensus_10868#3 -----------------------------------------------------------C 1 consensus_10868#2 CGTGATGAAGTACCAGCTGGTCTATTACGTGAACATAAAGCACGTGTTGAAAATGCAGTA 229 consensus_10868#0 GAATTTAAAACTGATCTTGGGTCATTAGAAATTGG----CACAGTTTGTGCTG-CGTAAT 581 consensus_10868#1 CGCTCGAGAGAAGATTGTGGGTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATAT 413 consensus_10868#3 ATATCGTAATTTTATGGTTGATACATATCGCTTAAATCCTCAGGAATATCTTA---CATT 58 consensus_10868#2 AAATTAGGTCATCA-AATTGATCCACAAAAATTTGG---TTTAGATGAAGTTG--GTGGT 283 * * * * * * * * consensus_10868#0 TACTACCAGTCGGT-------GGAATA------ACATGGGGCCCTGGTTGTATTGGAGGA 628 consensus_10868#1 TAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGT 473 consensus_10868#3 TACAGCTTGTCGAA-------GAAATC-------------TCACTGGTGATGTTTGTTCA 98 consensus_10868#2 AATAATCAAGTAATAGAATCAGAAAAATTATGTAAAT-CATCATCTGTACAATCAATTAC 342 * * ** ** consensus_10868#0 TTAGAGTGTAGGACTGGATTCATTAC-TACTG----GACAAGAACC-----TTGAGTACT 678 consensus_10868#1 AAGAAGGAAAGAAATTGATGGATTGCCTACTGA---GGCTTATATCGCAGTTGAAGAAGT 530 consensus_10868#3 ATTCTTAGAGTACATGCATTTCTAGAACAATGG---GGTTTAATTAATTATCAAGTTACT 155 consensus_10868#2 AACAACAGAGAAATTATCAGTAGTTGCCAATGAACAAATGTCAATTGATAATGAAACAAC 402 * * ** * consensus_10868#0 AGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTG-TTGGGGTAAA--AC 735 consensus_10868#1 TCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAG--AT 588 consensus_10868#3 GCACCATTAACA----ACAATAACAAAT--TCATCATCATCATCAAATGGAATGAATAAT 209 consensus_10868#2 TAATCGTAAAGAAACTGTCCCAATGGAC-ACAATAATAACAGCTGTTTCCACTG----AC 457 * ** * * * consensus_10868#0 GACATTACTGCTTT-GTTGTTGTTGTTGA----TTATGATGATGCATTAAAGCTCTGGCA 790 consensus_10868#1 GCTGAAGAAGCTGAAGAGGTTGGCGTTGAACACTTACTGAGGGATATTAAGGATACATCT 648 consensus_10868#3 TTAAATGGTACTTCTACTACTACTATTTG-----TGCTACAAC-TACCACTACTACTACT 263 consensus_10868#2 GACACTATGAATGAAAGTAAAGTCACTGAA----AATCATGATAAAC--ATGATGATGTT 511 * * * * consensus_10868#0 C--GATTCTCCATTGTTTT-AATCACTTCCATATGAAATGC-TTGACGTTCTTGTAATAA 846 consensus_10868#1 CTTGGTTCCTTATCGCAAAGAATCGGTTGTCAGTTAGATGGATTATCCGGTTTATTACGA 708 consensus_10868#3 GGTAATAATTCATCATCAGAAGCTGCTCGTCT-TGCAGTAG--CTGCAAGTTTAGGACCA 320 consensus_10868#2 GATAATAATGTAACGACAA-AATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGA 570 * * * * * * * consensus_10868#0 TTGTTG-ACGCATTTGCTCAATCATTTCATATTCACGTTCCATGATAC-TTTCTAATTCC 904 consensus_10868#1 CAGTTATATGAAATTCGTGAATACTTACA-GTTGGTTTCTTCTGACAAGCTTCCTGTTAA 767 consensus_10868#3 C-------CAAGTACTGCACATTTTCATATATTAGCTGATAGTGCTAGTGGTCTACAACC 373 consensus_10868#2 TAG-----CAATAAAACTGAGCACGTGACAACCGACGAACAACAACTGGATTCAACTCAC 625 ** consensus_10868#0 --TGAATTTGTTTAAGTTTTATATCGAGTTTTTTCAACTGTGTTTCAACTAATTGAGCAA 962 consensus_10868#1 --CCATCGTATAATATACCAGTTGCAAGATATTTTCAATCTACTTCCTGATCTTAAACTG 825 consensus_10868#3 --AATTGGTACACAAAATTTAGCTGGAACAAATTCAATAATTCCACCTATTACTA--CTA 429 consensus_10868#2 GTAAATCAGACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTT 685 * consensus_10868#0 CT--AAACCTTTGATACGTTTTTCTTCAACACT---GGCTAAATGACGTGCTTTAATA-- 1015 consensus_10868#1 CATGATACAGTCCGTGCAATTCACGTCAATACTAATGATCAAAGGCTGGTTATTAATGTG 885 consensus_10868#3 CT-AATAATAATAGTACTATTGATAATAGTAGT---AATATTACTACTACCACTACTACG 485 consensus_10868#2 GTTGGCAATGACAGTATT-CAAACAAAATCATCTGATGAACAATTAAAAGATACAATTGA 744 * * * * * * * consensus_10868#0 GCTGCAGCAGCTAATGCA---CACGCTGCAGCTGTACCTAAACTATT-CGGATTCGGTGG 1071 consensus_10868#1 GCTGCTATAATGAGAGCAATACTCGCTTTACACG-ATCTAATTAGTAACAAATTAACGAA 944 consensus_10868#3 ACGACTTTAACTGATGGAA-------ATCAATTAGATCCGTATAAAATCCAGTCTAATAA 538 consensus_10868#2 ACAAGAACAACGCACTAAA--CCTGTTTTAGATTCTTCTACTTCACAACCACTGGAAAAA 802 * * * * * * * consensus_10868#0 TAATGAAGATGATAACGATGAAGTAGGAATATTCTGTTGTATTGTTGATTGTTTCAATAA 1131 consensus_10868#1 TCGTGAAACTGAGAGAAATGAAGAAGGC---TTAGGTGGTAATACAGA--GTCGAAAAAA 999 consensus_10868#3 TGATGGTAATGGTAATGATACTACTACTACCTCAATCAGTAATAATATAACTAAACAAGA 598 consensus_10868#2 TCA-GCTAATGGACAAGTATCTGATGAAAAGTCAACAACTAACACTTCATCATTATCATC 861 * * ** * ** consensus_10868#0 ATTCTCTGTAATTTTCTTAATTAGATTATTTGAAATGA---------------------- 1169 consensus_10868#1 GTTCCTATTGGTCCTGTTGATCAAAGTAAGCGTACTACGCATAAATCTGATAACCTAGAT 1059 consensus_10868#3 AT---------------------------------------------------------- 600 consensus_10868#2 TTCATTACCACCGAATCCGAATAGTTTAGGTACAGCTGCAG------------------- 902 * consensus_10868#0 - consensus_10868#1 A 1060 consensus_10868#3 - consensus_10868#2 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||