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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1169 fasta sequence
[CGACTGACAATAAGCTTGCAACAGTACATGCATTCACTTCAGTAGATGGTGGTGTATGATGTTTGG-TGA-TTCAAAAAATACCACTTCATTGACTGAGTCAATAGGTTGGGTAATTTTAGAGCTTGTAGTAACAACCACCGAAGAAGGATCTGAATGAGTTACAACATTTTGTGGAAATGTTACAGTGATATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGTCGCTGTGGTCATCGGTGGTTGTGCTTGAAACTCGTCGCGTGGATGATGTTGAATAAGTTGAGTAGGTGTCGGAGAAATATGTCCACTAGATGGTAGTTGTTGATTTGGAGAAGGCAAAGCAGACGGAGTTGTTGTTGTGATTGTTCCATAATTTGATGATGGATAAACTGTTAGATTTGTAGAGGAAGAATTTAAAACTGATCTTGGGTCATTAGAAATTGGCACAGTTTGTGCTGCGTAATTACTACCAGTCGGTGGAATAACATGGGGCCCTGGTTGTATTGGAGGATTAGAGTGTAGGACTGGATTCATTACTACTGGACAAGAACCTTGAGTACTAGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTGTTGGGGTAAAACGACATTACTGCTTTGTTGTTGTTGTTGATTATGATGATGCATTAAAGCTCTGGCACGATTCTCCATTGTTTTAATCACTTCCATATGAAATGCTTGACGTTCTTGTAATAATTGTTGACGCATTTGCTCAATCATTTCATATTCACGTTCCATGATACTTTCTAATTCCTGAATTTGTTTAAGTTTTATATCGAGTTTTTTCAACTGTGTTTCAACTAATTGAGCAACTAAACCTTTGATACGTTTTTCTTCAACACTGGCTAAATGACGTGCTTTAATAGCTGCAGCAGCTAATGCACACGCTGCAGCTGTACCTAAACTATTCGGATTCGGTGGTAATGAAGATGATAACGATGAAGTAGGAATATTCTGTTGTATTGTTGATTGTTTCAATAAATTCTCTGTAATTTTCTTAATTAGATTATTTGAAATGA]
[-] EMBL CD138378 [CGACTGACAATAAGCTTGCAACAGTACATGCATTCACTTCAGTAGATGGTGGTGTATGATGTCTGG TGATTTCAAAAAATACCACTTCATTGACTGAGTCAATAGGTTGGGTAATTTTAGAGCTTGTAGTAACAACCACCGAAGAAGGATCTGAATGAGTTACAACATTTTGTGGAAATGTTACAGTGATATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAGGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTT ]
[-] EMBL CD135480 [ TAAGCTTGCAACAGTACATGCATTCACTTCAGTAGATGGTGGTGTATGATGTTTGGTTGA TTCAAAAAATACCACTTCATTGACTGAGTCAATAGGTTGGGTAATTTTAGAGCTTGTAGTAACAACCACCGAAGAAGGATCTGAATGAGTTACAACATTTTGTGGAAATGTTACAGTGATATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAGGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGTCGCTGTGGTCATCGGTGGTTGTGCTTGCAACTCATCGCGTGGATGATGTTGAATAAGTTGAGTAGGTGTt ]
[+] EMBL CD093050 [ GCAACAGTACATGCATTCACTTCAGTAGATGGTGGTGTATGATGTTTGGTTGA TTCAAAAAATACCACTTCATTGACTGAATCAATAGGTTGGGTAATTTTAGAGCTTGTAGTAACAACCACCGAAGAAGGATCTGAATGAGTTACAACATTTTGTGGAAATGTTACAGTGATATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTACACGTTGGCTGTGTTGGTGTTGATGTCACT ]
[-] EMBL CD154351 [ TATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGTCGCTGTGGTCATCGGTGGTTGTGCTTGAAACTCGTCGCGTGGATGATGTTGAATAAGTTGAGTAGGTGT ]
[-] EMBL SMT14523 [ gnTCTGATGTAATAGGATAGACAGANTCTGACCNAGAATNACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGTCGCTGTGGTCATCGGTGGTTGTGCTTGAAACTCGTNGC ]
[-] EMBL CD114605 [ AGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGTCGCTGTGGTCATCGGTGGTTGTGCTTGAAACTCGTCGCGTGGATGATGTTGAATAAGTTGAGTAGGTGTCGGAGAAATATGTCCACTAGATGGTAGTTGTTGATTTGGAGAAGGCAAAGCAGACGGAGTTGTTGTTGTGATTGTTCCATAATTTGATGATGGATAAACTGTTAGATTTGTAGAGGAAGAATTTAAAACTGATCTTGGGTCATTAGAAATTGGCACAGTTTGTGCTG ]
[+] EMBL CD187430 [ GTGGTTGTGCTTGAAACTCGTCGCGTGGAT ATGTTGAATAAGTTGAGTAGGTGTCGGAGAAATATGTCCACTAGATGGTAGTTGTTGATTTGGAGAAGGCAAAGCAGACGGAGTTGTTGTTGTGATTGTTCCATAATTTGATGATGGATAAACTGTTAGATTTGTAGAGGAAGAATTTAAAACTGATCTTGGGTCATTAGAAATTGGCACAGTTTGTGCTGCGTAATTACTACCAGTCGGTGGAATAACATGGGGCCCTGGTTGTATTGGAGGATTAGAGTGTAGGACTGGATTCATTACTACTGGACAAGAACCTTGAGTACTAGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTGTTGGGGTAAAACGACATTACTGCTTTGTTGTTGTTGTTGATTATGATGATGCATTAAAGCTCTGGCACGATTCT ]
[+] EMBL CD138780 [ TGATTGTTCCATAATTTGATGATGGATAAACTGTTAGATTTGTAGAGGAAGAATTTAAAACTGATCTTGGGTCATTAGAAATTGGCACGGTTTGTGCTGCGTAATTACTACCAGTCGGTGGAATAACATGGGGCCCTGGTTGTATTGGAGGATTAGAGTGTAGGACTGGATTCATTACTACCGGACAAGAACCTTGAGTACTAGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTGTTGGGGTAAAACGACATTACTGCTTTGTTGTTGTTGTTGATTATGATGA ]
[-] EMBL CD138778 [ GATTGTTCCATAATTTGATGATGGATAAACTGTTAGATTTGTAGAGGAAGAATTTAAAACTGATCTTGGGTCATTAGAAATTGGCACGGTTTGTGCTGCGTAATTACTACCAGTCGGTGGAATAACATGGGGCCCTGGTTGTATTGGAGGATTAGAGTGTAGGACTGGATTCATTACTACTGGACAAGAACCTTGAGTACTAGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTGTTGGGGTAAAACGACATTACTGCTTTGTTGTTGTTGTTGATTATGATGAT ]
[-] EMBL CD155375 [ gtTGGAATAACATGGGGCCCTGGTTGTATTGGAGGATTAGAGTGTAGGACTGGATTCATTACTACTGGACAAGAACCTTGAGTACTAGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTGTTGGGGTAAAACGACATTACTGCTTTGTTGTTGTTGTTGATTATGATGATGCATTAAAGCTCTGGCACGATTCTCCATTGTTTTAATCACTTCCATATGAAATGCTTGACGTTCTTGTAATAATTGTTGACGCATTTGCTCAATCATTTCATATTCACGTTCCATGATACTTTCTAATTCCTGAATTTGTTTAAGTTTTATATCGAGTTTTTTCAACTGTGTTTCAACTAATTGAGCAACTAAACCTTTGATACGTTTTTCTTCAACACTGGCTAAATGACGTGCTTTAATAGCTGCAGCAGCTAATGCACACGCTGCAGCTGTACCTAAACTATTCG ]
[+] EMBL CD192382 [ TTGTTGTTGTTGATTATGATGATGCATTAAAGCTCTGGCACGATTCTCCATTGTTTTAATCACTTCCATATGAAATGCTTGACGTTCTTGTAATAATTGTTGACGCATTTGCTCAATCATTTCATATTCACGTTCCATGATACTTTCTAATTCCTGAATTTGTTTAAGTTTTATATCGAGTTTTTTCAACTGTGTTTCAACTAATTGAGCAACTAAACCTTTGATACGTTTTTCTTCAACACTGGCTAAATGACGTGCTTTAATAGCTGCAGCAGCTAATGCACACGCTGCAGCTGTACCTAAACTATTCGGATTCGGTGGTAATGAAGATGATAACGATGAAGTAGGAATATTCTGTTGTATTGTTGATTGTTTCAATAAATTCTCTGTAATTTTCTTAATTAGATTATTTGAAATGA]
consensusID : consensus_10868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1060 fasta sequence
[GTGGTATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAATCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGATCACTATAGTCGATCTGGAAAAGTCACTAGTGGTCAGAAGAGAGTTGTAGGTGTTCTTTTGGGTTCACTAAATGGAAGCATCTTGGATGTTAGCAACAGCTTTGCAGTTCCTTTCGAAGAAGATACCACAGATCCAGATGTTTGGTTTCTCGACCACGATTATTTGGAAAGCATGTTTACTATGTTCAAAAAAGTTAACGCTCGAGAGAAGATTGTGGGTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATATTAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGTAAGAAGGAAAGAAATTGATGGATTGCCTACTGAGGCTTATATCGCAGTTGAAGAAGTTCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCTGAAGAAGCTGAAGAGGTTGGCGTTGAACACTTACTGAGGGATATTAAGGATACATCTCTTGGTTCCTTATCGCAAAGAATCGGTTGTCAGTTAGATGGATTATCCGGTTTATTACGACAGTTATATGAAATTCGTGAATACTTA-CAGTTGGTTTCTTCTGACAAG-CTTCCTGTTAACCATCGTATAATATACCAGTTGCAAGATATTTTCAATCTACTTCCTGATCTTAAACTGCATGATACAGTCCGTGCAATTCACGTCAATACTAATGATCAAAGGCTGGTTATTAATGTGGCTGCTATAATGAGAGCAATACTCGCTTTACACGATCTAATTAGTAACAAATTAACGAATCGTGAAACTGAGAGAAATGAAGAAGGCTTAGGTGGTAATACAGAGTCGAAAAAAGTTCCTATTGGTCCTGTTGATCAAAGTAAGCGTACTACGCATAAATCTGATAACCTAGATA]
[+] EMBL CD114530 [GTGGTATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAATCTGTGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTGTGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGATCACTATAGTCGATCTGGAAAAGTCACTAGTGGTCAGAAGAGAGTTGTAGGTGTTCTTTTGGGTTCACTAAATGGAAGCATCTTGGATGTTAGCAACAGCTTTGCAGTTCCTTTCGAAGAAGATACCACAGATCCAGATGTTTGGTTTCTCGACCACGATTATTTGGAAAGCATGTTTACTATGTTCAAAAAAGTTAACGCTCGAGAGAAGAT ]
[-] EMBL CD156466 [ GATCTGGAAAAGTCACTAGTGGTCAGAAGAGAGTTGTAGGTGTTCTTTTGGGTTCACTAAATGGAAGCATCTTGGATGTTAGCAACAGCTTTGCAGTTCCTTTCGAAGAAGATACCACAGATCCAGATGTTTGGTTTCTCGACCACGATTATTTGGAAAGCATGTTTACTATGTTCAAAAAAGTTAACGCTCGAGAGAAGATTGTGGGTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATATTAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGTAAGAAGGAAAGAAATTGATGGATTGCCTACTGAGGCTTATATCGCAGTTGAAGAAGTTCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCT ]
[-] EMBL CD156392 [ tCAGCAGTTCAGTACCCTGTGAACAAGATACCACAGATCCAGATGTTTGGTTTCTCGACCACGATTATTTGGAAAGCATGTTTACTATGTTCAAAAAAGTTAACGCTCGAGAGAAGATTGTGGGTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATATTAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGTAAGAAGGAAAGAAATTGATGGATTGCCTACTGAGGCTTATATCGCAGTTGAAGAAGTTCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCT ]
[+] EMBL CD083446 [ atcggcACGAGGATTATTTGGAAAGCATGTTTACTATG TCAAAAAAGTTAACGCTCGAGAGAAGATTGTGGGTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATATTAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGTAAGAAGGAAAGAAATTGATGGATTGCCTACTGAGGCTTATATCGCAGTTGAAGAAGTTCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCTGAAGAAGCTGAAGAGGTTGGCGTTGAACACTTACTGAGGGATATTAAGGATACATCTCTTGGTTCCTTATCGCAAAGAATCGGTTGTCAGTTAGATGGATTATCCGGTTTATTACGACAGTTATATGAAATTCGTGAATACTTA CAGTTGGTTTCTTCTGACAAG CTTCCTGTTAACCATCGTATAATATACCAGTTGCAAGATATTTTCAATCTACTTCCTGATCTTAAACTGCATGATACAGTCCGTGCAATTCACGTCAATACTAATG ]
[+] EMBL CD141208 [ GTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATATTAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGTAAGAAGGAAAGAAATTGATGGATTGCCTACTGAGGCTTATATCGCAGTTGAAGAAGTTCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCTGAAGAAGCTGAAGAGGTTGGCGTTGAACACTTACTGAGGGATATTAAGGATACATCTCTTGGTTCCTTATCGCAAAGAATCGGTTGTCAGNTAGATGGATTATCCGGTTTATTAC ]
[+] EMBL CD117966 [ GGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAGATGCTGAAGAAGCTGAAGAGGTTGGCGTTGAACACTTACTGAGGGATATTAAGGACACATCTCTTGGTTCCTTATCGCAAAGAATCGGTTGGCAGTTAGATGGATTATTCGGGTTATTACCACCGGTATATGAAATTCGTGAATTCTTACCAG TGGGTTCTTTTGGCCAGCCTTCTGGTTAACCATCGTATAATATACCAGTTGCAAGATATTTTCAATCTACTTCCTGATCTTAAACTGCATGATACAGTCCGTGCAATTCACGTCAATACTAATGATCAAAGGCTGGTTATTAATGTGGCTGCTATAATGAGAGCAATACTCGCTTTACACGATCTAATTAGTAACAAATTAACGAATCGTGAAACTGAGAGAAATGAAGAAGGCTTAGGTGGTAATACAGAGTCGAAAAAAGTTCCTATTGGTCCTGTTGATCAAAGTAAGCGTACTACGCATAAATCTGATAACCTAGATA]
consensusID : consensus_10868#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 902 fasta sequence
[CNCATCAGTTAAAGTCGTCGTAGTAGTGGTAGTAGTAATATTACTACTATATCCAATAGTACTATTATTATTAGTAGTAGTAATAGGTGGAATTATTGAATTTGTTCCAGCTAAATTTTGTGTACCAATTGGTTGTAGACCACTAGCACTTATAGAATATGCTAAAATGCGTGATGAAGTACCAGCTGGTCTATTACGTGAACATAAAGCACGTGTTGAAAATGCAGTAAAATTAGGTCATCAAATTGATCCACAAAAATTTGGTTTAGATGAAGTTGGTGGTAATAATCAAGTAATAGAATCAGAAAAATTATGTAAATCATCATCTGTACAATCAATTACAACAACAGAGAAATTATCAGTAGTTGCCAATGAACAAATGTCAATTGATAATGAAACAACTAATCGTAAAGAAACTGTCCCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAAGTAAAGTCACTGAAAATCATGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACCGACGAACAACAACTGGATTCAACTCACGTAAATCAGACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTTGTTGGCAATGACAGTATTCAAACAAAATCATCTGATGAACAATTAAAAGATACAATTGAACAAGAACAACGCACTAAACCTGTTTTAGATTCTTCTACTTCACAACCACTGGAAAAATCAGCTAATGGACAAGTATCTGATGAAAAGTCAACAACTAACACTTCATCATTATCATCTTCATTACCACCGAATCCGAATAGTTTAGGTACAGCTGCAG]
[-] EMBL CD153304 [CNCATCAGTTAAAGTCGTCGTAGTAGTGGTAGTAGTAATATTACTACTATATCCAATAGTACTATTATTATTAGTAGTAGTAATAGGTGGAATTATTGAATTTGTTCCAGCTAAATTTTGTGTACCAATTGGTTGTAGACCACTAGCACTTATAGAATATGCTAAAATGCGTGATGAAGTACCAGCTGGTCTATTACGTGAACATAAAGCACGTGTTGAAAATGCAGTAAAATTAGGTCATCAAATTGATCCACAAAAATTTGGTTTAGATGAAGTTGGTGGTAATAATCAAGTAATAGAATCAGAAAAATTATGTAAATCATCATCTGTACAATCAATTACAACAACAGAGAAATTATCAGTAGTTGCCAATGAACAAATGTCAATTGATAATGAAACAACTAATCGTAAAGAAACTGTCTCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAAGTAAAGTCACTGAAAATCGTGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACC ]
[+] EMBL CD137703 [ ATCATCTGTACAATCAATTACAACAACAGAGAAATTATCAGTAGTTGCCAATGAACAAATGTCAATTGATAATGAAACAACTAATCGTAAAGAAACTGTCCCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAGGTAAAGTCACTGAAAATCATGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACCGACGAACAACAACTGGATTCAACTCACGTAAATCAGACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTTGTTGGCAATGACAGTATTCAAACAAAATCATCTGATGAACAATTAAAAGATACAATTGAACAAGAACAACGCACTAAACCTGTTTTAGATTCTTCTACTTCACAACCACTGGAAAAATCAGCTAATGGA ]
[+] EMBL CD137686 [ ATCATCTGTACAATCAATTACAACAACAGAGAAATTATCAGTAGTTGCCAATGAACAAATGTCAATTGATAATGAAACAACTAATCGTAAAGAAACTGTCCCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAGGTAAAGTCACTGAAAATCATGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACCGACGAACAACAACTGGATTCAACTCACGTAAATCAGACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTTGTTGGCAATGACAGTATTCAAACAAAATCATCTGATGAACAATTAAAAGATACAATTGAACAAGAACAACGCACTAAACCTGTTTTAGATTCTTCTACTTCACAACCACTGGAAAAATCAGCTAATGGA ]
[+] EMBL CD179602 [ GAAACAACTAATCGTAAAGAAACTGTCTCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAAGTAAAGTCACTGAAAATCGTGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACCGACGAACAACAACAGGATTCAACTCACGTAAATCAGACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTTGTTGGCAGTGACAGTATTCAAACAAAATCATCTGATGAACAATTAAAAGATACAATTGAACAAGAACAACGCACTAAACCTGTTTTAGATTCTTCTACTCCACAACCACTGGAAAAATCAGCTAATGAACAAGTATCTGATGAAAAGTCAACAACTAACACTTCATCATTATCATCTTCATTACCACCGAATCCGAATAGTTTAGGTACAGCTGCAG]
[+] EMBL CD132031 [ ACAACTAATGGTGAAGAAACTGTCCCAATGGACACAATAATAACAGCTGTTTCCACTGACGACACTATGAATGAAAGTAAAGTCACTGAAAATCATGATAAACATGATGATGTTGATAATAATGTAACGACAAAATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGATAGCAATAAAACTGAGCACGTGACAACCGACTAACAACAACAGGATTCAACTCACGTAAATCAAACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTTGTTGGCAATGACAGTATTCAAACAAAATCATCTGATGAAC ACTAAAAGATACAATTGAACAAGAACAACGCACTAAACCTGTTTTAGATTCTTt ]
consensusID : consensus_10868#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CATATCGTAATTTTATGGTTGATACATATCGCTTAAATCCTCAGGAATATCTTACATTTACAGCTTGTCGAAGAAATCTCACTGGTGATGTTTGTTCAATTCTTAGAGTACATGCATTTCTAGAACAATGGGGTTTAATTAATTATCAAGTTACTGCACCATTAACAACAATAACAAATTCATCATCATCATCAAATGGAATGAATAATTTAAATGGTACTTCTACTACTACTATTTGTGCTACAACTACCACTACTACTACTGGTAATAATTCATCATCAGAAGCTGCTCGTCTTGCAGTAGCTGCAAGTTTAGGACCACCAAGTACTGCACATTTTCATATATTAGCTGATAGTGCTAGTGGTCTACAACCAATTGGTACACAAAATTTAGCTGGAACAAATTCAATAATTCCACCTATTACTACTACTAATAATAATAGTACTATTGATAATAGTAGTAATATTACTACTACCACTACTACGACGACTTTAACTGATGGAAATCAATTAGATCCGTATAAAATCCAGTCTAATAATGATGGTAATGGTAATGATACTACTACTACCTCAATCAGTAATAATATAACTAAACAAGAAT]
[+] EMBL AI067255 [CATATCGTAATTTTATGGTTGATACATATCGCTTAAATCCTCAGGAATATCTTACATTTACAGCTTGTCGAAGAAATCTCACTGGTGATGTTTGTTCAATTCTTAGAGTACATGCATTTCTAGAACAATGGGGTTTAATTAATTATCAAGTTACTGCACCATTAACAACAATAACAAATTCATCATCATCATCAAATGGAATGAATAATTTAAATGGTACTTCTACTACTACTATTTGTGCTACAACTACCACTACTACTACTGGTAATAATTCATCATCAGAAGCTGCTCGTCTTGCAGTAGCTGCAAGTTTAGGACCACCAAGTACTGCACATTTTCATATATTAGCTGATAGTGCTAGTGGTCTACAACCAATTGGTACACAAAATTTAGCTGGAACAAATTCAATAATTCCACCTATTACTACTACTAATAATAATAGTACTATTGATAATAGTAGTAATATTACTACTACCACTACTACGACGACTTTAACTGATGGAAATCAATTAGATCCGTATAAAATCCAGTCTAATAATGATGGTAATGGTAATGATACTACTACTACCTCAATCAGTAATAATATAACTAAACAAGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10868#0 CGACTGACAATAAGCTTGCAACAGTACATGCATTCACTTCAGTAGATGGTGGTGTATGAT 60
consensus_10868#1 ------------------------------------------------------------
consensus_10868#3 ------------------------------------------------------------
consensus_10868#2 ------------------------------------------------------------
consensus_10868#0 GTTTGGTGATTCAAAAAATACCACTTCATTGACTGAGTCAATAGGTTGGGTAATTTTAGA 120
consensus_10868#1 ------------------------------------------------------------
consensus_10868#3 ------------------------------------------------------------
consensus_10868#2 ------------------------------------------------------------
consensus_10868#0 GCTTGTAGTAACAACCACCGAAGAAGGATCTGAATGAGTTACAACATTTTGTGGAAATGT 180
consensus_10868#1 ------------------------------------------------------------
consensus_10868#3 ------------------------------------------------------------
consensus_10868#2 ------------------------------------------------------------
consensus_10868#0 TACAGTGATATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAGTCTG 240
consensus_10868#1 ----GTGGTATTAGGTACAGGCGCATCATTCGATGGTTCAATAATTTGACGAACAATCTG 56
consensus_10868#3 ------------------------------------------------------------
consensus_10868#2 ------------------------------------------------------------
consensus_10868#0 TGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTG 300
consensus_10868#1 TGGTTCTGATGTAATAGGATAGACAGATTCTGACCAAGAATCACAAGTTGTTTCTGTTTG 116
consensus_10868#3 ------------------------------------------------------------
consensus_10868#2 ------------------------------------------------------------
consensus_10868#0 TGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTG-TCGCTGTGGTC-ATCGGTGGT 358
consensus_10868#1 TGGTAGTGTATTAGACGTTGGCTGTGTTGGTGTTGTTGATCACTATAGTCGATCTGGAAA 176
consensus_10868#3 ------------------------------------------------------------
consensus_10868#2 ----------CNCATCAGTTAAAGTCGTCGTAGTAGTGGTAGTAGTAATATTACTACTAT 50
consensus_10868#0 TGT--------GCTTGAAACTCGTCGCGTGGATGATGTTGAATAAGTTGAGTAGGTGTCG 410
consensus_10868#1 AGTCACTAGTGGTCAGAAGAGAGTTGTAGGTGTTCTTTTGGGTTCACTAAATGGAAGCAT 236
consensus_10868#3 ------------------------------------------------------------
consensus_10868#2 ATCCAATAGTACTATTATTATTAGTAGTAGTAATAGGTGGAATTATTGAATTTGTTCCAG 110
consensus_10868#0 GAGAAATATGTCCACTAGATG-GTAGTTGTTGATTTGGAGAAGGCAAAGCAGACGGAGTT 469
consensus_10868#1 CTTGGATGTTAGCAACAGCTTTGCAGTTCCT--TTCGAAGAAGATACCACAGATCCAGAT 294
consensus_10868#3 ------------------------------------------------------------
consensus_10868#2 CTAAATTTTGTGTACCAATTG-GTTGTAGACCACTAGCACTTATAGAATATGCTAAAATG 169
consensus_10868#0 GTTGTTGTGATTGTTCCATAATTTGATGATGGATAAACT-GTTAGATTTGTAGAGG--AA 526
consensus_10868#1 GTT-TGGTTTCTCGACCACGATTATTTGGAAAGCATGTTTACTATGTTCAAAAAAGTTAA 353
consensus_10868#3 -----------------------------------------------------------C 1
consensus_10868#2 CGTGATGAAGTACCAGCTGGTCTATTACGTGAACATAAAGCACGTGTTGAAAATGCAGTA 229
consensus_10868#0 GAATTTAAAACTGATCTTGGGTCATTAGAAATTGG----CACAGTTTGTGCTG-CGTAAT 581
consensus_10868#1 CGCTCGAGAGAAGATTGTGGGTTGGTATCACTCTGGTCCTAAGCTTTGTACGAACGATAT 413
consensus_10868#3 ATATCGTAATTTTATGGTTGATACATATCGCTTAAATCCTCAGGAATATCTTA---CATT 58
consensus_10868#2 AAATTAGGTCATCA-AATTGATCCACAAAAATTTGG---TTTAGATGAAGTTG--GTGGT 283
* * * * * * * *
consensus_10868#0 TACTACCAGTCGGT-------GGAATA------ACATGGGGCCCTGGTTGTATTGGAGGA 628
consensus_10868#1 TAAAATTAACGAACTTTTCCGGAAATATGCTCCAAACTCAGTGCTGGTAGTTGTTGATGT 473
consensus_10868#3 TACAGCTTGTCGAA-------GAAATC-------------TCACTGGTGATGTTTGTTCA 98
consensus_10868#2 AATAATCAAGTAATAGAATCAGAAAAATTATGTAAAT-CATCATCTGTACAATCAATTAC 342
* * ** **
consensus_10868#0 TTAGAGTGTAGGACTGGATTCATTAC-TACTG----GACAAGAACC-----TTGAGTACT 678
consensus_10868#1 AAGAAGGAAAGAAATTGATGGATTGCCTACTGA---GGCTTATATCGCAGTTGAAGAAGT 530
consensus_10868#3 ATTCTTAGAGTACATGCATTTCTAGAACAATGG---GGTTTAATTAATTATCAAGTTACT 155
consensus_10868#2 AACAACAGAGAAATTATCAGTAGTTGCCAATGAACAAATGTCAATTGATAATGAAACAAC 402
* * ** *
consensus_10868#0 AGAAAAGGTAGGTTGTAAAGGAATTTGTGACTGTGGTTGTTGTTG-TTGGGGTAAA--AC 735
consensus_10868#1 TCACGATGATGGATCTCCAACAACGAAATCTTTTGATCATCTTCGATCGGAAGTAG--AT 588
consensus_10868#3 GCACCATTAACA----ACAATAACAAAT--TCATCATCATCATCAAATGGAATGAATAAT 209
consensus_10868#2 TAATCGTAAAGAAACTGTCCCAATGGAC-ACAATAATAACAGCTGTTTCCACTG----AC 457
* ** * * *
consensus_10868#0 GACATTACTGCTTT-GTTGTTGTTGTTGA----TTATGATGATGCATTAAAGCTCTGGCA 790
consensus_10868#1 GCTGAAGAAGCTGAAGAGGTTGGCGTTGAACACTTACTGAGGGATATTAAGGATACATCT 648
consensus_10868#3 TTAAATGGTACTTCTACTACTACTATTTG-----TGCTACAAC-TACCACTACTACTACT 263
consensus_10868#2 GACACTATGAATGAAAGTAAAGTCACTGAA----AATCATGATAAAC--ATGATGATGTT 511
* * * *
consensus_10868#0 C--GATTCTCCATTGTTTT-AATCACTTCCATATGAAATGC-TTGACGTTCTTGTAATAA 846
consensus_10868#1 CTTGGTTCCTTATCGCAAAGAATCGGTTGTCAGTTAGATGGATTATCCGGTTTATTACGA 708
consensus_10868#3 GGTAATAATTCATCATCAGAAGCTGCTCGTCT-TGCAGTAG--CTGCAAGTTTAGGACCA 320
consensus_10868#2 GATAATAATGTAACGACAA-AATTAGAAAAATATAAAATGGAAGAAAATGTTGAAAGTGA 570
* * * * * * *
consensus_10868#0 TTGTTG-ACGCATTTGCTCAATCATTTCATATTCACGTTCCATGATAC-TTTCTAATTCC 904
consensus_10868#1 CAGTTATATGAAATTCGTGAATACTTACA-GTTGGTTTCTTCTGACAAGCTTCCTGTTAA 767
consensus_10868#3 C-------CAAGTACTGCACATTTTCATATATTAGCTGATAGTGCTAGTGGTCTACAACC 373
consensus_10868#2 TAG-----CAATAAAACTGAGCACGTGACAACCGACGAACAACAACTGGATTCAACTCAC 625
**
consensus_10868#0 --TGAATTTGTTTAAGTTTTATATCGAGTTTTTTCAACTGTGTTTCAACTAATTGAGCAA 962
consensus_10868#1 --CCATCGTATAATATACCAGTTGCAAGATATTTTCAATCTACTTCCTGATCTTAAACTG 825
consensus_10868#3 --AATTGGTACACAAAATTTAGCTGGAACAAATTCAATAATTCCACCTATTACTA--CTA 429
consensus_10868#2 GTAAATCAGACACTGACTACAGTAGTGAATGAGACTGCTGCCGCTGCTGCTGCTGAAGTT 685
*
consensus_10868#0 CT--AAACCTTTGATACGTTTTTCTTCAACACT---GGCTAAATGACGTGCTTTAATA-- 1015
consensus_10868#1 CATGATACAGTCCGTGCAATTCACGTCAATACTAATGATCAAAGGCTGGTTATTAATGTG 885
consensus_10868#3 CT-AATAATAATAGTACTATTGATAATAGTAGT---AATATTACTACTACCACTACTACG 485
consensus_10868#2 GTTGGCAATGACAGTATT-CAAACAAAATCATCTGATGAACAATTAAAAGATACAATTGA 744
* * * * * * *
consensus_10868#0 GCTGCAGCAGCTAATGCA---CACGCTGCAGCTGTACCTAAACTATT-CGGATTCGGTGG 1071
consensus_10868#1 GCTGCTATAATGAGAGCAATACTCGCTTTACACG-ATCTAATTAGTAACAAATTAACGAA 944
consensus_10868#3 ACGACTTTAACTGATGGAA-------ATCAATTAGATCCGTATAAAATCCAGTCTAATAA 538
consensus_10868#2 ACAAGAACAACGCACTAAA--CCTGTTTTAGATTCTTCTACTTCACAACCACTGGAAAAA 802
* * * * * * *
consensus_10868#0 TAATGAAGATGATAACGATGAAGTAGGAATATTCTGTTGTATTGTTGATTGTTTCAATAA 1131
consensus_10868#1 TCGTGAAACTGAGAGAAATGAAGAAGGC---TTAGGTGGTAATACAGA--GTCGAAAAAA 999
consensus_10868#3 TGATGGTAATGGTAATGATACTACTACTACCTCAATCAGTAATAATATAACTAAACAAGA 598
consensus_10868#2 TCA-GCTAATGGACAAGTATCTGATGAAAAGTCAACAACTAACACTTCATCATTATCATC 861
* * ** * **
consensus_10868#0 ATTCTCTGTAATTTTCTTAATTAGATTATTTGAAATGA---------------------- 1169
consensus_10868#1 GTTCCTATTGGTCCTGTTGATCAAAGTAAGCGTACTACGCATAAATCTGATAACCTAGAT 1059
consensus_10868#3 AT---------------------------------------------------------- 600
consensus_10868#2 TTCATTACCACCGAATCCGAATAGTTTAGGTACAGCTGCAG------------------- 902
*
consensus_10868#0 -
consensus_10868#1 A 1060
consensus_10868#3 -
consensus_10868#2 -
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||