These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1695 fasta sequence [GCAAAGTTGGATCCACCTTTCGTGTGCTGTAATACCTAGCAGTCAAAATACATCAATGGCATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCTAATATTCTTTATGTGTGGTGTGGGAGGGCTCTTACCATGGAACTTCTTCATTAATGCACAACGGTATTTTGATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTG-TCCTTAA-CTGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGCAGCCATACTTCCTTCCAAACATATGAAGGCTGCTTTAGAAGGGCAGGCTGTGTCTGGTATTATTGCATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC-AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCA-CAAGGATTATAATCAATTGTAC-GC-GCGTTTG----TTAGT--GACTTAATTTTATCGATGCATCCATCACAAAACAGTTGAAGAACAAACAATTGACCTTTTTTGGCCACATATTTTCATTATTTATTTATTTGTAAAAGAATTGAACAATTACAGTGTTTAAATTCAATACATTCTATGGATGTACAGATGGTAAAATTGAACAAGTACTATTCTCCATGACTGTTGAAGGTGATTCTGAGTTTGTTGTATGTTCACTATCTTCCTTGGGATACGATGGTTGTAATTNTGATCGGAAAAAAT-AAATATATGATGTAATAC] [-] EMBL CD183428 [GCAAAGTTGGATCCACCTTTCGTGTGCTGTTATACCTAGCAGTCTCAATACATCAATGGCATCTGCAATAAGAGATGAAAAGGGGTTCCCCCCCGCTGATAGATATAATTTGGTGTATCTAATAGTCTTTATGTGTGGTGTGGGAAGGCTCTTACCATGGTACTTCTTCATTAACGCACAACGGTATTTTGATTACAAAATGAGAGATAGGTCTCTCCCTTCAGATGCTGATTACACAGACCCTAAATATATGCCCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTT ] [+] EMBL CD178863 [ AAAGTTGGATCCACCTTTCGTGTGCTGTAATACCTAGCAGTCAAAATACATCAATGGCATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCTAATATTCTTTATGTGTGGTGTGGGAGGGCTCTTACCATGGAACTTCTTCATTAATGCACAACGGTATTTTGATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTTGCCATGACGCTTATTTCGGGCGTG TCCTTAA CTGTGGTAGTGCTCTTGCTC AGGTAGCGTATTTGGTGaac ] [+] EMBL CD166288 [ AAATTTGGATCCACCTTTCGCGTGCTGTAATACCTAGCAGTCAAAATACATCAATGGCATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCTAATATTCTTTATGTGTGGTGTGGGAAGGCTCTTACCATGGAACTTCTTCATTAATGCACAACGGTATTTTGATTACAAAATGAGAGGTAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCCGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATG ] [+] EMBL CD178536 [ AAAGTTGGATCCACCTTTCGTGTGCTGTAATACCTAGCAGTCAAAATACATCAATGGCATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCTAATATTCTTTATGTGTGGTGTGGGAGGGCTCTTACCATGGAACTTCTTCATTAATGCACAACGGTATTTTGATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTGTTCCTTAA CTGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGC ] [-] EMBL CD063812 [ TGGCATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCTAATACTCTTTATGTGTGGTGTGGGAGGGCTCTTACCATGGAACTTCTTCATTAATGCACAACGGTATTTTGATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGAT ] [-] EMBL CD189027 [ TATTTCGGTCGTG TCCTTAANCTGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGCAGCCATACTTCCTTCCAAACATATGAAGGCTGCTTTAGAAGGGCAGGCTGTGTCTGGTATTATTGCATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAA ] [+] EMBL CD187794 [ ATCTCTGGCCGACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGCGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAAT ] [+] EMBL CD187820 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTT AATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAGAGATGATAATAACGAA ] [+] EMBL CD187801 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAA ] [+] EMBL CD187774 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTCTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTANCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTCTTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACAT ] [+] EMBL CD187688 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAATATTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATTCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGGACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTTCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTT ] [+] EMBL CD187815 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAGAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTAT ] [+] EMBL CD187811 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCAT ACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTA TTTAAATATTACTGGGACAAAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCGAG ] [-] EMBL CD186892 [ TATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTG ] [+] EMBL CD184309 [ CCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTCTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCA ] [+] EMBL CD184321 [ CCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTCTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCA ] [-] EMBL CD097380 [ AGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAGCATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGGCAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAG ] [+] EMBL CD082931 [ aggGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCA CAAGGATTATAATCAATTGTAG GCTTCATTTGTCTTTTCTTCAGACTTAATTNTATCGATGCATCCATCACAAA ] [-] EMBL CD194042 [ atacgGCATAAATAAGAGTGG ATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTA ] [+] EMBL CD079768 [ gcTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCA CAAGGATTATAATCAATTGTAC GC GCGTTTG TTAGT GACTTAATTTTATCGATGCATCCATCACAAAACAGTTGAAGAACAAACAATTGACCTTTTTTGGCCACATATTTTCATTATTTATTTATTTGTAAAAGAATTGAACAATTACAGTGTTTAAATTCAATACATTCTATGGATGTACAGATGGTAAAATTGAACAAGTACTATTCTCCATGACTGTTGAAGGTGATTCTGAGTTTGTTGTATGTTCACTATCTTCCTTGGGATACGATGGTTGTAATTNTGATCGGAAAAAAT AAATATATGATGTAATA ] [-] EMBL CD074027 [ TTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCACCAAGGATTAATATCAATTGTACGGC G GTTTG TTAGT GACCTTATTTTATCGATGCCTCCCTCTCCAAACAGTTGAAGAACAAACAATTGACCTTTTTTGGCCACAAATATTCATTATTTATTTATTTGTAAAAGAATTGAACAATTACAGTGTTTAAATTCAATACATTCTATGGATGTACAGATGGTAAAATTGAACAAGTACTATTCTCCATGACTGTTGAAGGTGATTCTGAGTTTGTTGTATGTTCACTATCTTCCTTGGGATACGATGGTTGTAATTTTGATCGGAAAAAATCAAATATATGATGTAATAC] consensusID : consensus_10869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [AATTGGCCCTCAGGCCAAGAATCGGCACGAGGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCACAAGGAT] [+] EMBL CD083515 [AATTGGCCCTCAGGCCAAGAATCGGCACGAGGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCACAAGGAT] consensusID : consensus_10869#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [AATAAAAGATGAAAAGGGATCCCCCCCTGCTGATAGAAATAATTTGGTGTATCTAATATCTTTATGTGTGGTGTGGAAGGGCTCTTACCATGAACTTTCTTCATTAATGCACAACGGTATTTTAATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTGTTCCTTAACTGTAGTCTATTTAGCTTTGTAATGTGATATTGTATAGGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGCA] [-] EMBL CD178986 [AATAAAAGATGAAAAGGGATCCCCCCCTGCTGATAGAAATAATTTGGTGTATCTAATATCTTTATGTGTGGTGTGGAAGGGCTCTTACCATGAACTTTCTTCATTAATGCACAACGGTATTTTAATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTGTTCCTTAACTGTAGTCTATTTAGCTTTGTAATGTGATATTGTATAGGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10869#0 GCAAAGTTGGATCCACCTTTCGTGTGCTGTAATACCTAGCAGTCAAAATACATCAATGGC 60 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 ATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCT 120 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 AATATTCTTTATGTGTGGTGTGGGAGGGCTCTTACCATGGAACTTCTTCATTAATGCACA 180 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 ACGGTATTTTGATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGA 240 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 CCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTT 300 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 AGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTT 360 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 TTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCT 420 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 TGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTGTC 480 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 CTTAACTGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGCAGCCATACTTCCT 540 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 TCCAAACATATGAAGGCTGCTTTAGAAGGGCAGGCTGTGTCTGGTATTATTGCATCTCTG 600 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 GCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTT 660 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 TTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATT 720 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 GGCTATTTTAAATATTACTGGGACAAAAAAGACTTACCAGATAACAATAATATTGAATCT 780 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 GATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGC 840 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 ATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTT 900 consensus_10869#1 -------------------------------------AATTGGCCCTCAGGCCAAGAATC 23 consensus_10869#2 --------------------------------------------------------AATA 4 * consensus_10869#0 TTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCT 960 consensus_10869#1 ---GGCACGAGGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCT 80 consensus_10869#2 A--AAGATGAAAAGGGATCCCCCCCTGCTGATAGAAATAATT--TGGTGTATCTAATATC 60 * * * * * * * * * * ** * * * consensus_10869#0 ATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTT 1020 consensus_10869#1 ATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTT 140 consensus_10869#2 TTTATGTGTGGTGTGGAAGGGCTCTTACCATGAACTTTCTTCATTAATGCACAACGGTAT 120 * * * *** ** * ** ** ** * * ** ** * consensus_10869#0 CTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATA------AAA 1074 consensus_10869#1 CTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATA------AAA 194 consensus_10869#2 TTTAATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAA 180 ** ***** * * *** ** * **** ** * * *** consensus_10869#0 TGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTC 1134 consensus_10869#1 TGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTC 254 consensus_10869#2 TATATGACCCGTCCTCAAGTTCTGTTTGT-TAGCTATTTGGCAGTCTGCTCTTTAGTTCC 239 * * * **** * ** ** ** * * **** * * *** * * * * consensus_10869#0 ATC--CCATTATGTATGCTGTGTAATGCACAACCTA---GATATTATTTACCAGTCGT-- 1187 consensus_10869#1 ATC--CCATTATGTATGCTGTGTAATGCACAACCTA---GATATTATTTACCAGTCGT-- 307 consensus_10869#2 TTTTTCCATCATG-ATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCC 298 * **** *** *** * *** ** * * ** * ** * * * consensus_10869#0 -ATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTT 1246 consensus_10869#1 -ATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTT 366 consensus_10869#2 GATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTT 358 **** ** ** * * **** * * * ** * * * ** consensus_10869#0 AT-CTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACC-TGGTAATCAAGA 1304 consensus_10869#1 AT-CTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACC-TGGTAATCAAGA 424 consensus_10869#2 ATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTGTTCCTTA 418 ** * * ** * ** * * *** * * ** * * ** ** * consensus_10869#0 ATCC--GCTGGTGCAGCATTA-AGTATATACTTATCTTTTGGATTAT-CATTTGGTGTTG 1360 consensus_10869#1 ATCC--GCTGGTGCAGCATTA-AGTATATACTTATCTTTTGGATTAT-CATTTGGTGTTG 480 consensus_10869#2 ACTGTAGTCTATTTAGCTTTGTAATGTGATATTGTATAGGTGGTAGTGCTCTTGCTCAAG 478 * * * *** ** * * * ** * * * * * * *** * * consensus_10869#0 CCATATCAGTTGGTTTAGCACAAGGATTATAATCAATTGTACGCGCGTTTGTTAGTGACT 1420 consensus_10869#1 CCATATCAGTTGGTTTAGCACAAGGAT--------------------------------- 507 consensus_10869#2 GTAGCGTATTTGGTGTAGCA---------------------------------------- 498 * * ***** ***** consensus_10869#0 TAATTTTATCGATGCATCCATCACAAAACAGTTGAAGAACAAACAATTGACCTTTTTTGG 1480 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 CCACATATTTTCATTATTTATTTATTTGTAAAAGAATTGAACAATTACAGTGTTTAAATT 1540 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 CAATACATTCTATGGATGTACAGATGGTAAAATTGAACAAGTACTATTCTCCATGACTGT 1600 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 TGAAGGTGATTCTGAGTTTGTTGTATGTTCACTATCTTCCTTGGGATACGATGGTTGTAA 1660 consensus_10869#1 ------------------------------------------------------------ consensus_10869#2 ------------------------------------------------------------ consensus_10869#0 TTNTGATCGGAAAAAATAAATATATGATGTAATAC 1695 consensus_10869#1 ----------------------------------- consensus_10869#2 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||