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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1695 fasta sequence
[GCAAAGTTGGATCCACCTTTCGTGTGCTGTAATACCTAGCAGTCAAAATACATCAATGGCATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCTAATATTCTTTATGTGTGGTGTGGGAGGGCTCTTACCATGGAACTTCTTCATTAATGCACAACGGTATTTTGATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTG-TCCTTAA-CTGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGCAGCCATACTTCCTTCCAAACATATGAAGGCTGCTTTAGAAGGGCAGGCTGTGTCTGGTATTATTGCATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC-AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCA-CAAGGATTATAATCAATTGTAC-GC-GCGTTTG----TTAGT--GACTTAATTTTATCGATGCATCCATCACAAAACAGTTGAAGAACAAACAATTGACCTTTTTTGGCCACATATTTTCATTATTTATTTATTTGTAAAAGAATTGAACAATTACAGTGTTTAAATTCAATACATTCTATGGATGTACAGATGGTAAAATTGAACAAGTACTATTCTCCATGACTGTTGAAGGTGATTCTGAGTTTGTTGTATGTTCACTATCTTCCTTGGGATACGATGGTTGTAATTNTGATCGGAAAAAAT-AAATATATGATGTAATAC]
[-] EMBL CD183428 [GCAAAGTTGGATCCACCTTTCGTGTGCTGTTATACCTAGCAGTCTCAATACATCAATGGCATCTGCAATAAGAGATGAAAAGGGGTTCCCCCCCGCTGATAGATATAATTTGGTGTATCTAATAGTCTTTATGTGTGGTGTGGGAAGGCTCTTACCATGGTACTTCTTCATTAACGCACAACGGTATTTTGATTACAAAATGAGAGATAGGTCTCTCCCTTCAGATGCTGATTACACAGACCCTAAATATATGCCCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTT ]
[+] EMBL CD178863 [ AAAGTTGGATCCACCTTTCGTGTGCTGTAATACCTAGCAGTCAAAATACATCAATGGCATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCTAATATTCTTTATGTGTGGTGTGGGAGGGCTCTTACCATGGAACTTCTTCATTAATGCACAACGGTATTTTGATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTTGCCATGACGCTTATTTCGGGCGTG TCCTTAA CTGTGGTAGTGCTCTTGCTC AGGTAGCGTATTTGGTGaac ]
[+] EMBL CD166288 [ AAATTTGGATCCACCTTTCGCGTGCTGTAATACCTAGCAGTCAAAATACATCAATGGCATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCTAATATTCTTTATGTGTGGTGTGGGAAGGCTCTTACCATGGAACTTCTTCATTAATGCACAACGGTATTTTGATTACAAAATGAGAGGTAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCCGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATG ]
[+] EMBL CD178536 [ AAAGTTGGATCCACCTTTCGTGTGCTGTAATACCTAGCAGTCAAAATACATCAATGGCATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCTAATATTCTTTATGTGTGGTGTGGGAGGGCTCTTACCATGGAACTTCTTCATTAATGCACAACGGTATTTTGATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTGTTCCTTAA CTGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGC ]
[-] EMBL CD063812 [ TGGCATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCTAATACTCTTTATGTGTGGTGTGGGAGGGCTCTTACCATGGAACTTCTTCATTAATGCACAACGGTATTTTGATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGAT ]
[-] EMBL CD189027 [ TATTTCGGTCGTG TCCTTAANCTGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGCAGCCATACTTCCTTCCAAACATATGAAGGCTGCTTTAGAAGGGCAGGCTGTGTCTGGTATTATTGCATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAA ]
[+] EMBL CD187794 [ ATCTCTGGCCGACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGCGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAAT ]
[+] EMBL CD187820 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTT AATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAGAGATGATAATAACGAA ]
[+] EMBL CD187801 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAA ]
[+] EMBL CD187774 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTCTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTANCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTCTTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACAT ]
[+] EMBL CD187688 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAATATTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATTCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGGACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTTCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTT ]
[+] EMBL CD187815 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAGAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTAT ]
[+] EMBL CD187811 [ ATCTCTGGCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCAT ACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTA TTTAAATATTACTGGGACAAAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCGAG ]
[-] EMBL CD186892 [ TATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTG ]
[+] EMBL CD184309 [ CCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTCTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCA ]
[+] EMBL CD184321 [ CCACTAATGGATTAGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTCTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCA ]
[-] EMBL CD097380 [ AGTTTACTTTTTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATTGGCTATTTTAAATATTACTGGGAC AAAAAAGACTTACCAGATAACAATAATATTGAATCTGATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAGCATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGGCAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAG ]
[+] EMBL CD082931 [ aggGTTATTAGCATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCA CAAGGATTATAATCAATTGTAG GCTTCATTTGTCTTTTCTTCAGACTTAATTNTATCGATGCATCCATCACAAA ]
[-] EMBL CD194042 [ atacgGCATAAATAAGAGTGG ATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTTTTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTA ]
[+] EMBL CD079768 [ gcTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCA CAAGGATTATAATCAATTGTAC GC GCGTTTG TTAGT GACTTAATTTTATCGATGCATCCATCACAAAACAGTTGAAGAACAAACAATTGACCTTTTTTGGCCACATATTTTCATTATTTATTTATTTGTAAAAGAATTGAACAATTACAGTGTTTAAATTCAATACATTCTATGGATGTACAGATGGTAAAATTGAACAAGTACTATTCTCCATGACTGTTGAAGGTGATTCTGAGTTTGTTGTATGTTCACTATCTTCCTTGGGATACGATGGTTGTAATTNTGATCGGAAAAAAT AAATATATGATGTAATA ]
[-] EMBL CD074027 [ TTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCACCAAGGATTAATATCAATTGTACGGC G GTTTG TTAGT GACCTTATTTTATCGATGCCTCCCTCTCCAAACAGTTGAAGAACAAACAATTGACCTTTTTTGGCCACAAATATTCATTATTTATTTATTTGTAAAAGAATTGAACAATTACAGTGTTTAAATTCAATACATTCTATGGATGTACAGATGGTAAAATTGAACAAGTACTATTCTCCATGACTGTTGAAGGTGATTCTGAGTTTGTTGTATGTTCACTATCTTCCTTGGGATACGATGGTTGTAATTTTGATCGGAAAAAATCAAATATATGATGTAATAC]
consensusID : consensus_10869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence
[AATTGGCCCTCAGGCCAAGAATCGGCACGAGGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCACAAGGAT]
[+] EMBL CD083515 [AATTGGCCCTCAGGCCAAGAATCGGCACGAGGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCTATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTTCTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATAAAATGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTCATCCCATTATGTATGCTGTGTAATGCACAACCTAGATATTATTTACCAGTCGTATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTTATCTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACCTGGTAATCAAGAATCCGCTGGTGCAGCATTAAGTATATACTTATCTTTTGGATTATCATTTGGTGTTGCCATATCAGTTGGTTTAGCACAAGGAT]
consensusID : consensus_10869#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence
[AATAAAAGATGAAAAGGGATCCCCCCCTGCTGATAGAAATAATTTGGTGTATCTAATATCTTTATGTGTGGTGTGGAAGGGCTCTTACCATGAACTTTCTTCATTAATGCACAACGGTATTTTAATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTGTTCCTTAACTGTAGTCTATTTAGCTTTGTAATGTGATATTGTATAGGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGCA]
[-] EMBL CD178986 [AATAAAAGATGAAAAGGGATCCCCCCCTGCTGATAGAAATAATTTGGTGTATCTAATATCTTTATGTGTGGTGTGGAAGGGCTCTTACCATGAACTTTCTTCATTAATGCACAACGGTATTTTAATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTTAGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTGTTCCTTAACTGTAGTCTATTTAGCTTTGTAATGTGATATTGTATAGGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10869#0 GCAAAGTTGGATCCACCTTTCGTGTGCTGTAATACCTAGCAGTCAAAATACATCAATGGC 60
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 ATCTGCAATAAGAGATGAAAAGGGATACCCCCCTGCTGATAGATATAATTTGGTGTATCT 120
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 AATATTCTTTATGTGTGGTGTGGGAGGGCTCTTACCATGGAACTTCTTCATTAATGCACA 180
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 ACGGTATTTTGATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGA 240
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 CCCTAAATATATGACCCGTCCTCAAGTTCTGTTTGTTAGCTATTTGGCAGTCTGCTCTTT 300
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 AGTTCCTTTTTCCATCATGATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTT 360
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 TTCCCGATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCT 420
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 TGTTTATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTGTC 480
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 CTTAACTGTGGTAGTGCTCTTGCTCAAGGTAGCGTATTTGGTGTAGCAGCCATACTTCCT 540
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 TCCAAACATATGAAGGCTGCTTTAGAAGGGCAGGCTGTGTCTGGTATTATTGCATCTCTG 600
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 GCCAACATTATATCTATTGCGACTTCTTCCTCAGTGACCACTAATGGATTAGTTTACTTT 660
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 TTGGTTGCTCTAGTTTTCATCACCGCTACAGCTGCTATGTTCTTGGTTCTTCCTAAAATT 720
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 GGCTATTTTAAATATTACTGGGACAAAAAAGACTTACCAGATAACAATAATATTGAATCT 780
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 GATCCATCATTAAAAGAAGTGAAAGATGATAATAACGAATCTCAAGAACTAGTTATTAGC 840
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 ATAAATAAGAGTGGAATTTTATCAGCAATGAAAGAAACATTTCTTCCCGGAATTTGTGTT 900
consensus_10869#1 -------------------------------------AATTGGCCCTCAGGCCAAGAATC 23
consensus_10869#2 --------------------------------------------------------AATA 4
*
consensus_10869#0 TTAATCACATTGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCT 960
consensus_10869#1 ---GGCACGAGGATGATTACTCTTTCAATATTCCCAGCAGTTGCAAGACTGATCAGACCT 80
consensus_10869#2 A--AAGATGAAAAGGGATCCCCCCCTGCTGATAGAAATAATT--TGGTGTATCTAATATC 60
* * * * * * * * * * ** * * *
consensus_10869#0 ATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTT 1020
consensus_10869#1 ATCACAGTTATCCCTCAAGATCTGTGGACAAATGTTTATTTTGTGCCAGTACTTGTGTTT 140
consensus_10869#2 TTTATGTGTGGTGTGGAAGGGCTCTTACCATGAACTTTCTTCATTAATGCACAACGGTAT 120
* * * *** ** * ** ** ** * * ** ** *
consensus_10869#0 CTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATA------AAA 1074
consensus_10869#1 CTTTTGTACAATGTTGGTGATTGGTGTGGAAGGATGCTAGCTGGTTTTATA------AAA 194
consensus_10869#2 TTTAATTACAAAATGAGAGATAGGACTCTCCCTCCAGATGCTGATTACACAGACCCTAAA 180
** ***** * * *** ** * **** ** * * ***
consensus_10869#0 TGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTC 1134
consensus_10869#1 TGGCCTAGAAGAAATCAAATGCTATTAGTCTTGTTATTATGTATTCTACGTGCTGCTGTC 254
consensus_10869#2 TATATGACCCGTCCTCAAGTTCTGTTTGT-TAGCTATTTGGCAGTCTGCTCTTTAGTTCC 239
* * * **** * ** ** ** * * **** * * *** * * * *
consensus_10869#0 ATC--CCATTATGTATGCTGTGTAATGCACAACCTA---GATATTATTTACCAGTCGT-- 1187
consensus_10869#1 ATC--CCATTATGTATGCTGTGTAATGCACAACCTA---GATATTATTTACCAGTCGT-- 307
consensus_10869#2 TTTTTCCATCATG-ATGGTTGCCAATTTACTGCTAATGAAATGGTTTTCATCGTTTTCCC 298
* **** *** *** * *** ** * * ** * ** * * *
consensus_10869#0 -ATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTT 1246
consensus_10869#1 -ATTTAAACATGATATTTTCCCAGCACTCATAATTCTATTTTTGGGACTAACTAACGGTT 366
consensus_10869#2 GATTTGTTGTTGGTAGCGTATTGGTGTTCATCGTGTTTCTCTTCACGGTTATCCTTGTTT 358
**** ** ** * * **** * * * ** * * * **
consensus_10869#0 AT-CTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACC-TGGTAATCAAGA 1304
consensus_10869#1 AT-CTAGTATCGATATCAATGATACATGGACCAAGTTTCGCATCACC-TGGTAATCAAGA 424
consensus_10869#2 ATATTGATGTCAGTGCTCGTGCATTTTTGGCCATGACGCTTATTTCGGTCGTGTTCCTTA 418
** * * ** * ** * * *** * * ** * * ** ** *
consensus_10869#0 ATCC--GCTGGTGCAGCATTA-AGTATATACTTATCTTTTGGATTAT-CATTTGGTGTTG 1360
consensus_10869#1 ATCC--GCTGGTGCAGCATTA-AGTATATACTTATCTTTTGGATTAT-CATTTGGTGTTG 480
consensus_10869#2 ACTGTAGTCTATTTAGCTTTGTAATGTGATATTGTATAGGTGGTAGTGCTCTTGCTCAAG 478
* * * *** ** * * * ** * * * * * * *** * *
consensus_10869#0 CCATATCAGTTGGTTTAGCACAAGGATTATAATCAATTGTACGCGCGTTTGTTAGTGACT 1420
consensus_10869#1 CCATATCAGTTGGTTTAGCACAAGGAT--------------------------------- 507
consensus_10869#2 GTAGCGTATTTGGTGTAGCA---------------------------------------- 498
* * ***** *****
consensus_10869#0 TAATTTTATCGATGCATCCATCACAAAACAGTTGAAGAACAAACAATTGACCTTTTTTGG 1480
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 CCACATATTTTCATTATTTATTTATTTGTAAAAGAATTGAACAATTACAGTGTTTAAATT 1540
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 CAATACATTCTATGGATGTACAGATGGTAAAATTGAACAAGTACTATTCTCCATGACTGT 1600
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 TGAAGGTGATTCTGAGTTTGTTGTATGTTCACTATCTTCCTTGGGATACGATGGTTGTAA 1660
consensus_10869#1 ------------------------------------------------------------
consensus_10869#2 ------------------------------------------------------------
consensus_10869#0 TTNTGATCGGAAAAAATAAATATATGATGTAATAC 1695
consensus_10869#1 -----------------------------------
consensus_10869#2 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||