These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [CGAAGTATTGAACACTCATCAGTTGGGATGGCTGAAACATGTGTTGCGTGTGCCCAACGACCGACGTTGCGATGTGTTATGACTGTAGACAGTACGGTTGGACAGAANNCGCTAAGGGCTGGCCAGAAACCAAAACATGGGCACANNAATTCATGAAGTCACCCNGACAAGTGGANCTAGAGCCNNATGTTGGACAGCGTGTAGAAACTAAACCTGGNNTTGGGACTCNNCACGAAGAAATGATANNGCAACCGNNNATGGTATANNGAGACCCTNNTAAATGNNNGCAAAGAAATGCATNNNTCGCTCCCTTTGNNTGTTCCCNNNCCAAANNTTCTANNACCTTGNANNATAGACATGNNGCTCAANNAATCGTATAGCNNAGTGGCGAAAGGTTGCGTCCANCTTTTCGGTGTTCTAACCAAATTATAACTCTGAATTCTTCTTGTCCCTTTCTTTTTTCTCTTTCCAAGTTAATTTCTCAAGATCATACTTCTTGAATAACATCTTCAAACCCTAATCTTTACGATTACTGCTTATACTTTTACTACCTCC] [+] EMBL CD113832 [CGAAGTATTGAACACTCATCAGTTGGGATGGCTGAAACATGTGTTGCGTGTGCCCAACGACCGACGTTGCGATGTGTTATGACTGTAGACAGTACGGTTGGACAGAANNCGCTAAGGGCTGGCCAGAAACCAAAACATGGGCACANNAATTCATGAAGTCACCCNGACAAGTGGANCTAGAGCCNNATGTTGGACAGCGTGTAGAAACTAAACCTGGNNTTGGGACTCNNCACGAAGAAATGATANNGCAACCGNNNATGGTATANNGAGACCCTNNTAAATGNNNGCAAAGAAATGCATNNNTCGCTCCCTTTGNNTGTTCCCNNNCCAAANNTTCTANNACCTTGNANNATAGACATGNNGCTCAANNAATCGTATAGCNNAGTGGCGAAAGGTTGCGTCCANCTTTTCGGTGTTCTAACCAAATTATAACTCTGAATTCTTCTTGTCCCTTTCTTTTTTCTCTTTCCAAGTTAATTTCTCAAGATCATACTTCTTGAATAACATCTTCAAACCCTAATCTTTACGATTACTGCTTATACTTTTACTACCTCC] consensusID : consensus_10877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 547 fasta sequence [AGGGTGCATCACGATCACNCGATGTAGATCGGGAGTCACGAATCGAAGCGACACCTGAGCCGATCGACGAGACCAGTTGGGATGTAGAAACGATCACGGTTCCGATGCCGTCATTGACTGAGGACAGACTGCAGACGGGTTCTGTGTCGGATGCTGTACAGTCAGTGAGCCCACATGAGGACACAGATTCACACGGAAACAATTCTCTCAGTTCGACTGACAACAAGGAGGGTGGGGAAAATGTGTCACAATCCGGTCGAACGAGTGATGTAGATTTTGGTGGACACAGCACTGATGATGACAGTCGAGATGTGGATGAGCGTTCGAGTGTGGATAATGATGTGACGAGTGTGACGAAGGAGGGGCAATCACATGAGACTGAGAGAGGGTCAGTCGCAGTAGATATGGATGGTGAGACTGTGACACAGGTAGTTGGTGAGGACAAGATGGTATCGGTTGGTGAGCACGAAATTGTGGACAATGAACAACAGGGTGCATCACGATCACCCGATGTAGATCGGGAGTCGCCCTTGTCGTCAATCACTAG] [-] EMBL CD143034 [AGGGTGCATCACGATCACNCGATGTAGATCGGGAGTCACGAATCGAAGCGACACCTGAGCCGATCGACGAGACCAGTTGGGATGTAGAAACGATCACGGTTCCGATGCCGTCATTGACTGAGGACAGACTGCAGACGGGTTCTGTGTCGGATGCTGTACAGTCAGTGAGCCCACATGAGGACACAGATTCACACGGAAACAATTCTCTCAGTTCGACTGACAACAAGGAGGGTGGGGAAAATGTGTCACAATCCGGTCGAACGAGTGATGTAGATTTTGGTGGACACAGCACTGATGATGACAGTCGAGATGTGGATGAGCGTTCGAGTGTGGATAATGATGTGACGAGTGTGACGAAGGAG ] [+] EMBL CD134989 [ CATCACGATCACCCGATGTAGATCGGGAGTCACGAATCGAAGCGACACCTGAGCCGATCGACGAGACCAGTTGGGATGTAGAAACGATCACGGTTCCGATGCCGTCATTGACTGAGGACAGACTGCAGACGGGTTCTGTGTCGGATGCTGTACAGTCAGTGAGCCCACATGAGGACACAGATTCACACGGAAACAATTCTCTCAGTTCGACTGACAACAAGGAGGGTGGGGAAAATGTGTCACAATCCGGTCGAACGAGTGATGTAGATTTTGGTGGACACAGCACTGATGATGACAGTCGAGATGTGGATGAGCGTTCGAGTGTGGATAATGATGTGACGAGTGTGACGAAGGAGGGGCAATCACATGAGACTGAGAGAGGGTCAGTCGCGGTAGATATGGATGGTGAGAC ] [+] EMBL CD134968 [ CGACGAGACCAGTTGGGATGTAGAAACGATCACGGTTCCGATGCCGTCATTGACTGAGGACAGACTGCAGACGGGTTCTGTGTCGGATGCTGTACAGTCAGTGAGCCCACATGAGGACACAGATTCACACGGAAACAATTCTCTCAGTTCGACTGACAACAAGGAGGGTGGGGAAAATGTGTCACAATCCGGTCGAACGAGTGATGCTGTTATTGTTGAACGCAACACctttgg ] [-] EMBL CD138275 [ actnGACGAGANCAGTTGGGATGTAGAAACGATCACGGTTCCGATGCCGTCATTGACTGAGGACAGACTGCAGACGGGTTCTGTGTCGGATGCTGTACAGTCAGTGAGCCCACATGAGGACACAGATTCACACGGAAACAATTCTCTCAGTTCGACTGACAACAAGGAGGGTGGGGAAAATGTGTCACAACCCGGTCGAACGAGTGATGTAGATTTTGGTGGACACAGCACTGATGATGACAGTCGAGATGTGGATGAGCGTTCGAGTGTGGATAATGATGTGACGAGTGTGACGAAGGAGGGGCAATCACATGAGAC ] [-] EMBL CD138360 [ gactGACGAGACCAGTTGGGATGTAGAAACGATCACGGTCNCGATGCCGTCATTGACTGAGGACAGACTGCAGACGGGTTCTGTGTCGGATGCTGTACAGTCAGTGAGCCCACATGAGGACACAGATTCACACGGAAACAATTCTCTCAGTTCGACTGACAACAAGGAGGGTGGGGAAAATGTGTCACAACCCGGTCGAACGAGTGATGTAGATTTTGGTGGACACAGCACTGATGATGACAGTCGAGATGTGGATGAGCGTTCGAGTGTGGATAATGATGTGACGAGTGTGACGAAGGAGGGGCAATCACATGAGAC ] [-] EMBL CD138405 [ GGGATGTAGAAACGATCATGGTTCCGATGCCGTCATTGACTGAGGACAGACTGCAGACGGGTTCTGTGTCGGATGCTGTACAGTCAGTGAGCCCACATGAGGACACAGATTCACACGGAAACAATTCTCTCAGTTCGACTGACAACAAGGAGGGTGGGGAAAATGTGTCACAATCCGGTCGAACGAGTGATGTAGATTTTGGTGGACACAGCACTGATGATGACAGTCGAGATGTGGATGAGCGTTCGAGTGTGGATAATGATGTGACGAGCGTGACGAAGGAGGGGCAATCACATGAGAC ] [-] EMBL CD139498 [ ATGCTGTACAGTCAGTGAGCCCACATGAGGACACAGATTCACACGGAAACAATTCTCTCAGTTCGACTGACAACAAGGAGGGTGGGGAAAATGTGTCACAATCCGGTCGAACGAGTGATGTAGATTTTGGTGGACACAGCACTGATGATGACAGTCGAGATGTGGATGAGCGTTCGAGTGTGGATAATGATGTGACGAGTGTGACGAAGGAGGGGCAATCACATGAGACTGAGAGAGGGTCAGTCGCAGTAGATATGGATGGTGAGACTGTGACACAGGTAGTTGGTGAGGACAAGATGGTATCGGTTGGTGAGCACGAAATTGTGGACAATGAACAACAGGGTGCATCACGATCACCCGATGTAGATCGGGAGTCGCCCTTGTCGTCAATCACTAG] [-] EMBL CD137210 [ ccccatAACAAGGAGGGTGGGGAAAATGTGTCACAATCCGGTCGAACGAGTGATGTAGATTTTGGTGGACACAGCACTGATGATGACAGTCGAGATGTGGATGAGCGTTCGAGTGTGGATAATGATGTGACGAGTGTGACGAAGGAGGGGCAATCACATGAGACTGAGAGAGGGTCAGTCGCAGTAGATATGGgga ] consensusID : consensus_10877#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [AAGTGAATATAAGTAGTTTCGTTTGAGATATTGAGGTCGGAGTAATGAAATCATTAGCAGAGTGCACGAACGTATTAGATTTGGGATGCTAAAAACTGCAAATCAATCATTATATTAATCATCTACCCTTGATTTCTTTTTCAATTATATCGTTTCTCATAAAAGAATATTTTTACCGTGATCGATATATCAAGTCCGATTATGCTGATTGTGTGGACTAGTTATGAAATTCTGTTTATTATTTTTAGCAAATGATTTCATGGTTGTTAGACTCATCATTGCTACTATTGCCCTACCAAACATCTTAAATTCAGATATCAGAACTCATTTTATGGGTTCAATTATGTTTTAATGTAATATTTATAGGCAATTCACTTTAATTTATAAACAAAGATGGATAGTGGCCATCAGTGGAATCCAGGACGCGCGTTTCGTCCTATTTGGGACCCGTCAGCTGGATGTACTTGTATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTACCGTTCGCTTCAAACACCATCGCGTTATCCACTT] [+] EMBL CD129501 [AAGTGAATATAAGTAGTTTCGTTTGAGATATTGAGGTCGGAGTAATGAAATCATTAGCAGAGTGCACGAACGTATTAGATTTGGGATGCTAAAAACTGCAAATCAATCATTATATTAATCATCTACCCTTGATTTCTTTTTCAATTATATCGTTTCTCATAAAAGAATATTTTTACCGTGATCGATATATCAAGTCCGATTATGCTGATTGTGTGGACTAGTTATGAAATTCTGTTTATTATTTTTAGCAAATGATTTCATGGTTGTTAGACTCATCATTGCTACTATTGCCCTACCAAACATCTTAAATTCAGATATCAGAACTCATTTTATGGGTTCAATTATGTTTTAATGTAATATTTATAGGCAATTCACTTTAATTTATAAACAAAGATGGATAGTGGCCATCAGTGGAATCCAGGACGCGCGTTTCGTCCTATTTGGGACCCGTCAGCTGGATGTACTTGTATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTACCGTTCGCTTCAAACACCATCGCGTTATCCACTT] consensusID : consensus_10877#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [CAGGAACTCCAGCAAACACGTCTGCCTCCACTCTGTCCGTGTCATCAACCTCTGCCAACTCACCGACAACCACATCGGGTGCCTTTCCCACAGTCTCACAAGGAATCGACCAAGTCCTCTCGTTCACCACGATACGTGACTCCAGTTCCTGCACTTCGGTCTGTTTCATCATCAACTCAAGCTGTGAACGCTCCAGAGCCGTCAACGTCGCCGCATTTTCCTCACGCAGATGGGCAACCTCGACCTGCAGAGACGACACTAGGTCATAAACGTCGTCCTCAATCTCCGTCTGCACACACTCCTCCTCCACAGCAGCAGTGTTCGGTCCACGACTCTCCACGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCGACAGTGCATCAGCTTCGTCCGTGACTTTCAT] [+] EMBL CD147821 [CAGGAACTCCAGCAAACACGTCTGCCTCCACTCTGTCCGTGTCATCAACCTCTGCCAACTCACCGACAACCACATCGGGTGCCTTTCCCACAGTCTCACAAGGAATCGACCAAGTCCTCTCGTTCACCACGATACGTGACTCCAGTTCCTGCACTTCGGTCTGTTTCATCATCAACTCAAGCTGTGAACGCTCCAGAGCCGTCAACGTCGCCGCATTTTCCTCACGCAGATGGGCAACCTCGACCTGCAGAGACGACACTAGGTCATAAACGTCGTCCTCAATCTCCGTCTGCACACACTCCTCCTCCACAGCAGCAGTGTTCGGTCCACGACTCTCCACGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCGACAGTGCATCAGCTTCGTCCGTGACTTTCAT] consensusID : consensus_10877#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 404 fasta sequence [TTATCTTCTCTAGGATCTTTTAAACAGATAAACTTCACTGGAATCATTGGGATCCTGTCAGAGGTAGAAATTTACCTTTTTACACGGTATTTAACCTTTATATATACCTTTAACACGATCGTTTGTTTGGCGGTCATGAAGAGAATAAAATGCTTTGGAGATAAGAATTAACTTGACAGTACAGATCATAGGTCTAGCGATGGAACAAAAGAGTAAAAGGAAAATAACTAATTAGTCATATCATGAGAAGTAATGATAAATACATAAACGAAAAAGTTTTCCCAACCGTATTTTTCTCAATTTCATGTCAGCTTTACAATAGCGATACTTAAAAAGCGAAAGCTACAGTTTCTGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGCA] [+] EMBL CD200198 [TTATCTTCTCTAGGATCTTTTAAACAGATAAACTTCACTGGAATCATTGGGATCCTGTCAGAGGTAGAAATTTACCTTTTTACACGGTATTTAACCTTTATATATACCTTTAACACGATCGTTTGTTTGGCGGTCATGAAGAGAATAAAATGCTTTGGAGATAAGAATTAACTTGACCGTACAGATCATAGGTCTAGCGATGGAACAAAAGAGTAAAAGGAAAATAACTAATTAGTCATATCATGAGAAGTAATGATAAATACATAAACGAAAAAGTTTTCCCAACCGTATTTTTCTCAATTTCATGTCAGCTTTACAATAGCGATACTTAAAAAGCGAAAGCTACAGCTTCTGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGC ] [+] EMBL CD200186 [TTATCTTCTCTAGGATCTTTTAAACAGATAAACTTCACTGGAATCATTGGGATCCTGTCAGAGGTAGAAATTTACCTTCTTACACGGTATTTAACCTTTATATATACCTTTAACACGATCGTTTGTTTGGCGGTCATGAAGAGAATAAAATGCTTTGGAGATAAGAATTAACTTGACAGTACAGATCATAGGTCTAGCGATGGAACAAAAGAGTAAAAGGAAAATAACTAATTAGTCATATCATGAGAAGTAATGATAAATACATAAACGAAAAAGTTTTCCCAACCGTATTTTTCTCAATTTCATGTCAGCTTTACAATAGCGATACTTAAAAAGCGAAAGCTACAGTTTCTGTTTCCGTTTTGGAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGC ] [+] EMBL CD200167 [TTATCTTCTCTAGGATCTTTTAAACAGATAAACTTCACTGGAATCATTGGGATCCTGTCAGAGGTAGAAATTTACCTTTTTACACGGTATTTAACCTTTATATATACCTTTAACACGATCGTTTGTTTGGCGGTCATGAAGAGAATAAAATGCTTTGGAGATAAGAATTAACTTGACAGTACAGATCATAGGTCTAGCGATGGAACAAAAGAGTAAAAGGAAAATAACTAATTAGTCATATCATGAGAAGTAATGATAAATACATAAACGAAAAAGTTTTCCCAACCGTATTTTTCTCAATTTCATGTCAGCTCTACAATAGCGATACTTAAAAAGCGAAAGCTACAGTTTCTGTTTCAGTTTGGAAAGGACCGGAGGCTTGATGGCCTGTGTTAGTCCTGGC ] [+] EMBL CD200224 [TTATCTTCTCTAGGATCTTTTAAACAGATAAACTTCACTGGAACCATTGGGATCCTGTCAGAGGTAGAAATTTACCTTTTTACACGGTATTTAACCTTTATATATACCTTTAACACGATCGTTTGTTTGGCGGTCATGAAGAGAATAAAATGCTTTGGAGATAAGAATTAACTTGACAGTACAGATCATAGGTCTAGCGATGGAACAAAAGAGTAAAAGGAAAATAACTAATTAGTCATATCATGAGAAGTAATGATAAATACATAAACGAAAAAGTTTTCCCAACCGTA TTTTCTCAATTTCATGTCAGCTTTACAATAGCGATACTTAAAAAGCGAAAGCTACAGTTTCTGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGC ] [+] EMBL CD200182 [TTATCTTCTCTAGGATCTTTTAAACAGATAAACTTCACTGGAATCATTGGGATCCTGTCAGAGGTAGAAATTTACCTTTTTACACGGTATTTAACCTTTATATATACCTTTAACACGATCGTTTGTTTGGCGGTCATGAAGAGAATAAAATGCTTTGGAGATAAGAATTAACTTGACAGTACAGATCATAGGTCTAGCGATGGAACAAAAGAGTAAAAGGAAAATAACTAATTAGTCATATCATGAGAAGTAATGATAAATACATAAACGAAAAAGTTTTCCCAACCGTATTTTTCTCAATTTCATGTCAGCTTTACAATAGCGATAC TAAAAAGCGAAAGCTACAGTTTCTGTTTCAGCTTGGAAAGGACAGGAGGCTCGAT ] [-] EMBL CD200199 [ TATCTTCTCTAGGATCTTTTAAACAGATAAACTTCACTGGAATCATTGGGATCCTGTCAGAGGTAGAAATTTACCTTTTTACACGGTATTTAACCTTGATATATACCTTTAACACGATCGTTTGTTTGGCGGTCATGAAGAGAATAAAATGCTTTGGAGATAAGAATTAACTTGACAGTACAGATCATAGGTCTAGCGATGGAACAAAAGAGTAAAAGGAAAATAACTAATTAGTCATATCATGAGAAGTAATGATAAATACATAAACGAAAAAGTTTTCCCAACCGTATTTTTCTCAATTTCATGTCAGCTTTACAATAGCGATACTTAAAAAGCGAAAGCTACAGTTTCTGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGCA] consensusID : consensus_10877#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [GCACCCACTACCAATGCACATTGTAGTGCTCTGACTGACGTACAGATACATTCCACTGATCCATGCATCTGTGGGCCGTTGGATTAATATAAGATTGATAGCATTTGACGACTTCAACGCTCCATAACAATCAATTGATCTCATCATTAACCAGCGCCATCGACACCCACTACCAATCACATTTTAGTGCTCGGCTGACGTCAGAACACTCCACTATCCATCCATCTCTCGGCCGTTGGATTGGTATTTGATTGATAGCATTTCACGACTTCAACGTTCCATAACAATCAATTGATCTCATCATTAACCAGCACCATCGGCGCCCACTACCAATCACATTTTAGTGCTCGACTGACGTCAGTACACTCCACTATCCTGCCATATCTCA] [+] EMBL CD097290 [GCACCCACTACCAATGCACATTGTAGTGCTCTGACTGACGTACAGATACATTCCACTGATCCATGCATCTGTGGGCCGTTGGATTAATATAAGATTGATAGCATTTGACGACTTCAACGCTCCATAACAATCAATTGATCTCATCATTAACCAGCGCCATCGACACCCACTACCAATCACATTTTAGTGCTCGGCTGACGTCAGAACACTCCACTATCCATCCATCTCTCGGCCGTTGGATTGGTATTTGATTGATAGCATTTCACGACTTCAACGTTCCATAACAATCAATTGATCTCATCATTAACCAGCACCATCGGCGCCCACTACCAATCACATTTTAGTGCTCGACTGACGTCAGTACACTCCACTATCCTGCCATATCTCA] consensusID : consensus_10877#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [TTAGATTCAAAGTACTAGTTAGAGATAGCAAATCGATTCGTCATTTAGTAAATCTACAATGACTGAAGCGATTAGGATACGTTTTACTTGTGTCTTTGAAGTCTTCAACTGTTGAACTGAGTCATGATGGTAGGTCTCAGGTGACTTATCTGCGGTCCTTGTGAATTATGTGACCAATGGTTAGAAACTTTAAATGAAATAATCCAAAATCGGTCATAATGGTCTAAATGCATTCATTCTCTTCCTTTCTTTTTTATCATTAAATCACACTTTTACTTACTTACGGCTGTTACTCCCAATGGAGCATAGACCGCGGATCAGCATTCTCCA] [+] EMBL CD095964 [TTAGATTCAAAGTACTAGTTAGAGATAGCAAATCGATTCGTCATTTAGTAAATCTACAATGACTGAAGCGATTAGGATACGTTTTACTTGTGTCTTTGAAGTCTTCAACTGTTGAACTGAGTCATGATGGTAGGTCTCAGGTGACTTATCTGCGGTCCTTGTGAATTATGTGACCAATGGTTAGAAACTTTAAATGAAATAATCCAAAATCGGTCATAATGGTCTAAATGCATTCATTCTCTTCCTTTCTTTTTTATCATTAAATCACACTTTTACTTACTTACGGCTGTTACTCCCAATGGAGCATAGACCGCGGATCAGCATTCTCCA] consensusID : consensus_10877#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [GATATACAAGTGGAAACAGTCTGATTTTGCCATTGTACAACAAATCAAATGTATCAATATTGTTCCATGCGAAGACATACACGTTTGGGAAACAAAGATTGAAGTTTAAATGGAAATGATATATTGCAATGATCTTTAAACATCCGCTACACCAGTTTCATCCTCGTCGAGATCCTGATCATCATCGTCATCTTCATCCTCTTCATCGTCTTCATTTTCTTCGTCTAAATCTGGTGAGAGGTAATATTGCAGTGGATTAGGCCAAATGTCGTCCTT] [+] EMBL CD112439 [GATATACAAGTGGAAACAGTCTGATTTTGCCATTGTACAACAAATCAAATGTATCAATATTGTTCCATGCGAAGACATACACGTTTGGGAAACAAAGATTGAAGTTTAAATGGAAATGATATATTGCAATGATCTTTAAACATCCGCTACACCAGTTTCATCCTCGTCGAGATCCTGATCATCATCGTCATCTTCATCCTCTTCATCGTCTTCATTTTCTTCGTCTAAATCTGGTGAGAGGTAATATTGCAGTGGATTAGGCCAAATGTCGTCCTT] consensusID : consensus_10877#8 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [GTATTGCATATAGAATGGTCAACCGTACAGAGGCTGCACAACTTTTGAAGCACCTTGATAGAGATAAAAGTGGAAAAATTAGCTCACAAGAGTTAATGGAATTTTTGCACACCGTTAACTGTCCATTCAAAAAAGAACAAGTTGAGAAGTTTATCAAGCAGCACGACAAAGACGGAGATGGACAACTAAATACTGATGAACTCCTTGATGTTTTATGTTCATAATTTCGTAAAGTTTCAGTAGTGTTTCTTTCATAAATAAATAGTA] [+] EMBL AA999648 [GTATTGCATATAGAATGGTCAACCGTACAGAGGCTGCACAACTTTTGAAGCACCTTGATAGAGATAAAAGTGGAAAAATTAGCTCACAAGAGTTAATGGAATTTTTGCACACCGTTAACTGTCCATTCAAAAAAGAACAAGTTGAGAAGTTTATCAAGCAGCACGACAAAGACGGAGATGGACAACTAAATACTGATGAACTCCTTGATGTTTTATGTTCATAATTTCGTAAAGTTTCAGTAGTGTTTCTTTCATAAATAAATAGTA] consensusID : consensus_10877#9 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [CTCTGGGACTCGAACCAAGTACCTTTCACTTAAAACACCATCGCGTTATCCACTCGGCTACTGAGTCCCGAGAGTCATTTGCTTGTGCGATGGTGTGAAGATTAAATTCATTTAGTATTGTTTGTTTGGTGGTTTAATATTTGTATGTTGACAAGTACTGGCATAACAAATAGAAAACAAAAAAATAATCAAGTTAACATTGTGAATCAATGTCAAAAAATCCATTCTTTTCTATATGAGGTGATA] [+] EMBL CD195317 [CTCTGGGACTCGAACCAAGTACCTTTCACTTAAAACACCATCGCGTTATCCACTCGGCTACTGAGTCCCGAGAGTCATTTGCTTGTGCGATGGTGTGAAGATTAAATTCATTTAGTATTGTTTGTTTGGTGGTTTAATATTTGTATGTTGACAAGTACTGGCATAACAAATAGAAAACAAAAAAATAATCAAGTTAACATTGTGAATCAATGTCAAAAAATCCATTCTTTTCTATATGAGGTGATA] consensusID : consensus_10877#10 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence [AATTGTACCGTGATAAATTCATGACCCCAAGTGGTCACTCGAATATATGCTACTATCACCAAAATCTGCTCCTGTGCTTGCTTCAGCTATGCTCACGCCTGATGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTA] [+] EMBL BG931985 [AATTGTACCGTGATAAATTCATGACCCCAAGTGGTCACTCGAATATATGCTACTATCACCAAAATCTGCTCCTGTGCTTGCTTCAGCTATGCTCACGCCTGATGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTA] consensusID : consensus_10877#11 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [GAGGATTACCCCAATGATAAAACTCTAATGCATATTTGATTGTAAGCAGCTGATGAGAAACCACGAAATATAATGAATTCATATTATTCTGCATCAATATTTGTTCTGTCTTTATTTAAATTCATAAAGGGAACTAACTGCATGAACTTGTCTTGAAAGTAATCTTTTTGTAAATATTCAAATTTCAGAT] [+] EMBL CD077539 [GAGGATTACCCCAATGATAAAACTCTAATGCATATTTGATTGTAAGCAGCTGATGAGAAACCACGAAATATAATGAATTCATATTATTCTGCATCAATATTTGTTCTGTCTTTATTTAAATTCATAAAGGGAACTAACTGCATGAACTTGTCTTGAAAGTAATCTTTTTGTAAATATTCAAATTTCAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10877#0 -------------------------------CGAAGTATTGAACACTCATCAGTTGGGAT 29 consensus_10877#7 ------------------------------------------------------------ consensus_10877#11 ------------------------------------------------------------ consensus_10877#8 ------------------------------------------------------------ consensus_10877#9 ------------------------------------------------------------ consensus_10877#2 AAGTGAATATAAGTAGTTTCGTTTGAGATATTGAGGTCGGAGTAATGAAATCATTAGCAG 60 consensus_10877#5 ------------------------------------------------------------ consensus_10877#6 ------------------------------------------------------------ consensus_10877#10 ------------------------------------------------------------ consensus_10877#3 ------------------------------------------------------------ consensus_10877#4 ------------------------------------------------------------ consensus_10877#1 ------------AGGGTGCATCACGATCACNCGATGTAGATCGGGAGTCACGAATCGAAG 48 consensus_10877#0 GGCTGAAACATGTGTTGCGTGTGCCCAACGACCGACGTTGCGATGTGTTATGACTGTAGA 89 consensus_10877#7 ----------------------------------------------------------GA 2 consensus_10877#11 ------------------------------------------------------------ consensus_10877#8 ------------------------------------------------------------ consensus_10877#9 ------------------------------------------------------------ consensus_10877#2 AGTGCACGAACGTATTAGATTTGGGATGCTAAAAACTGCAAATCAATCATTATATTAATC 120 consensus_10877#5 ------------------------------------------------------------ consensus_10877#6 ------------------------------------------------------------ consensus_10877#10 ------------------------------------------------------------ consensus_10877#3 -----------------CAGGAACTCCAGCAAACACGTCTGCCTCCACTCTGTCCGTGTC 43 consensus_10877#4 --------------TTATCTTCTCTAGGATCTTTTAAACAGATAAACTTCACTGGAATCA 46 consensus_10877#1 CGACACCTGAGCCGATCGACGAGACCAGTTGGGATGTAGAAACGATCACGGTTCCGATGC 108 consensus_10877#0 CAGTACGGTTGGACAGAANNCGCTAAGGGC--TGGCCAGAAACCAAAACATGGGCACANN 147 consensus_10877#7 TA-TACAAGTGGAAACAGTCTGATTTTGCCATTGTACAACAAATCAAATGTATCAATATT 61 consensus_10877#11 -----------------------------------------------------GAGGATT 7 consensus_10877#8 -----------------GTATTGCATATAGAATGGTCAACCGTACAGAGGCTGCACAACT 43 consensus_10877#9 ----------CTCTGGGACTCGAACCAAGTACCTTTCACTTAAAACACCATCGCGTTATC 50 consensus_10877#2 ATCTACCCTTGATTTCTTTTTCAATTATAT-CGTTTCTCATAAAAGAATATTTTTACCGT 179 consensus_10877#5 --GCACCCACTACCAATGCACATTGTAGTGCTCTGACTGACGTACAGATACATTCCACTG 58 consensus_10877#6 ----TTAGATTCAAAGTACTAGTTAGAGATAGCAAATCGATTCGTCATTTAGTAAATCTA 56 consensus_10877#10 ------------------------------------------------------AATTGT 6 consensus_10877#3 ATCAACCTCTGCCAACTCACCGACAACCACATCGGGTGCCTTTCCCACAGTCTCACAAGG 103 consensus_10877#4 TTGGGATCCTGTCAGAGGTAGAAATTTACCTTTTTACACGGTATTTAACCTTTATATATA 106 consensus_10877#1 CGTCATTGACTGAGGACAGACTGCAGACGGGTTCTGTGTCGGATGCTGTACAGTCAGTGA 168 consensus_10877#0 AATTCA-TGAAGTCACCCNGACAAGTGGA--NCTAGAGCCNNATGTTGGACAGCG---TG 201 consensus_10877#7 GTTCCA-TGCGAAGACATACACGTTTGG-------GAAACAAAGATTGAAGTTTA---AA 110 consensus_10877#11 ACCCCAATGATAAAACTCTAATGCAT----------ATTTGATTGTAAGCAGCTG---AT 54 consensus_10877#8 TTTGAAGCACCTTGATAGAGATAAAAGTG--GAAAAATTAGCTCACAAGAGTTAA---TG 98 consensus_10877#9 CACTCGGCTACTGAGTCCCGAGAGTC----------ATTTGCTTGTGCGATGGTG---TG 97 consensus_10877#2 GATCGATATATCAAGTCCGATTATGCTGATTGTGTGGACTAGTTATGAAATTCTG---TT 236 consensus_10877#5 ATCCATGCATCTGTGGGCCGTTGGATTAATATAAGATTGATAGCATTTGACGACT---TC 115 consensus_10877#6 CAATGACTGAAGCGATTAGGATACGTTTTACTTGTGTCTTTGAAGTCTTCAACTG---TT 113 consensus_10877#10 ACCGTGATAAATTCATGACCCCAAGTGGTC------ACTCGAATATATGCTACTA---TC 57 consensus_10877#3 AATCGACCAAGTCCTCTCGTTCACCACGATACGTGACTCCAGTTCCTGCACTTCGGTCTG 163 consensus_10877#4 CCTTTAACACGATCGTTTGTTTG-GCGGTCATGAAGAGAATAAAATGCTTTGGAGATAAG 165 consensus_10877#1 GCCCACATGAGGACACAGATTCACACGGAAACAATTCTCTCAGTTCGACTGACAACAAGG 228 consensus_10877#0 TAGAAACTAAACCTGGNNTTGGGACTCNNCACGAA---GAAATGATA--NNGCAACCGNN 256 consensus_10877#7 TGGAAATGATATATTGCAATGA---TCTTTA--AA---CATCCGCTA--CACCAGT--TT 158 consensus_10877#11 GAGAAACCACGAAATATAATGA----ATTCA---------TATTATT--CTGCATCAATA 99 consensus_10877#8 GAATTTTTGCACACCGTTAACTGTCCATTCAAAAA---AGAACAAGT--TGAGAAG--TT 151 consensus_10877#9 AAGATTAAATTCATTTAGTATTGTTTGTTTG----------GTGGTT--TAATATTTGTA 145 consensus_10877#2 TATTATTTTTAGCAAATGATTTCATGGTTGTTAGA---CTCATCATTGCTACTATTGCCC 293 consensus_10877#5 AACGCTCCATAACAATCAATTGATCTCATCATTAACC-AGCGCCATCGACACCCACTACC 174 consensus_10877#6 GAACTGAGTCATGATGGTAGGTCTCAGGTGACTTA---TCTGCGGTCCTTGTGAATTATG 170 consensus_10877#10 ACCAAAATCTGCTCCTGTGCTTG---CTTCAGCTATG-CTCACGCCTGATGCTTCCCGCT 113 consensus_10877#3 TTTCATCATCAACTCAAGCTGTGAACGCTCCAGAGCC-GTCAACGTCGCCGCATTTTCCT 222 consensus_10877#4 AATTAACTTGACAGTACAGATCATAGGTCTAGCGATGGAACAAAAGAGTAAAAGGAAAAT 225 consensus_10877#1 AGGGTGGGGAAAATGTGTCACAATCCGGTCGAACGAGTGATGTAGATTTTGGTGGACACA 288 consensus_10877#0 -NATGGTATANNGAGACCCTNNTAAATGNNNGCAAAGAAATGC-ATNNNTCGCTCCCTTT 314 consensus_10877#7 -CATCCT-CGTCGAGATCCTGATCATCATCGTCAT----CTTC-ATCCTCTTCATCGTCT 211 consensus_10877#11 -TTTGTTCTGTCTTTATTTAAATTCATAAAGGGAACTAACTGC-ATGAACT-TGTCTTGA 156 consensus_10877#8 -TATCAAGCAGCACGACAAAGACGGAGATGGACAACTAAAT---ACTGATGAACTCCTTG 207 consensus_10877#9 -TGTTGACAAGTACTGGCATAACAAATAGAAAACAAAAAAATA-ATCAAGTTAACATTGT 203 consensus_10877#2 -TACCAAACATCTTAAATTCAGATATCAGAACTCATTTTATGG-GTTCAATTATGTTTTA 351 consensus_10877#5 -AATCACATTTTAGTGCTCGGCTGACGTCAGAACACTCCACTA-TCCATCCATCTCTCGG 232 consensus_10877#6 -TGACCAATGGTTAGAAACT-TTAAATGAAATAATCCAAAATC-GGTCATAATGGTCTAA 227 consensus_10877#10 -AGCCA--CAGCGACCCTCCTACTCGTTGCCGTCACTCCATGC-CTAGACCAAGTGCAGC 169 consensus_10877#3 -CACGCAGATGGGCAACCTCGACCTGCAGAGACGACACTAGGT-CATAAACGTCGTCCTC 280 consensus_10877#4 -AACTAATTAGTCATATCATGAGAAGTAATGATAAATACATAA-ACGAAA-AAGTTTTCC 282 consensus_10877#1 GCACTGATGATGACAGTCGAGATGTGGATGAGCGTTCGAGTGTGGATAATGATGTGACGA 348 consensus_10877#0 GNNTGTTCCCNNNC---CAAANNTTCTANNACCTTGNANNATAGACATGNNGCTCAANNA 371 consensus_10877#7 TCATTTTCTTCGTC---TAAATCTGGTGAGAGGTAATATTGCAGTGGATTAGGCCAAATG 268 consensus_10877#11 AAGTAATCTTTTTG---TAAATATTC--AAATTTCAGAT--------------------- 190 consensus_10877#8 ATGTTTTATGTTCA---TAATTTCGTAAAGTTTCAGTAGTGTTTCTTTCATAAATAAATA 264 consensus_10877#9 GAATCAATGTCAAA---AAATCCATTCTTTTCTATATGAGGTGATA-------------- 246 consensus_10877#2 ATGTAATATTTATAGG-CAATTCACTTTAATTTATAAACAAAGATGGATAGTGGCCATCA 410 consensus_10877#5 CCGTTGGATTGGTAT--TTGATTGATAGCATTTCACGACTTCAACGTTCCATAACAATCA 290 consensus_10877#6 ATGCATTCATTCTCTT-CCTTTCTTTTTTATCATTAAATCACACTTTTACTTACTTACGG 286 consensus_10877#10 TTGCCCTCACACAGCA-TAGGCCTA----------------------------------- 193 consensus_10877#3 AATCTCCGTCTGCACA-CACTCCTCCTCCACAGCAGCAGTGTTCGGTCCACGACTCTCCA 339 consensus_10877#4 CAACCGTATTTTTCTC-AATTTCATGTCAGCTTTACAATAGCGATACTTAAAAAGCGAAA 341 consensus_10877#1 GTGTGACGAAGGAGGGGCAATCACATGAGACTGAGAGAGGGTCAGTCGCAGTAGATATGG 408 consensus_10877#0 ATCGTATAGCNNAGTGGCGAAAGGTTGCGTCCANCTTTTCGGTGTTCTAACCAAATTATA 431 consensus_10877#7 -TCGTCCTT--------------------------------------------------- 276 consensus_10877#11 ------------------------------------------------------------ consensus_10877#8 GTA--------------------------------------------------------- 267 consensus_10877#9 ------------------------------------------------------------ consensus_10877#2 GTGGAATCCAGGACGCGCGTTTCGTCCTATTTGGGACC-CGTCAGCTGGATGTACTTGTA 469 consensus_10877#5 ATTGATCTCATCATTAACCAGCACCATCGGCGCCCACTACCAATCACATTTTAGTGCTCG 350 consensus_10877#6 CTGTTACTCCCAATGGAGCATAGACCGCGGATCAGCATTCTCCA---------------- 330 consensus_10877#10 ------------------------------------------------------------ consensus_10877#3 CGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGT 399 consensus_10877#4 GCTACAGTTTCTGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTG 401 consensus_10877#1 ATGGTGAGACTGTGACACAGGTAGTTGGTGAGGACAAGATGGTATCGGTTGGTGAGCACG 468 consensus_10877#0 ACTCTGAATTCTTCTTGTCCCTTTCTTTTTTCTCTTTCCAAGTTAATTTCTCAAGATCAT 491 consensus_10877#7 ------------------------------------------------------------ consensus_10877#11 ------------------------------------------------------------ consensus_10877#8 ------------------------------------------------------------ consensus_10877#9 ------------------------------------------------------------ consensus_10877#2 TCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTACCGTTCGCTTCAAACACCATC 529 consensus_10877#5 ACTGACGTCAGTACACTCCACTATCCTGCCATATCTCA---------------------- 388 consensus_10877#6 ------------------------------------------------------------ consensus_10877#10 ------------------------------------------------------------ consensus_10877#3 CCAAATCACGTCGTTCTGCCTCGACAGTGCATCAGCTTCGTCCGTGACTTTCAT------ 453 consensus_10877#4 GCA--------------------------------------------------------- 404 consensus_10877#1 AAATTGTGGACAATGAACAACAGGGTGCATCACGATCACCCGATGTAGATCGGGAGTCGC 528 consensus_10877#0 ACTTCTTGAATAACATCTTCAAACCCTAATCTTTACGATTACTGCTTATACTTTTACTAC 551 consensus_10877#7 ------------------------------------------------------------ consensus_10877#11 ------------------------------------------------------------ consensus_10877#8 ------------------------------------------------------------ consensus_10877#9 ------------------------------------------------------------ consensus_10877#2 GCGTTATCCACTT----------------------------------------------- 542 consensus_10877#5 ------------------------------------------------------------ consensus_10877#6 ------------------------------------------------------------ consensus_10877#10 ------------------------------------------------------------ consensus_10877#3 ------------------------------------------------------------ consensus_10877#4 ------------------------------------------------------------ consensus_10877#1 CCTTGTCGTCAATCACTAG----------------------------------------- 547 consensus_10877#0 CTCC 555 consensus_10877#7 ---- consensus_10877#11 ---- consensus_10877#8 ---- consensus_10877#9 ---- consensus_10877#2 ---- consensus_10877#5 ---- consensus_10877#6 ---- consensus_10877#10 ---- consensus_10877#3 ---- consensus_10877#4 ---- consensus_10877#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||