These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1008 fasta sequence [AGGCCAAGGATAGGGCACGAGGAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAGGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG] [+] EMBL CD081355 [AGGCCAAGGATAGGGCACGAGGAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAGGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGGCACTTCTGATGANCATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCCTCACGTACTGTTTGTCTAAC AT TATGAATCCAGCTCTCAAAGTA TCTGGTA AAACATATGTATACAGGGGTTTTGCATCCGG TTAT AAGGAT ATCCATGGT AAGTTTCTGAG TTTTGGATAAACCAA ] [+] EMBL CD078805 [ AGCGTCTCCGTCTTTCCTTGTTGATGGCGGAGGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGGCACTTCTGATGACAATTGACTNTCCGTGTTCATTTCC ATCACATTTAT AATGACAGTTT ] [+] EMBL BG932475 [ AGGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGAGATATACCTTTTTCGCCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCT ] [-] EMBL CD073265 [ GGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGA ] [-] EMBL CD075187 [ CTTACATATCTGNAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAA ] [+] EMBL CD131339 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGCAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATACTCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTNTCCAGTAGTCTTG] [+] EMBL CD131479 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTGGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG] [+] EMBL CD131534 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCCGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG] [+] EMBL CD131586 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG] [+] EMBL CD131272 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAGAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAGATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG] [+] EMBL CD131576 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAGAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAGATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG] consensusID : consensus_10884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 805 fasta sequence [CCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTNTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTANGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCT--AAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATC-TACATCTCTAATC-TGTGACTAGTAGGANTTTGGNC-TGATTTTAACTATTGCCCTCAAAATTTGGGTTGG-TGGTGCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGG] [-] EMBL CD120479 [CCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTNTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTANGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTCTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATT ] [+] EMBL CD136526 [ AACCTTACGAGGGGGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGcc ] [+] EMBL SM908 [ GTGGATTCCCTTTAACTTACTTATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCT AAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGNGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGGTNGGTGGTAGTGTAGATCTTACATCTCTAATCTTGTGACTAGTAGGANTTTGGNCTTGATTTTAACTATTGGCCTCAAAAATTGGGGTGG GGGTGgtc ] [+] EMBL CD065666 [ CCCTTCAT ATGTTCCTGCCTTACAGATGA CACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGACCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATC TACATCTCTAATC TGTGACTAGTA GAATTTTGTC TGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGG] [+] EMBL CD167272 [ CCCTC TAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGC AAANGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTA AAAAAAAGAGCTATGATGATGGAAAAAG ] [+] EMBL CD137167 [ GCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTA AAAAAAAGAGCTATGATGATGGAAAAAGTTAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTACATC TACATCTCTAATC TGTGACTAGTAGAATATTGG C TGATTTTAACTATTGCCCTCAAAATTTGGGTTGG TTGCTCACGTACTGTTTGTTTAACACTTTATG ATCCACCTCTTAAAGTGGCCTGGTAGATACATATGTATACCGGGTGTTCc ] [-] EMBL CD136575 [ CACGATGCAAAATGTTTNTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCT AAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAA ] [+] EMBL CD146353 [ CATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCT AAAAAAAGAGCTATGATGATGGAAAAAGTTAGAA ] consensusID : consensus_10884#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [GTTTTTAGTTATGGTAATTCCTCTTTACAGAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAAGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTGT] [-] EMBL CD131509 [GTTTTTAGTTATGGTAATTCCTCTTTACAGAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAAGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTGT] consensusID : consensus_10884#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [TTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCAGGATAAAGGCTACAAAAGTACCAGTTCTTTCCATAGAAAAAGTTGGCTTAGCTGAAGTTGTAGGCCCCTCTGACATACATACGCAGTCTCAACAAAATATTTGCTCGGGTAAGAAAATAGAATTTGTCTGGTGTTTTTTTAGTATGTGTTCCGCAGGGTCCTGCTTATTTATCCTTTCCACAGCTTCAGAAGAACACTGAAATCAATATTTCTTTCCTTCAAAGAGCGTCCACATTCACAGTACAAAATAGTTCTATGTCTATTCCTACGGAGAAACAAAATTATTAAATACACTTTGTTTTCCAAGTTCCGTGAAGC] [-] EMBL CD128417 [TTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCAGGATAAAGGCTACAAAAGTACCAGTTCTTTCCATAGAAAAAGTTGGCTTAGCTGAAGTTGTAGGCCCCTCTGACATACATACGCAGTCTCAACAAAATATTTGCTCGGGTAAGAAAATAGAATTTGTCTGGTGTTTTTTTAGTATGTGTTCCGCAGGGTCCTGCTTATTTATCCTTTCCACAGCTTCAGAAGAACACTGAAATCAATATTTCTTTCCTTCAAAGAGCGTCCACATTCACAGTACAAAATAGTTCTATGTCTATTCCTACGGAGAAACAAAATTATTAAATACACTTTGTTTTCCAAGTTCCGTGAAGC] consensusID : consensus_10884#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [CCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAACACTTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAGCTAAAAAAAGAGCTATGATGATGGAAAAGTAGAGAGGTAAGTTCCGTGAGC] [-] EMBL CD065456 [CCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAACACTTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAGCTAAAAAAAGAGCTATGATGATGGAAAAGTAGAGAGGTAAGTTCCGTGAGC] consensusID : consensus_10884#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 171 fasta sequence [CAARTGGATAGGGACTTATATTGVGGACGTCTATGACGCTGGCCCVBNTBSCGGACAATACCCCTGAAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAAGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGA] [-] EMBL BE519406 [CAARTGGATAGGGACTTATATTGVGGACGTCTATGACGCTGGCCCVBNTBSCGGACAATACCCCTGAAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAAGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGA] [-] EMBL SMLRAP021 [CAARTGGATAGGGACTTATATTGVGGACGTCTATGACGCTGGCCCVBNTBSCGGACAATACCCCTGAAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAAGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10884#0 AGGCCAAGGATAGGGCACGAGGAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAGGGGGCG 60 consensus_10884#2 ------------------------------------------------------------ consensus_10884#3 ------------------------------------------------------------ consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 ------------------------------------------------------------ consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 TTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGA 120 consensus_10884#2 ------------------------------------------------------------ consensus_10884#3 ------------------------------------------------------------ consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 ------------------------------------------------------------ consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 AACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAA 180 consensus_10884#2 ------------------------------------------------------------ consensus_10884#3 ------------------------------------------------------------ consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 -----------------------------------------------------------C 1 consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 ATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCT 240 consensus_10884#2 ------------------------------------------------------------ consensus_10884#3 ------------------------------------------------------------ consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 CTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTNTAATTCAAGATTTTGCCA 61 consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 GGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCA 300 consensus_10884#2 ------------------------------------------------------------ consensus_10884#3 ------------------------------------------------------------ consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 AATTATGGAGCGTGACTTCTTCCGGTAATTATAGATCAGGAAAGACTTGATCGCCTGAAT 121 consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 TGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTC 360 consensus_10884#2 ------------------------------------------------------------ consensus_10884#3 ------------------------------------------------------------ consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 AATGAAGCTANGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCC 181 consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 TTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGG 420 consensus_10884#2 ------------------------------------------------------------ consensus_10884#3 ------------------------------------------------------------ consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 ATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGG 241 consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 CATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAA 480 consensus_10884#2 -------------------------------------------GTTTTTAGTTATGGTAA 17 consensus_10884#3 ------------------------------------------------------------ consensus_10884#4 --------------------------------------------CCTTCATAGATGTTCC 16 consensus_10884#1 ATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCC 301 consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 TCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAGAGGTAAAGAAAAT 540 consensus_10884#2 TTCCTCTTTACAGAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAAT 77 consensus_10884#3 -------------------------TTCACGATGCAAAATGTTTTTAAT-TCAAGATTTT 34 consensus_10884#4 TGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAAT-TCAAGATTTT 75 consensus_10884#1 TGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAAT-TCAAGATTTT 360 consensus_10884#5 -----------CAARTGGATAGGGACTTATATTGVGGACGTCTATGACGCTGGCCCVBNT 49 * * ** * * * * consensus_10884#0 G--GAGCCGATGGCCACTCTACCATACAGCGCGTT-TAAAGACTGCAACTTCTGATGACA 597 consensus_10884#2 G--GAGCCGATGGCCACTCTACCATACAGCGCGTT-TAAAGACTGCAACTTCTGATGACA 134 consensus_10884#3 GCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAG 94 consensus_10884#4 GCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAG 135 consensus_10884#1 GCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAG 420 consensus_10884#5 BSCGGACAATACCCCTGAAGCGTCTCCGTCTTTCCTT----GTTGATGGCGGAAGGGGCG 105 * * * ** consensus_10884#0 ATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAG 657 consensus_10884#2 ATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAG 194 consensus_10884#3 ACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCAGGATAAAGGCT 154 consensus_10884#4 ACAACACTTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAA--GCT 193 consensus_10884#1 ACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAA-GCT 479 consensus_10884#5 TTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGA 165 * * * *** * consensus_10884#0 ATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAA 717 consensus_10884#2 ATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAA 254 consensus_10884#3 ACAAAAGTACCAGTTCTTTCCATAGAAAAAGTTGGCTTAGCTGAAGTTGTAGGCCCC--- 211 consensus_10884#4 AAAAAAAGA---GCTATGATGATGGAAAAG--TAGAGAGGTAAGTTCCGTGAGC------ 242 consensus_10884#1 AAAAAAAGA---GCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCG--- 533 consensus_10884#5 AACAGA------------------------------------------------------ 171 * consensus_10884#0 ATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAG 777 consensus_10884#2 ATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAG 314 consensus_10884#3 -TCTGACATACA-----TACGCAGT-----CTCAACAAAATATTTGCTCGGGTAAGAAAA 260 consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 -ATGGCCACTCTA---CCATACAGC-----GCGTTTAAAGACTGCAACTTCTGATGACAA 584 consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 TAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCA 837 consensus_10884#2 TAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAAGATAATTCA 374 consensus_10884#3 TAG-------AATTTGTCTG---GTGTTTTTTTAGTATGTGTTCCGCAGGGTCCTGCTTA 310 consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 TTG-------ACTTTCCGTG---TTCATTTCCAATCACATTTATAAATGACAGTTTGTTG 634 consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 TTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGT 897 consensus_10884#2 TTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAA--ATTTCAGCCCATTATTGTTGT 432 consensus_10884#3 TTTATCCTT-TCCACAGCTTCAGAAGAACACTGAAAT------CAATATTTCTTTCCTTC 363 consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 TTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAG------GANTTTGGNCTGATTTT 688 consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 AATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGG 957 consensus_10884#2 AATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGG 492 consensus_10884#3 AAAGAGCGTCCACAT--TCACAGTA-CAAAATA---GTTCTATGTCTATTCCTACGGAGA 417 consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 AACTATTGCCCTCAAAATTTGGGTT-GGTGGTGCACGTACTGTTTGTTTAACAATATATG 747 consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 AAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG--------- 1008 consensus_10884#2 AAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTGT-------- 544 consensus_10884#3 AACAAAATTATTAAATACACT---TTGTTTTCCAAGTTCCGTGAAGC------------- 461 consensus_10884#4 ------------------------------------------------------------ consensus_10884#1 AATCCAGCTCTCAAAGTAGTC---TGGTAGATACATATGTATACAGGGTTTTCGCATTCG 804 consensus_10884#5 ------------------------------------------------------------ consensus_10884#0 - consensus_10884#2 - consensus_10884#3 - consensus_10884#4 - consensus_10884#1 G 805 consensus_10884#5 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||