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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 2050 fasta sequence
[CAAGGTTTTTTATTTTTACAACTCTTAACCCCGTTTAAAAGTCCCATTTTGGGGTTAAGGTACCCATTTTTCCGGGAGTTAATTTTGGTTTTTCTTTAACGTTTAAGTCCCAAGAAATGGGTAAAAAACCCCTTTTAAGTTTAGTATTTGTTGTGAAACGGAAATCAATTCCCAAGAGTAATGGTCCTATAGTCAAACGGANCATCAAAGTGAAAACCTCGTAAATAATCGAAAAGANAACCTTTTTCTATTTATTGAGTGGCATCTCATCAGTCAACATTTTTCACTTAGTTATGGACACACGGTTCAAGTTTGAACTTGTGACTAATTAGCTGACAGAAAAATGCTCGAACAACTAGTTTTCTGCTCAACCACGTTTAATGAAAGAAAAGGTCCAAATGTCTGATTATTTTATTTTGTTGTATAAATTATATCGAGTAATTACAGCTTTCATCCGGTTCCCATGTCAATTCGACGTCTTTTTGCTTCCAACTGGCGTACTTCTTTTTCCTTTCGCTTGATAGAATGCACCATTTTCTTATATACATTTTTGTGTTTTTTCGGCAACATTAACTCCCTCAACTTACGTTCAGCATTTGCTTCCTCCTTCTCTTTGTACATCTTAACTGTTTTGC-TTTCAGCTCGACCA-GGTGTTACTTTGGGTTCCTTACCTTTTGAAACTTTCTTAAGTTTACATCGCTCCTTTGTCTGAACATTTGTTTTTAAATCATTTTGCTTTTTAGTGGAAGAATCATCCAAAAGGTCATTATCCACTTCTGATTGACTCTCAATAGTGCCTTCAGACTGGGCTTGGACTCTAGCTCCACGGATTTCAGCCAGACTCACCAAACCAGCGAGGTAATCAGCCTCTGGTGGACGATAGATGGATGCA-CCATCCCCAAATCCAGGAGCGACACCGA-CAAGCCCACCACGGTTTGAAAGTGACATAACTGCTGTGTCTAAAAGTTCATCAGTACCAGAACTTCCAATAAACGGACTTAAATGAGGTGGGAGACTACAACCCGGTAAGTAATCTTGTGTTGGTAGTAGTCTCCCTGCATTTAAACAGTCGAAAACCCACTGTGGTTGGACATAGTAACGTGTCAATTTCATATCTGTCATCGGACGATCTACTACTTGATAGTCAATAGTAGGATCATCTTCTTGGAATGTATATCCTGGAGAAACAATTTTATCCCAGGAACACTCCCCGCCACAAGATCGTATAATCAAACATATCGCTTCCCGTGGAACTTCACGCATAAGGAAAAACCGTTTGTTTTTGAAAAGCTTTTTCACGTTTTGAACTTCTATTTGCTTACTTATCGCTTGCGAAACCTGCTCGTCAATAGCCTGCAGCTCTGTCAAATCATCAACTTCAACATCATTTAATGGCTCTGTGCGTTTTAGCGGAAAGCTGAGGGACGACATAAACTCGAAAAGACTTTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAACACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCC-AGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATG--------CCTTCCGAACTGCTTGAGTTGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCTGTCACTTATATCCCGCAAAGCATCCTGCCTCGTAGGGTATCTTTCT-TTGACG-ATTTGATGAA-GCGTATAT-CTTGGCTTATTTATCCTTACTCGAAACTCCTTCTCTTTATCTTTTCGTTCTCGTGCTTTCTTGAGCTTTACATGGAATACCCGAAGTTTCCTAAACGTTTCTATCAAAGGCTCATGTGACAGAAAGAAAAGATAAAGAAGA]
[-] EMBL CD079674 [CAAGGTTTTTTATTTTTACAACTCTTAACCCCGTTTAAAAGTCCCATTTTGGGGTTAAGGTACCCATTTTTCCGGGAGTTAATTTTGGTTTTTCTTTAACGTTTAAGTCCCAAGAAATGGGTAAAAAACCCCTTTTAAGTTTAGTATTTGTTGTGAAACGGAAATCAATTCCCAAGAGTAATGGTCCTATAGTCAAACGGANCATCAAAGTGAAAACCTCGTAAATAATCGAAAAGANAACCTTTTTCTATTTATTGAGTGGCATCTCATCAGTCAACATTTTTCACTTAGTTATGGACACACGGTTCAAGTTTGAACTTGTGACTAATTAGCTGACAGAAAAATGCTCGAACAACTAGTTTTCTGCTCAACCACGTTTAATGAAAGAAAAGGTCCAAATGTCTGATTATTTTATTTTGTTGTATAAATTATATCGAGTAATTACAGCTTTCATCCGGTTCCCATGTCAATTCGACGTCTTTTTGCTTCCAACTGGCGTACTTCTTTTTCCTTTCGCTTGATAGAATGCACCATTTTCTTATATACATTTTTGTGTTTTTTCGGCAACATTAACTCCCTCAACTTACGTTCAGCATTTGCTTCCTCCTTCTCTTTGTACATCTTAACTGTTTTGC TTTCAGCTCGACCA GGTGTTACTTTGGGTTCCTTACCTTTTGAAACTTTCTTAAGTTTACATCGCTCCTTTGTCTGAACATTTGTTTTTAAATCATTTTGCTTTTTAGTGGAAGAccct ]
[-] EMBL SMAA28854 [ cgTTAATG AAGGAAAGG CCAAATG CTGA TATTTTATTTTG TG ATAAA TATATCGAGTAATTACAGCTTTCATCCGG TCCCATGTCAATTCGACGTCTTTTTGCTTCCAACTGGCGAACTTC TTTTCCTTTCGCTTGGTAGAATGCACCATTTTCTTATATACA TTTTGTGTTTTTTC GCAACAATAACTCCCTCAACTTACGTTCAGCATTTGCTTCCTCCTTCTCTTTGTACATCTTAACTGTTTTTCGTTTCAGCTCGACCA GGTGTTACTTTGGGTTCCTTACCTTTTGAAACTTTCTTAAGTTTACATCGCTCCTTTGTCTGAACATTTGTTTTTAAATCATTTTGCTTTTTAGTGGAAGAATCATCCAAAAGGTCATTATCCACTTCTGATTGACTCTCAATAGTGCCTTCAGACTGGGCTTGGACTCTAGCTCCACGGATTTCAGCCAGACTCACCAAACCAGCGAGGTAATCAGCCTCTGGTGGACGATAGATGGATGCA CCATCCCCAAATCCAGGAGCGACACCGA CAAGC ]
[-] EMBL BF936598 [ GACCAGGGTG TACTTTGGGGTCCTTACCTTTTGAAACTTTCTT AGTTTACATCGCTCC TTGTCTGAACA TTGTTTTTAAATCATTTTGC TTTTAGTGGAAGAATCATCCAAAAGGTCATTATCCACTTCTGATTGACTCTCAATAGTGCCTTCAGACTGGGCTTGGACTCTAGCTCCACGGATTTCAGCCAGACTCACCAAACCAGCGAGGTAATCAGCCTCTGGTGGACGATAGATGGATGCA CCATCCCCAAATCCAGGAGCGACACCGACCAAGCCCACCACGGTTTGAAAGTGACATAACTGCTGTGTCTAAAAGTTCATCAGTACCAGAACTTCCAATAAACGGACTTAAATGAGGTGGGAGACTACAACCCGGTAAGTAATCTTGTGTTGGTAGTAGTCTCCCTGCATTTAAACAGTCGAAAACCCACTGTGGTTGGACATAGTAACGTGTCAATTTCATATCTGTCATCGGACGATCTACTACTTGATAGTCAATAGTAGGATCATCTTCTTGGAATGTATATCCTGGAGAAACAATTTTATCCCAGGAACACTCCCCGCCACAAGATCGTATAATCAAACATATCGCTTCCCGTGGAACTTCACGCATAAGGAAAAACCGTTTGTTTTTGAAAAGCTTTTTCACGTTTTGAACTTCTATTTGCTTACTTATCGCTTGCGAAACCTGCTCGTCAATAGCCTGCAGCTCTGTCAAATCATCAACTTCAACATC ]
[-] EMBL AA559465 [ CTGGTGGACGATAGATGGATGCACCCATCCCCAAATCCAGGAGTGACACCGA CAAGCCCACCACGGTTTGAAAGTGACATAACTGCTGTGTCTAAAAGTTCATCAGTACCAGAACTTCCAATAAACGGACTTAAATGAGGTGGGAGACTACAACCCGGTAAGTAATCTTGTGTTGGTAGTAGTCTCCCTGCATTTAAACAGTCGAAAACCCACTGTGGTTGGACATAGTAACGTGTCAATTTCATATCTGTCATCGGACGATNTACTACTTGATAGTCNATAGTAGGA ]
[-] EMBL CD160590 [ GTTCATCAGTACCAGAACTTCCAATAAACGGACTTAAATGAGGTGGGAGACTACAACCCGGTAAGTAATCTTGTGTTGGTAGTAGTCTCCCTGCATTTAAACAGTCGAAAACCCACTGTGGTTGGACATAGTAACGTGTCAATTTCATATCTGTCATCGGACGATCTACTACTTGATAGTCAATAGTAGGATCATCTTCTTGGAATGTATATCCTGGAGAAACAATTTTATCCCAGGAACACTCCCCGCCACAAGATCGTATAATCAAACATATCGCTTCCCGTGGAACTTCACGCATAAGGAAAAACCGTTTGTTTTTGAAAAGCTTTTTCACGTTTTGAACTTCTATTTGCTTACTTATCGCTTGCGAAACCTGCTCGTCAATAGCCTGC ]
[-] EMBL CD160523 [ TCAGTACCAGAACTTCCAATAAACGGACTTAAATGAGGTGGGAGACTACAACCCGGTAAGTAATCTTGTGTTGGTAGTAGTCTCCCTGCATTTAAACAGTCGAAAACCCACTGTGGTTGGACATAGTAACGTGTCAATTTCATATCTGTCATCGGACGATCTACTACTTGATAGTCAATAGTAGGATCATCTTCTTGGAATGTATATCCTGGAGAAACAATTTTATCCCAGGAACACTCCCCGCCACAAGATCGTATAATCAAACATATCGCTTCCCGTGGAACTTCACGCATAAGGAAAAACCGTTTGTTTTTGAAAAGCTCTTTCACGTTTTGAACTTCTATTTGCTTACTTATCGCTTGCGAAACCTGCTCGTCAATAGCCTGCAGCTCTGTCAAATCATCAACTTCAACATCATTTAATGGCTCTGTGCGTTTTAGCGGAAAGCTGAGGGACGACATAAACTCGAAAAGACTTTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAACACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCC AGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGGTGTG ]
[-] EMBL CD202952 [ CGAAAACCCACTGTGGTTGGACATAGTAACGTGTCAATTTCATATCTGTCATCGGACGATCTACTACTTGATAGTCAATAGTAGGATCATCTTCTTGGAATGTATATCCTGGAGAAACAATTTTATCCCAGGAACACTCCCCGCCACAAGATCGTATAATCAAACATATCGCTTCCCGTGGAACTTCACGCATAAGGAAAAACCGTTTGTTTTTGAAAAGCTTTTTCACGTTTTGAACTTCTATTTGCTTACTTATCGCTTGCGAAACCTGCTCGTCAATAGCCTGCAGCTCTGTCAAATCATCAACTTCAACATCATTTAATGGCTCTGTGCGTTTTA ]
[-] EMBL CD118328 [ CGTATAATCAAACATATCGCTTCCCGTGGAACTTCACGCATAAGGAAAAACCGTTTGTTTTTGAAAAGCTTTTTCACGTTTTGAACTTCTATTTGCTTACTTATCGCTTGCGAAACCTGCTCGTTAATAGCCTGCAGCTCTGTCAAATCATCAACTTCAACATCATTTAATGGCTCTGTGCGTTTTAGCGGAAAGCTGAGGGACGACATAAACTCGAAAAGACTTTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAACACGCACAGCGAG ]
[-] EMBL CD160475 [ CTGCAGTTCTGTCAAATCATCAACTTCAACATCATTTAATGGCTCTGTGCGTTTAAGCGGAAAGCTGAGGGACGACAT AACTCGAAAAGAC TTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAACACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCCAAGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGCAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATG CCTTCCGACCTGCTTGAGTTGCCACAACAAGATTTAAAGATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCTGTCACTTATATCCCGCAAAGCATCCTGCCTCGTAGGGTATCTTTCTGTTGACGCATTTGATGAACGCGTATATGCTTGGCTTATTTATCCTTACTCGAAACTCCTTCTCTTTATCTTTTCGTTCTCGTGCTTTCTTGAGCTTTACATGGAATACCCGAAGTTTCCTAAACGTT ]
[+] EMBL CD115605 [ AGCTGAGGGACGACATAAACTCGAAAAGACTTTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAACACTCACAGCGAGTTTTGGGGGGTAAACTGGGGGGTTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCC AGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATG CCTTCCGAACTGCTTGAGTTGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAG ]
[+] EMBL CD160174 [ CATAAACTCGAAAAGACTTTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAACACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCC AGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATG CCTTCCGAACTGCTTGAGTTGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAACGAAG ]
[+] EMBL CD160000 [ CATAAACTCGAAAAGACTTTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAACACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCC AGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATG CCTTCCGAACTGCTTGAGTTGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAca ]
[+] EMBL CD160307 [ CATAAACTCGAAAAGACTTTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAACACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCC AGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATG CCTTCCGAACTGCTTGAGTTGACACAACAAGATTTAAAAATTCCACGCACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAGAAAGTTGAGGCTGTCACT ]
[+] EMBL CD160156 [ CATAAACTCGAAAAGACTTTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAACACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCC AGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATG CCTTCCGAACTGCTTGAGTTGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCGTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCT ]
[+] EMBL CD147901 [ CCATTCGGATCATGCTCAACACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCC AGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATG CCTTCCGAACTGCTTGAGTTGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCTGTCACTTATATCCCGCAAAGCATCCTGCCTCGTAGGGTATCTTTCT TTGACG ATTTGATGAA GCGTATAT CTTGGCTTATTTAT ]
[+] EMBL CD147802 [ CCATTCGGATCATGCTCAACACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCC AGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATG CCTTCCGAACTGCTTGAGTTGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCTG ]
[-] EMBL CD163142 [ CACAGCGAGTTTTGGGGGCTAAACTAGGTTATTGATTCGGT ATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCC AGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATGCCTTTTGACCTTCCGAACTGCTTGAGTTGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGA ]
[-] EMBL CD189995 [ AAGTGTAGCATCAAATTCC AGACATGTTGCTAGTATACGGTAATCAATATCAGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATG CCTTCCGAACTGCTTGAGTTGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCTGTCACTTATATCCCGCAAAGCATCCTGCCTCGTAGGGTATCTTTCT TTGACG ATTTGATGAA GCGT ]
[-] EMBL CD180311 [ AGCATCAAATTCC AGACATGTTGCTAGTATACGGTAATCAACATCAGTTGGGTTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATG CCTTCCGAACTGCTTGAGTTGCCACTACAAGATTTAAAAATTCCACACACGATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCTGTCACTTATATCCCGCAAAGCATCCTGCCTCGTAGGGTATCTTTCT TTGACG ATTTGATGAA GCGTATAT CTTGGCTTATTTATCCTTACTCGAAACTCCTTCTCTTTATC ]
[+] EMBL CD188144 [ TGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCTGTCACTTATATCCCGCAAAGCATCCTGCCTCGTAGGGTATCTTTCT TTGACG ATTTGATGAA GCGTATAT CTTGGCTTATTTATCCTTACTCGAAACTCCTTCTCTTTATCTTTTCTTTCTCGTGCTTTCTTGAGCTTTACATGGAATACCCGAAGTTTCCTAAACGTTTCTATCAAAGGCTCATGTGACAGAAAGAAAAGATAAAGAAGA]
consensusID : consensus_10886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence
[CCAGGGGCTCTTTATTTTTCATCATCTTTTAGCAACGATTAGAAGTACCAATTTAGGGGTTAAGTAAACATATGATACAGGAAGTATATCTGAGTTTTCTTTGACCTGTGAGCTCCAAGAAATTGGTAAAAATACACTTTTAAGTTTAGTATTTGTTGTGAACGCGAATCAAATCACAAGAGTAATGGTACTATAGTCAAACGAACATCAAAGTGGAAACTCGTAAATAATCGGAAAGAAAACCTTTTTCTATTTATTGAGTGGCATCTCATCAGTCAACATTTTTCACTTAGTTATGGACACACGGTTCAAGTTTGAACTTGTGACTAATTAGCTGACAGAAAAATGCTCGAACAACTAGTTTTCTGCTCAACCACGTTTAATGAAAGAAAAGGTCCAAATGTCTGATTATTTTATTTTGTTGTATAAATTATATCGAGTAATTACAGCTTTCATCCGGTTCCNATGTCAATTCGACGTCTTTTTGCTTTCACTGGCGTACTTCTTTTTCCTTTCGCTTGATAGAATGCACCATTTTCTATATACATTTTGGGTTTTTTCGGGAACATTACTTCCTCACTAACGTTCAGCATTGGCTCCTCCCTCCTTTGACATCTTAACTGTTTTGCTTAAACTCAACCAGTGTAACTTTGGGTCCCTTACTTTTGGACTTTTTAATNTAAATGCGTCCTTGGCGGAAATGTGTTAAAAAATTTGGTTTTAAGGGAAACTTGGCCCATTTGGGCCTGGGGCAAATCCTTAGGGGGGGATAAAATCAAACTTTAAACTGTTCCTGGAAAATTTTTCGCCAAATCCAAAATAAACCGGAATAAAGAA]
[+] EMBL CD073934 [CCAGGGGCTCTTTATTTTTCATCATCTTTTAGCAACGATTAGAAGTACCAATTTAGGGGTTAAGTAAACATATGATACAGGAAGTATATCTGAGTTTTCTTTGACCTGTGAGCTCCAAGAAATTGGTAAAAATACACTTTTAAGTTTAGTATTTGTTGTGAACGCGAATCAAATCACAAGAGTAATGGTACTATAGTCAAACGAACATCAAAGTGGAAACTCGTAAATAATCGGAAAGAAAACCTTTTTCTATTTATTGAGTGGCATCTCATCAGTCAACATTTTTCACTTAGTTATGGACACACGGTTCAAGTTTGAACTTGTGACTAATTAGCTGACAGAAAAATGCTCGAACAACTAGTTTTCTGCTCAACCACGTTTAATGAAAGAAAAGGTCCAAATGTCTGATTATTTTATTTTGTTGTATAAATTATATCGAGTAATTACAGCTTTCATCCGGTTCCNATGTCAATTCGACGTCTTTTTGCTTTCACTGGCGTACTTCTTTTTCCTTTCGCTTGATAGAATGCACCATTTTCTATATACATTTTGGGTTTTTTCGGGAACATTACTTCCTCACTAACGTTCAGCATTGGCTCCTCCCTCCTTTGACATCTTAACTGTTTTGCTTAAACTCAACCAGTGTAACTTTGGGTCCCTTACTTTTGGACTTTTTAATNTAAATGCGTCCTTGGCGGAAATGTGTTAAAAAATTTGGTTTTAAGGGAAACTTGGCCCATTTGGGCCTGGGGCAAATCCTTAGGGGGGGATAAAATCAAACTTTAAACTGTTCCTGGAAAATTTTTCGCCAAATCCAAAATAAACCGGAATAAAGAA]
consensusID : consensus_10886#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[GTTGGGGTGTGAGTAACAGAAGCATGGGGCACAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATGCCTTCCGAACTGCTTGAGTTGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCTGTCACTTATATCCCGCAAAGCATCCTGCCTCGTAGGGTATCTTTCTTTGACGATTTGATGAAGCGTATATCTTGGCTTATTTATCCTTACTCGAAACTCCTTCTCTTTATCTTTTCTTTCTCGTGCTTTCTTGAGCTTTACATGGAATACCCGAAGTTTCCTAAACGTTTCTATCAAAGGCTCATGTGACAGAAACGCTATATCTTTCGCATTGTAATAAATCCTAGGTTGACTGTTTCCCTTTCCAACCTTTT]
[-] EMBL CD147629 [GTTGGGGTGTGAGTAACAGAAGCATGGGGCACAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATGCCTTCCGAACTGCTTGAGTTGCCACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCTGTCACTTATATCCCGCAAAGCATCCTGCCTCGTAGGGTATCTTTCTTTGACGATTTGATGAAGCGTATATCTTGGCTTATTTATCCTTACTCGAAACTCCTTCTCTTTATCTTTTCTTTCTCGTGCTTTCTTGAGCTTTACATGGAATACCCGAAGTTTCCTAAACGTTTCTATCAAAGGCTCATGTGACAGAAACGCTATATCTTTCGCATTGTAATAAATCCTAGGTTGACTGTTTCCCTTTCCAACCTTTT]
consensusID : consensus_10886#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence
[GCATTTGCTTCCTCCTTCTCTTTGTACATCTTAACTGTTTTGCTTTCGGCTCGACCAGGTGTTACTTGGGGTTCCTTACCTGCAGCTCTGTCAAATCATCAACTTCAACATCATTTAATGGCTCTGTGCGTTTTAGCGGAAAGCTGAGGGACGACATAAACTCGAAAAGACTTTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAACACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCCAGACATGTTGCTAGTATACGGTAATCAACA]
[+] EMBL CD155954 [GCATTTGCTTCCTCCTTCTCTTTGTACATCTTAACTGTTTTGCTTTCGGCTCGACCAGGTGTTACTTGGGGTTCCTTACCTGCAGCTCTGTCAAATCATCAACTTCAACATCATTTAATGGCTCTGTGCGTTTTAGCGGAAAGCTGAGGGACGACATAAACTCGAAAAGACTTTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAACACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAAAGACCCAATAAGTGTAGCATCAAATTCCAGACATGTTGCTAGTATACGGTAATCAACA]
consensusID : consensus_10886#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 132 fasta sequence
[TTATTTTATTTAGTAGTATAAATTATATCGAGTAATTACAGCTTTGCATCCGGTTGNCCAAGTCAATTCGACGTCTTTTAGCTTCCAACNGGCGTACTTCTTTTTCCTTACGCTAGATAGAAAGCACCACGA]
[-] EMBL SM7771 [TTATTTTATTTAGTAGTATAAATTATATCGAGTAATTACAGCTTTGCATCCGGTTGNCCAAGTCAATTCGACGTCTTTTAGCTTCCAACNGGCGTACTTCTTTTTCCTTACGCTAGATAGAAAGCACCACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10886#1 CCAGGGGCTCTTTATTTTTCATCATCTTTTAGCAACGATTAGAAGTACCAATTTAGGGGT 60
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 ----CAAGGTTTTTTATTTTTACAACTCTTAACCCCGTTTAAAAGTCCCATTTTGGGGTT 56
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 TAAGTAAACATATGATACAGGAAGTATATCTGAGTTTTCTTTGACCTGTGAGCTCCAAGA 120
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 AAGGTACCCATTTT-TCCGGGAGTTAATTTTGGTTTTTCTTTAACGTTTAAGTCCCAAGA 115
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 AATTGGTAAAAATACACTTTTAAGTTTAGTATTTGTTGTGAA-CGCGAATCAAATCACAA 179
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 AATGGGTAAAAAACCCCTTTTAAGTTTAGTATTTGTTGTGAAACGGAAATCAATTCCCAA 175
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 GAGTAATGGTACTATAGTCAAACG-AACATCAAAGTGGAAAC-TCGTAAATAATCGGAAA 237
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 GAGTAATGGTCCTATAGTCAAACGGANCATCAAAGTGAAAACCTCGTAAATAATCGAAAA 235
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 GAAAACCTTTTTCTATTTATTGAGTGGCATCTCATCAGTCAACATTTTTCACTTAGTTAT 297
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 GANAACCTTTTTCTATTTATTGAGTGGCATCTCATCAGTCAACATTTTTCACTTAGTTAT 295
consensus_10886#2 -----------------------------------------------GTTGGGGTGTGAG 13
consensus_10886#1 GGACACACGGTTCAAGTTTGAACTTGTGACTAATTAGCTGACAGAAAAATGCTCGAACAA 357
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 GGACACACGGTTCAAGTTTGAACTTGTGACTAATTAGCTGACAGAAAAATGCTCGAACAA 355
consensus_10886#2 TAACAGAAGCATGGGGCACAATCCAGACAACTGGAATTCCATCGATTTCAGCTTGAACAT 73
consensus_10886#1 CTAGTTTTCTGCTCAACCACGTTTAATGAAAGAAAAGGTCCAAATGTCT-GATTATTTTA 416
consensus_10886#4 ----------------------------------------------------TTATTTTA 8
consensus_10886#3 ------------------GCATTTGCTTCCTCCTTCTCTTTGTACATCTTAACTGTTTTG 42
consensus_10886#0 CTAGTTTTCTGCTCAACCACGTTTAATGAAAGAAAAGGTCCAAATGTCT-GATTATTTTA 414
consensus_10886#2 AAAATCCTTTTAT-GCTAATAAATGCCTTCCGAACTGCTTGAGTTGCCACAACAAGATTT 132
**
consensus_10886#1 TTTTGTTGTATAAATTATAT-CGAGTAATTACAGCTTT-CATCCGGTT-CCNATGTCAAT 473
consensus_10886#4 TTTAGTAGTATAAATTATAT-CGAGTAATTACAGCTTTGCATCCGGTTGNCCAAGTCAAT 67
consensus_10886#3 CTT--TCGGCTCGACCAGGT---GTTACTTGGGGTTCCTTACCTG--CAGCTCTGTCAAA 95
consensus_10886#0 TTTTGTTGTATAAATTATAT-CGAGTAATTACAGCTTT-CATCCGGTT-CCCATGTCAAT 471
consensus_10886#2 AAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTGGAATTGAGTAAGC 192
* * * * ** * * * * ** *
consensus_10886#1 TCGACGTCTTT--TTGCTTTCA-CTGGC-GTACTTCTTTTTCCTTTCGCTTGATAGAATG 529
consensus_10886#4 TCGACGTCTTT--TAGCTTCCAACNGGC-GTACTTCTTTTTCCTTACGCTAGATAGAAAG 124
consensus_10886#3 TCATCAACTTCAACATCATTTAATGGCT-CTGTGCGTTTTAGCGGAAAGCTGAGGGACGA 154
consensus_10886#0 TCGACGTCTTT--TTGCTTCCAACTGGC-GTACTTCTTTTTCCTTTCGCTTGATAGAATG 528
consensus_10886#2 TTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCTGTCACTTATATCCCGCAAAGCA 252
* * * * * * * * *
consensus_10886#1 CACCATTTTCT-ATATACATTTTGGG-TTTTTTCGGGAACATTACTTCCT--CACTAACG 585
consensus_10886#4 CACCACGA---------------------------------------------------- 132
consensus_10886#3 CATAAACTCGA-AAAGACTTTCTTTT-TGGCCACAGTAGTATCCATTC----GGATCATG 208
consensus_10886#0 CACCATTTTCTTATATACATTTTTGTGTTTTTTCGGCAACATTAACTCCCTCAACTTACG 588
consensus_10886#2 TCCTGCCTCGTAGGGTATCTTTCTTTGACGATTTGATGAAGCGTATATCTTGGCTTATTT 312
consensus_10886#1 TTCAGCATTGGCTCCTCCCT---CCTTTGACATCTTAACTGTTTTGCTT--AAACTCAAC 640
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 CTCAACACGCACAGCGAG------TTTTGGGGGGTAAACTAGGTTATTG--ATTCGGTAC 260
consensus_10886#0 TTCAGCATTTGCTTCCTCCTTCTCTTTGTACATCTTAACTGTTTTGCTTTCAGCTCGACC 648
consensus_10886#2 ATCCTTACTCGAAACTCCTT---CTCTTTATCTTTTCTTTCTCGTGCTTTCTTGAGCTTT 369
consensus_10886#1 CAGTGTAACTTTGGGTCCCTTACTTTTGGAC---TTTTTAATNT-AAATGCGTCCTTGGC 696
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 AAATGACACATCAAAGACCCAATAAGTGTAG---CATCAAATTCCAGACATGTTGCTAGT 317
consensus_10886#0 AGGTGTTACTTTGGGTTCCTTACCTTTTGAAACTTTCTTAAGTTTACATCGCTCCTTTGT 708
consensus_10886#2 ACATGGAATACCCGAAGTTTCCTAAACGTTTCTATCAAAGGCTCATGTGACAGAAACGCT 429
consensus_10886#1 GGAAA-----TGTGTTAAAAAATTTGGTTTTAAGGGAAACTTGGCCCATTTGGGCCTGGG 751
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ATACG-----GTAATCAACA---------------------------------------- 332
consensus_10886#0 CTGAACATTTGTTTTTAAATCATTTTGCTTTTTAGTGGAAGAATCATCCAAAAGGTCATT 768
consensus_10886#2 ATATCTTTCGCATTGTAATAAATCCTAGGTTGACTGTTTCCCTTTCCAACCTTTT----- 484
consensus_10886#1 GCAAATCCTTAGGGGGGGATAAAATCAAACTTTAAACTGTTCCTGGAAAATTTTTCGCCA 811
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 ATCCACTTCTGATTGACTCTCAATAGTGCCTTCAGACTGGGCTTGGACTCTAGCTCCACG 828
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 AATCCAAAATAAACCGGAATAAAGAA---------------------------------- 837
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 GATTTCAGCCAGACTCACCAAACCAGCGAGGTAATCAGCCTCTGGTGGACGATAGATGGA 888
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 TGCACCATCCCCAAATCCAGGAGCGACACCGACAAGCCCACCACGGTTTGAAAGTGACAT 948
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 AACTGCTGTGTCTAAAAGTTCATCAGTACCAGAACTTCCAATAAACGGACTTAAATGAGG 1008
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 TGGGAGACTACAACCCGGTAAGTAATCTTGTGTTGGTAGTAGTCTCCCTGCATTTAAACA 1068
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 GTCGAAAACCCACTGTGGTTGGACATAGTAACGTGTCAATTTCATATCTGTCATCGGACG 1128
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 ATCTACTACTTGATAGTCAATAGTAGGATCATCTTCTTGGAATGTATATCCTGGAGAAAC 1188
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 AATTTTATCCCAGGAACACTCCCCGCCACAAGATCGTATAATCAAACATATCGCTTCCCG 1248
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 TGGAACTTCACGCATAAGGAAAAACCGTTTGTTTTTGAAAAGCTTTTTCACGTTTTGAAC 1308
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 TTCTATTTGCTTACTTATCGCTTGCGAAACCTGCTCGTCAATAGCCTGCAGCTCTGTCAA 1368
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 ATCATCAACTTCAACATCATTTAATGGCTCTGTGCGTTTTAGCGGAAAGCTGAGGGACGA 1428
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 CATAAACTCGAAAAGACTTTCTTTTTGGCCACAGTAGTATCCATTCGGATCATGCTCAAC 1488
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 ACGCACAGCGAGTTTTGGGGGGTAAACTAGGTTATTGATTCGGTACAAATGACACATCAA 1548
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 AGACCCAATAAGTGTAGCATCAAATTCCAGACATGTTGCTAGTATACGGTAATCAACATC 1608
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 AGTTGGGGTGTGAGTAACAGAAGCATGGGGCATAATCCAGACAACTGGAATTCCATCGAT 1668
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 TTCAGCTTGAACATAAAATCCTTTTATGCTAATAAATGCCTTCCGAACTGCTTGAGTTGC 1728
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 CACAACAAGATTTAAAAATTCCACACACAATCTTCGACTAATAGAGATTAAAGAAGGGTG 1788
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 GAATTGAGTAAGCTTAGGAAGCTTCTCGAAGAGAAACAGCAAGTTGAGGCTGTCACTTAT 1848
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 ATCCCGCAAAGCATCCTGCCTCGTAGGGTATCTTTCTTTGACGATTTGATGAAGCGTATA 1908
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 TCTTGGCTTATTTATCCTTACTCGAAACTCCTTCTCTTTATCTTTTCGTTCTCGTGCTTT 1968
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ------------------------------------------------------------
consensus_10886#4 ------------------------------------------------------------
consensus_10886#3 ------------------------------------------------------------
consensus_10886#0 CTTGAGCTTTACATGGAATACCCGAAGTTTCCTAAACGTTTCTATCAAAGGCTCATGTGA 2028
consensus_10886#2 ------------------------------------------------------------
consensus_10886#1 ----------------------
consensus_10886#4 ----------------------
consensus_10886#3 ----------------------
consensus_10886#0 CAGAAAGAAAAGATAAAGAAGA 2050
consensus_10886#2 ----------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||