cluster # 1089

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Schistosoma mansoni
cluster # 1089 cluster # 1089 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1089#0 length = 335 sequences # 1

consensus_1089#1 length = 156 sequences # 1

consensusID : consensus_1089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [TACGTGAGGATGTGATAAACAAGATGAGGCAGACTTTATAGCTAAATGATCTATGTTTACAGCTTGAGGAGCATCAGGAACTAAGAATTTATCGAATATCTCATTTGCTTTCTTTTTCACATTCCCGGTTTCGAAGACATGACGCCATGTACGGACTGAGAGCAGAAAATCAAGATTTTCACTGCTGAATTCTGTTATCAGAAGTTTCCTAAATTCATTACAAGCAACGGGGTCATTTAGAAGGTTATCAAAATCTTCCGCCCATGATATTGGATTTGATGACGCAGNTGACGGATTATTAGGTGGCTCTATATTTTCAGTATCTTCATTTTCAA]

[+] EMBL CD195969             [TACGTGAGGATGTGATAAACAAGATGAGGCAGACTTTATAGCTAAATGATCTATGTTTACAGCTTGAGGAGCATCAGGAACTAAGAATTTATCGAATATCTCATTTGCTTTCTTTTTCACATTCCCGGTTTCGAAGACATGACGCCATGTACGGACTGAGAGCAGAAAATCAAGATTTTCACTGCTGAATTCTGTTATCAGAAGTTTCCTAAATTCATTACAAGCAACGGGGTCATTTAGAAGGTTATCAAAATCTTCCGCCCATGATATTGGATTTGATGACGCAGNTGACGGATTATTAGGTGGCTCTATATTTTCAGTATCTTCATTTTCAA]




>consensus_1089#0
TACGTGAGGATGTGATAAACAAGATGAGGCAGACTTTATAGCTAAATGATCTATGTTTAC
AGCTTGAGGAGCATCAGGAACTAAGAATTTATCGAATATCTCATTTGCTTTCTTTTTCAC
ATTCCCGGTTTCGAAGACATGACGCCATGTACGGACTGAGAGCAGAAAATCAAGATTTTC
ACTGCTGAATTCTGTTATCAGAAGTTTCCTAAATTCATTACAAGCAACGGGGTCATTTAG
AAGGTTATCAAAATCTTCCGCCCATGATATTGGATTTGATGACGCAGNTGACGGATTATT
AGGTGGCTCTATATTTTCAGTATCTTCATTTTCAA

consensusID : consensus_1089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 156
fasta sequence

                              [TTCAGTGGTTTGTCTTTAGAATACGTAGTTAAGCTTCTTTGAATTGACTAAATATTTTTTGACCTCAACTTGCTGCTACTATCTTTTCTTTCAGAAATTTCTGATAACAGAATTCAGCAGCGAAAATCTTGATTTTCTGCTCTCAGTCCGTACATG]

[+] EMBL CD187818             [TTCAGTGGTTTGTCTTTAGAATACGTAGTTAAGCTTCTTTGAATTGACTAAATATTTTTTGACCTCAACTTGCTGCTACTATCTTTTCTTTCAGAAATTTCTGATAACAGAATTCAGCAGCGAAAATCTTGATTTTCTGCTCTCAGTCCGTACATG]




>consensus_1089#1
TTCAGTGGTTTGTCTTTAGAATACGTAGTTAAGCTTCTTTGAATTGACTAAATATTTTTT
GACCTCAACTTGCTGCTACTATCTTTTCTTTCAGAAATTTCTGATAACAGAATTCAGCAG
CGAAAATCTTGATTTTCTGCTCTCAGTCCGTACATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1089#0      TACGTGAGGATGTGATAAACAAGATGAGGCAGACTTTATAGCTAAATGATCTATGTTTAC 60
consensus_1089#1      -----------------------------------------TTCAGTGGTTTGTCTTTAG 19
                                                                * * ** * * * **** 

consensus_1089#0      AGCTTGAGGAGCATCAGGAACTAAGAATTTATCGAATATCTCAT----TTGCTTTCTTTT 116
consensus_1089#1      AATACGTAG---TTAAGCTTCTTTGAATTGACTAAATATTTTTTGACCTCAACTTGCTGC 76
                      *    *  *    * **   **  ***** *   ***** *  *    *    **  *  

consensus_1089#0      TCACATTCCCGGTTTCGAAGACATGACGCCATGTACGGACTGAGAGCAGAAAATCAAGAT 176
consensus_1089#1      TACTATCTTTTCTTTCAGAAATTT---CTGATAACAGAATTCAGCAGCGAAAATCTTGAT 133
                      *   **      ****  * *  *      **    * * * **    *******  ***

consensus_1089#0      TTTCACTGCTGAATTCTGTTATCAGAAGTTTCCTAAATTCATTACAAGCAACGGGGTCAT 236
consensus_1089#1      TTTCTGCTCTCAGTCCGTACATG------------------------------------- 156
                      ****    ** * * *    **                                      

consensus_1089#0      TTAGAAGGTTATCAAAATCTTCCGCCCATGATATTGGATTTGATGACGCAGNTGACGGAT 296
consensus_1089#1      ------------------------------------------------------------
                                                                                  

consensus_1089#0      TATTAGGTGGCTCTATATTTTCAGTATCTTCATTTTCAA 335
consensus_1089#1      ---------------------------------------