|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1267 fasta sequence
[ACGCAGTACGGTAATGCAGCTGCATGGCATGTTGTTTTTTTTTTTTTTTTTTTTTTTTTGACACATGATAGAAAATTTATTTCCACAATCAGTTTATACAGGTGAAAAAATTAGGCAAAAAATGATATAAAGAACGATAGGATTAAAAAAGACAGACAAATGTGCATATATGTTCACTATTTTATAGTCATATGAAAAGGGAGAATAGGGGGGAATCGTTGATAGGTTGGTATGAGAGAAACAATTTAATTAAA-AT-CATTTTGAA-TCCGGTTTTATATAAATGAGCTTAGAAGCCCCCATCTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTATTACTTGCAATTCAGTTGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGGCGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAGCTGATTGTGAACCTAATTGTTTTGCATCCCATAAATGTTCTTCTTCTATACGGCAGATAAGAAGACCTTCAGGACTGATACGTGGTTGGAAATTGGCTAATATTTCATTCAAAGCTCTAGATAGGCTAGTAAACGCGGGATCTCCAAATAAGTTTACAGTACGACCATTTTCGTTGAGATACTCTTGAATACCTAGACACAAATAGAAAATTGAATCAGCTACATAACATTCATTATTTGGTTTGCGAACTTCACGAACAAATTGACTTAGTGCGATATTAAGATCGGTATCACTCATATTTAATAAATCAGCATATAAATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCCAT-AGAGAATTTCAAATGGTAATTAGCATCAGATGTAAGTATGGGTGTAAGAGTTTGACGGGACCGCTTAGTTGGGGGGTGCGGCGGAAGCGATTGATCTATCTCTCTT-CACTACTGTATTGACTCATTACCGAT]
[+] EMBL AI975907 [ACGCAGTACGGTAATGCAGCTGCATGGCATGTTGTTTTTTTTTTTTTTTTTTTTTTTTTGACACATGATAGAAAATTTATTTCCACAATCAGTTTATACAGGTGAAAAAATTAGGCAAAAAATGATATAAAGAACGATAGGATTAAAAAAGACAGACAAATGTGCATATATGTTCACTATTTTATAGTCATATGAAAAGGGAGAATAGGGGGGAATCGTTGATAGGTTGGTATGAGAGAAACAATTTAATTAAAGAT CATTTTGAATTCCGGTTTTATATAAATGAGCTTAGAAGCCCCCATCTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTATTACTTGCAATTTAGTTGGTCAAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTATTTCTG ]
[+] EMBL CD144903 [ TATTTTATAGTCATATGAAAAGGGAGAATAGGGGGGAATCGTTGATAGGTTGGTATGAGAGAAACAATTTAATCAAA ATACATATAGAA TACGGATATATATAAATGAGCTTAGAAGCCCCCATCTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTATTACTTGCAATTCAGTTGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGGCGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACAT ]
[+] EMBL CD118610 [ AAATGAGCTTAGAAGCCCCCATCTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTATTACTTGCAATTCAGTCGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGGCGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCA ]
[-] EMBL CD118630 [ AATGAGCTTAGAAGCCCCCATCTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTATTACTTGCAATTCAGTTGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGGCGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAG ]
[+] EMBL CD130729 [ gGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGAATTACCTGCAATTCAGTTGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGGCGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAGCTGATTGTGAACCTAATTGTTTT ]
[+] EMBL CD154313 [ TGTTGAGGATTCGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAGCTGATTGTGAACCTAATTGTTTTGCATCCCATAAATGTTCTTCTTCTATACGGCAGATAAGAAGACCTTCAGGACTGATACGTGGTTGGAAATTGGCTAATATTTCATTCAAAGCTCTAGATAGGCTAGTAAACGCGGGATCTCCAAATAAGTTTACAGTACGACCATTTTCGTTGAGATACTCTTGAATACCTAGACACAAATAGAAAATTGAATCAGCTACATAACATTCATTATTTGGTTTGCGAACTTCACGAACAAATTGACTTAGTGCGATATTAAGATCGGTATCACTCATATTTAATANATCAGCATATANATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCCAT AGAGAATTTCANATGGTANTTAGCATCAGATGTAAGTATGGGTGTAAGAGTTTGACGGGACCGCTTAGTTGGGGGGTGCGGCGGAAGCGATTGATCTATCTCTCTT CACTACT ]
[+] EMBL CD154615 [ TGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAGCTGATTGTGAACCTAATTGTTTTGCTTCCCATAAATGTTCTTCTTCTATACGACAGATAAGAAGACCTTCAGGACTGATACGTGGTTGGAAATTGGCTAATATTTCATTCAAAGCTCTAGATAGGCTAGTAAACGCGGGATCTCCAAATAAGTTTACAGTACGACCATTTTCGTTGAGATACTCTTGAATACCTAGACACAAATAGAAAATTGAATCAGCTACATAACATTCATTATTTGGTATGCGAACTTCACGAACAAATTGACTTAGTGCGGTATTAAGATCGGTATCACTCATATTTAATAAATCAGCATATAAATGTGAATATTGNTGCATTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGCTGATTTTTGCTG ]
[-] EMBL CD145657 [ TGCGATATTAAGATCGGTATCACTCATATTTAATAAATCAGCATATAAATGTGGATATTGTTGCCTTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGATGATTTTTGCTGTGCCCAGTGACGCCACGCATTGAT CCCATAAGAGAATTTCAAATGGTAATTAGCATCAGATGTGAGTATGGGTGTAAGAGTTTGACGGGGCCGCTTA ]
[+] EMBL CD147435 [ CCCATAAGAGAATTTCAAATGGTAATTAGCATCAGATGTTAGTATGGGTGTAAGAGTTTGACGGGACCGCTTAGTTGGGGGTGGCGGTGGAAGCGATTGATCTATCTCTCTTCCACTACTGTATTGACTCATTACCGAT]
consensusID : consensus_10891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1206 fasta sequence
[GCATTTAGGTGTAAGTATGGGTGTAAGAGTTTGACGGGACCGCTTAGTTGGGGGTGGCGGCGGAAGCGATTGATCTATCCCTCTTCCACTACTGGAGTGACTCATTACCGATGTCATCGGTTGATGATGGTG-AAATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT-TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTGGAACTGGGCATGGTAACGGATAGGGGATTGCGTATGGCACTGGTCTTGCGTATAAACATACTGGAAAGGGCACATAGATTGGAACCGGGATAGGTATCGGTAGTACAAGTGGTA-TTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTTGGGTGCCATATTCGACAAAAGCGATGTCATCAGTTGACGTCTCAGCACAACTAAAACTTGGTTGGTCAGTTTTCATTAACATTTGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGT-TTTGTATCAACAGTCTGGGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGCAACTGGGGCCGCTGGTTGTAAAATGACT-TGTTGTTCAATGCCCAATTGTCGAACCATGTCAATTGGAACAACAGGAAACTGACCTCTCAACGGCCTTCGACCTCGAGGGCGACCTCGACCACTAGTACCAGCTATTGCAGCGGCTAAACGATAACCAGAGTCTCGGTCCAC]
[-] EMBL CD116948 [GCATTTAGGTGTAAGTATGGGTGTAAGAGTTTGACGGGACCGCTTAGTTGGGGGTGGCGGCGGAAGCGATTGATCTATCCCTCTTCCACTACTGGAGTGACTCATTACCGATGTCATCGGTTGATGATGGTG AAATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTGGAACTGGGCATGGTAACGGATAGGGGATTGCGTATGGCACTGGTCTTGCGTATAAACATACTGGA ]
[-] EMBL AI067816 [ ACTGGAGTGACTCATTACCGATGTCATCGGTTGATGATGGTG AAATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTGGAACTG ]
[-] EMBL AI068130 [ ATTACCGATGTCATCGGTTGATGATGGTG AAATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTG ]
[-] EMBL AI067675 [ tGTGAAAATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTG ]
[-] EMBL AI067308 [ AATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTG ]
[+] EMBL CD197273 [ ATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTATCGGAAGAATCACTCAGTGTTTTAGGAGTGATATAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGa ]
[-] EMBL CD127372 [ GGATTGCGTATGGCACTGGTCTTGCGTATAAACATACTGGAAAGGGCACATAGATTGGAACCGGGATAGGTATCGGTAGTACAAGTGGTATTTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTTGGGTGCCATATTCGACAAAAGCGATGTCATCAGTTGACGTCTCAGCACAACTAAAACTAGGTTGGTCAGTTTTCATTAACATTTGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGT TTTGTATCAACAGTCTGGGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGCAACTGGGGCCGCTGGTTGTAAAATGACT TGTTGTTCAATGCCCAATTGTCGAACCATGTCAATTGGAACAACAGGAAACTGACCTCTCAACGGCCTTCGACCTCGAGGGCGACCTCGACCAATAGTACCAGCTATTGCAGCGGCTAAACGATAACCAGAGTCTCGGTCCAC]
[-] EMBL CD094965 [ CTGGAAAGGGCACATAGATTGGAACCGGGATAGGTATCGGTAGTACAAGTGGTA TTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTTGGGTGCCATATTCGACAAAAGCGATGTCATCAGTTGACGTCTCAGCACAACTAAAACTTGGTTGGTCAGTTTTCATTAACATTTGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGT TTTGTATCAACAGTCTGGGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCGCAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGC ]
[-] EMBL CD095022 [ CTGGAAAGGGCACATAGATTGGAACCGGGATAGGTATCGGTAGTACAAGTGGTA TTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTTGGGTGCCATATTCGACAAAAGCGATGTCATCAGTTGACGTCTCAGCACAACTAAAACTTGGTTGGTCAGTTTTCATTAACATTTGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGT TTTGTATCAACAGTCT GGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGC ]
[-] EMBL CD127895 [ CAAGTGGTA TTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTTGGGTGCCATATTCGACAAAAGCGATGTCATCAGTTGACGTCTCAGCACAAATAAAGCTTGGTTGGTCAGTTTTCATTAACATTTGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAAGTGGT TTTGTATCAACAGTCTGGGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGCAACTGGGGCCGTTGGTTGTAAAATGAATATGTTGTTCAATGCCCAATTGTCGAACCATGTCAATTGGAACAACAGGAAACTGACCTCTCAACGGCCTTCGACCTCGAGGGCGACCTCGACCACTAGTACCAGCTATTGCAGCGGCTAAACGAT ]
[+] EMBL CD068097 [ TGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTACAAGTGGTATTAGTATCAACAGTCTGGGTTTGCATTTCGA ]
[-] EMBL CD132415 [ ACAGCAACACCATGTTGGGATAAATTCTCGTATATTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGCAACTGGGGCCGCTGGTTGTAAAATGACT TGTTGTTCAATGCCCAATTGTCGAACCATGTCAATTGGAACAACAGGAAACTGACCTCTCAACGGCCTTCGACCTCGAGGGCGACCTCGACCACTAGTACCAGCTATTGCAGCGGCT ]
consensusID : consensus_10891#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 452 fasta sequence
[ATTGTTGTGTGGCAGTTGACTCGTGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTCTTAGGAGTGATATTAAGATCGGTATCACTCATATTTAATAAATCAGCATATAAATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCATAAGAGAATTT]
[+] EMBL CD197598 [ATTGTTGTGTGGCAGTTGACTCGTGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTCTTAGGAGTGATATTAAGATCGGTATCACTCATATTTAATAAATCAGCATATAAATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCATAAGAGAATTT]
[+] EMBL BG932599 [ gAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCT ]
consensusID : consensus_10891#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[ATTGGGCCGGCCCGGGCTGGTTATCGGTAGTACAAGTGGTATTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTGGGGTGCCATATTCGACAAAAGCGATGTCTTCAGTTGACGTCTCAGCACAACTAAAACTGGGTTGGCCAGTTTTCATTAACATTGAGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGTTTTGTATCAACAGTCTGGGTTTGCATTTCAATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGT]
[+] EMBL CD200789 [ATTGGGCCGGCCCGGGCTGGTTATCGGTAGTACAAGTGGTATTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTGGGGTGCCATATTCGACAAAAGCGATGTCTTCAGTTGACGTCTCAGCACAACTAAAACTGGGTTGGCCAGTTTTCATTAACATTGAGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGTTTTGTATCAACAGTCTGGGTTTGCATTTCAATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10891#1 ------------------------------------------------------------
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 ACGCAGTACGGTAATGCAGCTGCATGGCATGTTGTTTTTTTTTTTTTTTTTTTTTTTTTG 60
consensus_10891#1 -----------------------------------GCATTTAGGTGTAAGTATGGGTGTA 25
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 ACACATGATAGAAAATTTATTTCCACAATCAGTTTATACAGGTGAAAAAATTAGGCAAAA 120
consensus_10891#1 AGAGTTTGACGGGACCGCTTAGTTGGGGGTGGCGGCGGAAGCGATTGATCTATCCCTCTT 85
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 AATGATATAAAGAACGATAGGATTAAAAAAGACAGACAAATGTGCATATATGTTCACTAT 180
consensus_10891#1 CCACTACTGGAGTGACTCATTACCGATGTCATCGGTTGATGATGGTGAAATGGTGGATTA 145
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 TTTATAGTCATATGAAAAGGGAGAATAGGGGGGAATCGTTGATAGGTTGGTATGAGAGAA 240
consensus_10891#1 TGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGAC 205
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 ACAATTTAATTAAAATCATTTTGAATCCGGTTTTATATAAATGAGCTTAGAAGCCCCCAT 300
consensus_10891#1 TCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTA 265
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 CTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTA 360
consensus_10891#1 GGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAA 325
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 TTACTTGCAATTCAGTTGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGG 420
consensus_10891#1 TCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTA 385
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 GGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGG 480
consensus_10891#1 TCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTT 445
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 CGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTA 540
consensus_10891#1 TTAGGAGTGATTAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTA 505
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 AACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGA 600
consensus_10891#1 GCATCAAAGACAAGTGGAATTGGAACTGGGCATGGTAACGGATAGGGGATTGCGTATGGC 565
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 GAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAA 660
consensus_10891#1 ACTGGTCTTGCGTATAAACATACTGGAAAGGGCACATAG-ATTGGAACCGGGAT-AGGTA 623
consensus_10891#3 -----------------------------------ATTG-GGCCGGCCCGGGCT-GGTTA 23
consensus_10891#2 ---------------------------ATTGTTGTGTGGCAGTTGACTCGTGAA-GTCCA 32
consensus_10891#0 GTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAGCTG 720
* *
consensus_10891#1 TCGGTAGTACAAGTGGTATTTTTTTCAATTCATCTTCATCGGTTA-A-ATCTGTTTGGGT 681
consensus_10891#3 TCGGTAGTACAAGTGGTATTTTTTTCAATTCATCTTCATCGGTTA-A-ATCTGTTGGGGT 81
consensus_10891#2 TGAGTCTGACGA-TGATGACTCTTCTGGGGCA----GGACGTTTA-AGATTAGATACATT 86
consensus_10891#0 ATTGTGAACCTAATTGTTTTGCATCCCATAAATGTTCTTCTTCTATACGGCAGATAAGAA 780
** * * * * * * * ** * * *
consensus_10891#1 GCCATATTCGACAAAAGCGATGTCAT-CAGTTGACGTCTCAGCACAACTAAAACTTGGTT 740
consensus_10891#3 GCCATATTCGACAAAAGCGATGTCTT-CAGTTGACGTCTCAGCACAACTAAAACTGGGTT 140
consensus_10891#2 CCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTC 146
consensus_10891#0 GACCTTCAGGACTGATACGTGGTTGGAAATTGGCTAATATTTCATTCAAAGCTCTAGATA 840
* * * * * ** *
consensus_10891#1 GGTCAGTTTTCATTA-ACATTT-GATCATCTTCAATTTCACCTACAGGCACCATATCATC 798
consensus_10891#3 GGCCAGTTTTCATTA-ACATTGAGATCATCTTCAATTTCACCTACAGGCACCATATCATC 199
consensus_10891#2 ATTTGATATTGATGT-ACATGG--ATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACA 203
consensus_10891#0 GGCTAGTAAACGCGGGATCTCCAAATAAGTTTACAGTACGACCATTTTCGTTGAGATACT 900
* * * ** * * *
consensus_10891#1 ATC------GTCGTCGTCATCGTCATCATCACTTTCAACTGGTTTTGTATCA-ACAGT-C 850
consensus_10891#3 ATC------GTCGTCGTCATCGTCATCATCACTTTCAACTGGTTTTGTATCA-ACAGT-C 251
consensus_10891#2 AACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACA-C 262
consensus_10891#0 CTT------GAATACCTAGACACAAATAGAAAATTGAATCAGCTACATAACATTCATTAT 954
* * * * * * ** *
consensus_10891#1 TGGGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTAC--TTGAT-TCTGTT 907
consensus_10891#3 TGGGTTTGCATTTCAATCCCAAGAGATGTTTTATCATTTTTATTAC--TTGAT-TCTGTT 308
consensus_10891#2 TGAATTTA-ACGGAAGAATCAATCAGTGTCTTAGGAGTGATATTAAGATCGGTATCACTC 321
consensus_10891#0 TTGGTTTGCGAACTTCACGAACAAATTGACTTAGTG-CGATATTAAGATCGGTATCACTC 1013
* *** * ** *** ***** * * * ** *
consensus_10891#1 ATAGTTGGAAAATTATC-------TGTTTGCACAGCAACACCAT-GTTGGGATAAATTCT 959
consensus_10891#3 ATAGTTGGAAAATTATC-------TGTTTGCACAGCAACACCAT-GTTGGGATAAATTCT 360
consensus_10891#2 ATATTTAATAAATCAGCATATAAATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTA 381
consensus_10891#0 ATATTTAATAAATCAGCATATAAATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTA 1073
*** ** **** * * *** * * ** * ** ** **
consensus_10891#1 CGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAG 1019
consensus_10891#3 CGTATGTTGTTGCATTCGCTTGAGT----------------------------------- 385
consensus_10891#2 GGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCA 441
consensus_10891#0 GGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCC 1133
* *** * ** *** *
consensus_10891#1 CTTTGTTGCGCATGGCAACTGGGGCCGCTGGTTGTAAAATGACTTGTTGTTCAATGCCCA 1079
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 TAAGAGAATTT------------------------------------------------- 452
consensus_10891#0 ATAGAGAATTTCAAATGGTAATTAGCATCAGATGTAAGTATGGGTGTAAGAGTTTGACGG 1193
consensus_10891#1 ATTGTCGAACCATGTCAATTGGAACAACAGGAAACTGACCTCTCAACGGCCTTCGACCTC 1139
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 GACCGCTTAGTTGGGGGGTGCGGCGGAAGCGATTGATCTATCTCTCTTCACTACTGTATT 1253
consensus_10891#1 GAGGGCGACCTCGACCACTAGTACCAGCTATTGCAGCGGCTAAACGATAACCAGAGTCTC 1199
consensus_10891#3 ------------------------------------------------------------
consensus_10891#2 ------------------------------------------------------------
consensus_10891#0 GACTCATTACCGAT---------------------------------------------- 1267
consensus_10891#1 GGTCCAC 1206
consensus_10891#3 -------
consensus_10891#2 -------
consensus_10891#0 -------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||