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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1044 fasta sequence
[AGTAGATGGATTATTGTGTCGTTGATACGAATCATTATCATTACGATTNTGCGATCCATTAATTAATGGTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGTCAGTCATACCACCAAAAAGAAATAAACTACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGGAATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTCTATTCTCGGTGAAGTGGATTTTAGTTGCAGAATTATATTAGACATCAGAATGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG-GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC-TTCGTTCTTGAATAGCTA-AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA-TTATTT-TGAAAAGTTATACTGTTTAACTCGG-AGTTCAGTTTCATGCGATTCCAATATCTGC-GC-TGTTTAGCTGCCTCGTCCAACAATGCTGTAGTAGGTTGACTGATGACAACAACAGTATAGACATTGTGTACAACTGAGTGGTTTGTACCAACGTCGTCACTCGGTACAGAGATAAAATTACTGTCCTTTGCCAACAACTGTGACTTATTCTCTTCGAGATATGGAAGTGAAACTGCGGTTGCATGATAAAAGTCTATCGGTGGGCATCCAGGGATACCCTCGGAACATTGAACTTTGGTCCAGAACCAATTTACTTCAAACCATTCTTGACCAATATTCGGTGAACAACGAGTAAGTATCCATATATCTCTCGCCGGTCGACCATG]
[-] EMBL CD189046 [AGTAGATGGATTATTGTGTCGTTGATACGAATCATTATCATTACGATTNTGCGATCCATTAATTAATGGTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGTCAGTCATACCACCAAAAAGAAATAAACTACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGGAATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTCTATTCTCGGTGAAGTGGATTTTAGTTGCAGAATTATATTAGACATCAGAATGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGTACGATAAGCTCATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTGCGATGAACTTAGGTTTGATGGAAACGATCGAGCAAATGATTATGC ]
[-] EMBL CD096259 [ TGACCAAAAGCACATGAANAACCTAAGCATTCAGGTGGTGCGGAATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTTTATTTTCGGTGAAGTGGATTTTAGTTGCAGAATTATATAAGACATCAGAATGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCACGCGATTCCAATATCTGC GC TGagtat ]
[-] EMBL CD112819 [ cagGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCGATCAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAA ATCTGCGGCGTGTTTACCAGCCTCGatacc ]
[+] EMBL CD142763 [ TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTTCTG AGAGTTATACTGGTTGACCCGGNAG TCAGNTTCATGCGATTCCNATATCTGC GC TG ]
[+] EMBL CD142670 [ TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGANAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCNATATCTGC GC TG ]
[+] EMBL CD180367 [ TCAAGTTTTACATGGTTAGAGGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTA TT TGAAAAGTTATACAGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TG ]
[+] EMBL CD142733 [ TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCGTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGCTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTTCAATATCTGC GC Tn ]
[+] EMBL CD142696 [ TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAATTTATTT TGAAAAG TATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TG ]
[-] EMBL CD180411 [ CAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTCTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCATACAGCCGTTCATTCGTGAATAGCTAGAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGATGCTCCTCATC ]
[-] EMBL CD123825 [ CAAGTTTTACAGGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTATACGCTGCTCCTCATCCTCGTCATAAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGTTTAGCTGCCTCGTCCctggctt ]
[-] EMBL CD123759 [ CAAGTTTTACAGGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGGA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGTTTAGCTGCCTCGTCCAg ]
[-] EMBL CD123763 [ CAAGTTTTACAGGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCCGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGT ]
[-] EMBL CD180341 [ CAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTAGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGT ]
[-] EMBL CD123815 [ CAAGTTTTACAGGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCTGTTTCATGCGATTCCAATATCTGC GC TGT ]
[+] EMBL CD124461 [ GTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGTTTAGCTGCCTCGTCCAACAATGCTGTAGTAGGTTGACTGATGACAACAACAGTATAGACATTGTGTACAACTGAGTGGTTTGTACCAACGTCGTCACTCGGTACAGAGATAAAATTACTGTCCTTTGCCAACAACTGTGACTTATTCTCTTCGAGATATGGAAGTGAAACTGCGGTTGCATGATAAAAGTCTATCGGTGGGCATCCAGGGATACCCTCGGAACATTGAACTTTGGTCCAGAACCAATTTACTTCAAACCATTCTTGACCAATATTCGGTGAACAACGAGTAAGTATCCATATATCTCTCGCCGGTCGACCATG]
[+] EMBL CD163150 [ GTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGTTTAGCTGCCTCGTCCAACAATGCTGTAGTAGGTTGACTGATGACAACAACAGTATAGACATTGTGTACAACTGAGTGGTTTGTACCAACGTCGTCACTCGGTACAGAGATAAAATTACTGTCCTTTGCCAACAACTGTGACTTATTCTCTTCGAGATATGGAAGTGAAACTGCGGTTGCATGATAAAAGTCTATCGGTGGGCATCCAGGGATACCCTCGGAAC ]
consensusID : consensus_10897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 992 fasta sequence
[ACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAGATGTCCAGACCTGGACGATTGAAAAGTAGATGGATTATTGTGTCGTTGATACAAATCATTATCATTACGATTTTGCGATCCATTAATTAATGGTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGTACAACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGGAATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTTTATTTTCGGTGAAGTGGATTTTAGTGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCTACAGAAGAAATGTTAGATTATAAACTGTTATGAGAATATAGGCCTGGTTGTTTCAAATGAAAATGATAAAACAAACAGTTGAGTAATATGGATTTTTAATAACCATACAAAAAATTACAACCAAACAATGCGATTCGCGATATTAACTATGAGCTATCTAAAGAGAGTTACATACATTACTTTGAA]
[-] EMBL CD081003 [ACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAGATGTCCAGACCTGGACGATTGAAAAGTAGATGGATTATTGTGTCGTTGATACAAATCATTATCATTACGATTTTGCGATCCATTAATTAATGGTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGTACAACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGGAATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTTTATTTTCGGTGAAGTGGATTTTAGTGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGGACGATAAGCAC ]
[+] EMBL CD085808 [ aTGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCTACAGAAGAAATGTTAGATTATAAACTGTTATGAGAATATAGGCCTGGTTGTTTCAAATGAAAATGATAAAACAAACAGTTGAGTAATATGGATTTTTAATAACCATACAAAAAATTACAACCAAACAATGCGATTCGCGATATTAACTATGAGCTATCTAAAGAGAGTTACATACATTACTTTGAA]
consensusID : consensus_10897#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 670 fasta sequence
[GTAAACTTATACTTTTTGGTAGTACATGAAATATCACTAAAAAAAATCCTCCGTTTATTATAATACATTAACAGTACCGATCGATATCAAGATGATGGGTATCAGGAAAAGAAGAAAACAACTATGGCGAGTTTAAATTTACAATTTTGGTAGAAAATAAAATCTGAATGAAAAGTAGACCACAGTAGAATCAAAGTGTAAGTAATGTAAGAATTCTTAGTTGATGAGGAGTTTATGTATGTGCATACTAAACACAACGTAACTGACTGTATGTACAGAATAGCGATATATTTACAACCACGGGATAATTTATGTACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATACATGTTCACATGCTGCAAATAGCCTGGATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAGATGTCCTTGTGTAAGTGATCCATTTAATACTGAAGACCTGGACGATTGAAAAGTAGA]
[+] EMBL CD074829 [GTAAACTTATACTTTTTGGTAGTACATGAAATATCACTAAAAAAAATCCTCCGTTTATTATAATACATTAACAGTACCGATCGATATCAAGATGATGGGTATCAGGAAAAGAAGAAAACAACTATGGCGAGTTTAAATTTACAATTTTGGTAGAAAATAAAATCTGAATGAAAAGTAGACCACAGTAGAATCAAAGTGTAAGTAATGTAAGAATTCTTAGTTGATGAGGAGTTTATGTATGTGCATACTAAACACAACGTAACTGACTGTATGTACAGAATAGCGATATATTTACAACCACGGGATAATTTATGTACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATACATGTTCACATGCTGCAAATAGCCTGGATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAGATGTCCTTGTGTAAGTGATCCATTTAATACTGAAGACCTGGACGATTGAAAAGTAGA]
[-] EMBL CD143301 [ GTGCATACTAAACACAACGTAACTGACTGTATGTACAGAATAGCGATATATTTACAACCACGGGATAATTTATGTACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATACATGTTCACATGCTGCAAATAGCCTGGATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAG ]
[-] EMBL CD143410 [ GTGCATACTAAACACAACGTAACTGACCGTATGTACAGAATAGCGATATATTTACAACCACGGGATAATTTATGTACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATACATGTTCACATGCTGCAAATAGCCTGGATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAG ]
[-] EMBL CD143291 [ GTGCATACTAAACACAACGTAACTGACTGTATGTACAGAATAGCGATATATTTACAACCACGGGATAATTTATGTACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATACATGTTCACATGCTGCAAATAGCCTGGATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATAATTTACGCAAGGAGCAAG ]
consensusID : consensus_10897#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGTACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATTTGGTGATTCATGCATATGAAGCATTTCAAAATCAAAATACTCATACCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAATTATTTTGAAAAGTTATACTGTTTAACTCGGAGTTCAGTTTCATGCGATTCCAATATCTGCGCTGTCTAG]
[+] EMBL CD180290 [TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGTACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATTTGGTGATTCATGCATATGAAGCATTTCAAAATCAAAATACTCATACCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAATTATTTTGAAAAGTTATACTGTTTAACTCGGAGTTCAGTTTCATGCGATTCCAATATCTGCGCTGTCTAG]
consensusID : consensus_10897#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence
[GAACTTGGGTNTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGGTGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAATTATTTTGAAAAGTTATACTGTTTAACTCGGAGGTCAGTTTCATGCGATTCCCATATATTGGCGTGG]
[-] EMBL CD123828 [GAACTTGGGTNTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGGTGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAATTATTTTGAAAAGTTATACTGTTTAACTCGGAGGTCAGTTTCATGCGATTCCCATATATTGGCGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 ------------------------------------------------------------
consensus_10897#1 ACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAG 60
consensus_10897#2 ------------------------------------------------------------
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 ------------------------------------------------------------
consensus_10897#1 CTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAA 120
consensus_10897#2 ------------------------------------------------------------
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 ------------------------------------------------------------
consensus_10897#1 ATATATAAAAATCTATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAA 180
consensus_10897#2 ------------------------------------------------------------
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 ------------------------------------------------------------
consensus_10897#1 GTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTAT 240
consensus_10897#2 ------------------------------------------------------------
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 ----------------------------------------------------AGTAGATG 8
consensus_10897#1 CTGGTGAATGATTTACGCAAGGAGCAAGATGTCCAGACCTGGACGATTGAAAAGTAGATG 300
consensus_10897#2 ------------------------------------------------------------
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 GATTATTGTGTCGTTGATACGAATCATTATCATTACGATTNTGCGATCCATTAATTAATG 68
consensus_10897#1 GATTATTGTGTCGTTGATACAAATCATTATCATTACGATTTTGCGATCCATTAATTAATG 360
consensus_10897#2 ------------------------------------------------------------
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 GTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGTCAGTCATACCACCAA 128
consensus_10897#1 GTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGT--------------- 405
consensus_10897#2 --------------GTAAACTTATACTTTTTGGTAGTACATGAAA------TATCACTAA 40
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 AAAGAAATAAACTACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGG 188
consensus_10897#1 ----------ACAACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGG 455
consensus_10897#2 AAAAAATCCTCCGTTTATTATAATACATTAACAGTACCGATCGATATCAAGATGATGGGT 100
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 AATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTCTATTCT 248
consensus_10897#1 AATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTTTATTTT 515
consensus_10897#2 ATCAGGAAAAGAAGAAAACAACTATGGCGAGTTTAAATTTACAATTTTGGTAGAAAATAA 160
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 CGGTGAAGTGGATTTTAGTTGCAGAATTATATTAGACATCAGAATGGGAGTATATAATGT 308
consensus_10897#1 CGGTGAAGTGGATTTTAGT--------------------------GGGAGTATATAATGT 549
consensus_10897#2 AATCTGAATGAAAAGTAGAC-------------------CACAGTAGAATCAAAGTGTAA 201
consensus_10897#3 -----------------------------------TCAAGTTTTACATGGTTAGAAGGAT 25
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 TGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGAT 368
consensus_10897#1 TGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGAT 609
consensus_10897#2 GTAATGTAAGAATTCTTAGTTGATGAGGAGTTTATGTATGTGCATACTAAACACAACGTA 261
consensus_10897#3 ACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCAT 85
consensus_10897#4 -----------------GAACTTGGGTNTGATGGAAACGATCGAGCAAATGATGATGCAT 43
consensus_10897#0 ACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCAT 428
consensus_10897#1 ACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCAT 669
consensus_10897#2 ACTGACTGTATGTACA-GAATAGCGATATATTTACAACCACGGGATAATTTATG-TACAT 319
*** * * * * *** * * ** * *** * ***
consensus_10897#3 TAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAG 145
consensus_10897#4 TAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAG 103
consensus_10897#0 TAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAG 488
consensus_10897#1 TAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAG 729
consensus_10897#2 TTTGTGAACCAATA--CACATTGGGAAAACTAAAC--TCATTGTACTACAGTATATAAAG 375
* * * * ** ** * * * **** * * ** ** * ** *****
consensus_10897#3 CTTCAAGTCTTCGTGCACGTCT---GTTATTCGTACGCCTAGATGACGGAAGTTGCAGGA 202
consensus_10897#4 CTTCAAGTCTTCGTGCACGTCT---GTTATTCGCACGCCTAGGTGACGGAAGTTGCAGGA 160
consensus_10897#0 CTTCAAGTCTTCGTGCACGTCT---GTTATTCGCACGCCTAGATGACGGAAGTTGCAGGA 545
consensus_10897#1 CTTCAAGTCTTCGTGCACGTCT---GTTATTCGCACGCCTAGATGACGGAAGTTGCAGGA 786
consensus_10897#2 CTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAA 435
** ** ** *** * ** * ** *** * * * * *
consensus_10897#3 TCCCAGTCGATTCACGATTTGGTGATTCATGCATATGAAGCATTTCAAAATCAAAATACT 262
consensus_10897#4 TCCCAGTCGATTCACGAT------------------------------------------ 178
consensus_10897#0 TCCCAGTCGATTCACGAT------------------------------------------ 563
consensus_10897#1 TCCCAGTCGATTCACGATCTACAGAAGAA------------------------------- 815
consensus_10897#2 ATATATAAAAATCTATACATGTTCACATGCT--------GCAAATAGCCTGGATCAATCA 487
* * ** *
consensus_10897#3 CATACCAGTGATATCAGTTGA-ATGAGAGTGTTTAC----GC-TGCTCCTCATCCTCGTC 316
consensus_10897#4 -----CAGTGATATCAGTTGA-ATGAGAGTGTTTAC----GC-TGCTCCTCATCCTCGTC 227
consensus_10897#0 -----CAGTGATATCAGTTGA-ATGAGAGTGTTTAC----GC-TGCTCCTCATCCTCGTC 612
consensus_10897#1 -ATGTTAG-ATTATAAACTGTTATGAGAATATAGGCCTG-GT-TGTTTCAAATGAAAATG 871
consensus_10897#2 AAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAA 547
* * * * ** * * * * * * *
consensus_10897#3 ATTAGCATCATCATCTGACGTACGAGAAT---CTTGACCTACCGAATTATTTTGAAAAGT 373
consensus_10897#4 ATTAGCATCATCATCTGACGTACGAGAAT---CTTGACCTACCGAATTATTTTGAAAAGT 284
consensus_10897#0 ATTAGCATCATCATCTGACGTACGAGAAT---CTTGACCTACCGAATTATTTTGAAAAGT 669
consensus_10897#1 AT-AAAACAAACAGTTGAGTAATATGGAT---TTTTAATAACCATACAAAAAATTACAAC 927
consensus_10897#2 AAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGG 607
* * * ** * * ** * * * * *
consensus_10897#3 TATACTGTTTAACTCG-GAGTTCAGTTTCATGCGATTCC-AATATCT--GCGCTGTCTAG 429
consensus_10897#4 TATACTGTTTAACTCG-GAGGTCAGTTTCATGCGATTCC-CATATATTGGCGTGG----- 337
consensus_10897#0 TATACTGTTTAACTCG-GAGTTCAGTTTCATGCGATTCC-AATATCT--GCGCTGTTTAG 725
consensus_10897#1 CAAACAATGCGATTCGCGATATTAACTATGAGCTATCTA-AAGAGAGTTACATACATTAC 986
consensus_10897#2 AGCAAGATGTCCTTGTGTAAGTGA--TCCATTTAATACTGAAGACCTGGACGATTGAAAA 665
* * * * * * * ** * * *
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 CTGCCTCGTCCAACAATGCTGTAGTAGGTTGACTGATGACAACAACAGTATAGACATTGT 785
consensus_10897#1 TTTGAA------------------------------------------------------ 992
consensus_10897#2 GTAGA------------------------------------------------------- 670
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 GTACAACTGAGTGGTTTGTACCAACGTCGTCACTCGGTACAGAGATAAAATTACTGTCCT 845
consensus_10897#1 ------------------------------------------------------------
consensus_10897#2 ------------------------------------------------------------
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 TTGCCAACAACTGTGACTTATTCTCTTCGAGATATGGAAGTGAAACTGCGGTTGCATGAT 905
consensus_10897#1 ------------------------------------------------------------
consensus_10897#2 ------------------------------------------------------------
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 AAAAGTCTATCGGTGGGCATCCAGGGATACCCTCGGAACATTGAACTTTGGTCCAGAACC 965
consensus_10897#1 ------------------------------------------------------------
consensus_10897#2 ------------------------------------------------------------
consensus_10897#3 ------------------------------------------------------------
consensus_10897#4 ------------------------------------------------------------
consensus_10897#0 AATTTACTTCAAACCATTCTTGACCAATATTCGGTGAACAACGAGTAAGTATCCATATAT 1025
consensus_10897#1 ------------------------------------------------------------
consensus_10897#2 ------------------------------------------------------------
consensus_10897#3 -------------------
consensus_10897#4 -------------------
consensus_10897#0 CTCTCGCCGGTCGACCATG 1044
consensus_10897#1 -------------------
consensus_10897#2 -------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||