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Schistosoma mansoni
cluster # 10920 cluster # 10920       Sequences # 25       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10920#0 length = 852 sequences # 21  
consensus_10920#1 length = 442 sequences # 2  
consensus_10920#2 length = 298 sequences # 1  
consensus_10920#3 length = 293 sequences # 1  

consensusID : consensus_10920#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 21
consensus length = 852
fasta sequence
                              [TCAAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA-TTCCAAGATGGACGTCGATAAAGTGCGCATG-GAG-AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA-GACAGCA-AAATTACGA-TTGGCAAAAAT-GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT-GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTTTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTTTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGGAT]

[+] EMBL CD159152             [TCAAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAAGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGTTCCACAAGCTAATGTATTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD189940             [  AAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD083727             [                 GTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGANTAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGACGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGAT                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD081353             [                      TTGTGGGACGTGATTTTGCTAGTTTAATCGTCCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATAGTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGCTTGGAATAGTTTGATAATTGACACATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTCCACCAATTGTAATGTCCAATGTTTGTCTTTTAA TACCTTACAGCTTTTTTTTTCCGG TCCC TTACTAGTTGTGCATCGT AAATCCGCCT GTAATA TCATTTTG TTGAC AAATG TCTATGAATG AAT AACAA TCACTGAT TATCGAC AGAA TCAATTTGT TAGC AACCGCTTTACC  TCCAATAAgg     ]
[+] EMBL SM655                [                     aTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAGNAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATGGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATNAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGNTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCANTCAATGGGAGGACAGCA NAATTACGANTGGGNAAAAAT GACTGAAANCTCANAANCATCAGNTTCAANGGNAGGTGATGGAGATGATGATGTNCCGGAGCTTGGGGGAGGATNTGGGTGAGAAAAGTCGGNNGGGNTNGGTNGGTAAT                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD123617             [                          GGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCA                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD083000             [                          gcGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATACTTCCAAGATGGACGCTGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACANATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTG                                                                                                                                                                                                                                    ]
[+] EMBL CD159394             [                                  ATTCGGCTAGTTTAATCGCGCGGCTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD121729             [                                  ATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AGGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD194807             [                                           GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAGGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD194609             [                                           GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAATAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAGCTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD194632             [                                           GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTGGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD194629             [                                           GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD094974             [                                                                 TAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD170532             [                                                                                 ACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAACTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD139513             [                                                                                                      TGGACGTCGATAAAGTGCGCATGAGA  AAGTNGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA Gtcgcc                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD077477             [                                                                                                                                                            TGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTTACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCANAATTTACGA  TGGCAAAAAT GAATGA                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD067935             [                                                                                                                                                                                                                                      ATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGCACACACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA  TGTCTAAAATCCCAT ACGATTCAAAAACATCAGAT                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD075185             [                                                                                                                                                                                                                                                                                        CCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTTTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTTTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGG  ]
[-] EMBL CD076583             [                                                                                                                                                                                                                                                                                                                      CCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTCTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGGAT]
[-] EMBL CD186905             [                                                                                                                                                                                                                                                                                                                                                               AGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCGTTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTCTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTCTTATGAATGAAA                                                                          ]


>consensus_10920#0 TCAAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTG TTTATTAGACTGGAATTACTAACTTACAGAATATTCCAAGATGGACGTCGATAAAGTGCG CATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGG TACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACT ACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACAT GTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACA AGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCC AAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGAATGAAAACTC AAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTTGTGGAAGA TTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAAC GTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTAC AATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTTTTCGGTTCCCTTTACTAGTTGTGC ATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTTTTATGAATGAAATA AACAATTCACTGATATATCGACTAGAATTCAATTTGTATAGCAAACTGTATTAACATTCA AATAAATGGGAT



consensusID : consensus_10920#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 442
fasta sequence
                              [CGTGATTCGGCTAGTTTAATCAATATTCCAAGATGGACGTCGATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTG-AATATAAAACATTAAATGATTTGGTTCCAAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGAATGAAAACTCAAAACATCAGATTCAAAGCAGATGATGGAG]

[+] EMBL AI976311             [CGTGATTCGGCTAGTTTAATCAATATTCCAAGATGGACGTCGATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTG AATATAAAACATTAAATGATTTGGTTCCAAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGAATGAAAACTCAAAACATCAGATTCAAAGCAGATGATGGAG]
[+] EMBL CD142534             [                                     CGTCGATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAAATAT AAACATTANATGATTTTGTTt                                                                                           ]


>consensus_10920#1 CGTGATTCGGCTAGTTTAATCAATATTCCAAGATGGACGTCGATAAAGTGCGCATGGAGA AGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTC GTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTT CATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAAC CAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATG TATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGGTTCCAAATATGC TCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGAATGAAAACTCAAAACATC AGATTCAAAGCAGATGATGGAG



consensusID : consensus_10920#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence
                              [ATGGGANNGACACGCAAAATATACAGATTGGCCACAAAATAGATATGTAAAACTTCTAAAATACTATCTAGATTCTAAANNGGCAGATTTGTATGGAGATNNNTATGATGTACNNNCGGAGCGTTGTGGAAGNNATTTTGAGTGAGNNAAAAGTTCGCTTTGGAATAGTNNTTGATAATTGACAAANNTGTACGTTGANNGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACGCACAAACTTGG]

[-] EMBL CD061401             [ATGGGANNGACACGCAAAATATACAGATTGGCCACAAAATAGATATGTAAAACTTCTAAAATACTATCTAGATTCTAAANNGGCAGATTTGTATGGAGATNNNTATGATGTACNNNCGGAGCGTTGTGGAAGNNATTTTGAGTGAGNNAAAAGTTCGCTTTGGAATAGTNNTTGATAATTGACAAANNTGTACGTTGANNGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACGCACAAACTTGG]


>consensus_10920#2 ATGGGANNGACACGCAAAATATACAGATTGGCCACAAAATAGATATGTAAAACTTCTAAA ATACTATCTAGATTCTAAANNGGCAGATTTGTATGGAGATNNNTATGATGTACNNNCGGA GCGTTGTGGAAGNNATTTTGAGTGAGNNAAAAGTTCGCTTTGGAATAGTNNTTGATAATT GACAAANNTGTACGTTGANNGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGT CACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACGCACAAACTTGG



consensusID : consensus_10920#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence
                              [AGAAAAGTCGNTTGGAATAGTTGGATAATTGACAAATGTACGTGGAGTGAACGTGTGTGACTCAGTCATAATTTGGAATGAAGGTCACTCAGTACACCANTGGTATGTACAATGTTGGCTTTTAATTACTTCACAGNTTNTTTCTTCGGTTCCCTTNNTAGTTGTGCATTGTCAAATCGGCCTGGTAATATTCATTTNGTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTNGTATAGCAAACTGTATTAACATTCAAATAAA]

[+] EMBL SM722                [AGAAAAGTCGNTTGGAATAGTTGGATAATTGACAAATGTACGTGGAGTGAACGTGTGTGACTCAGTCATAATTTGGAATGAAGGTCACTCAGTACACCANTGGTATGTACAATGTTGGCTTTTAATTACTTCACAGNTTNTTTCTTCGGTTCCCTTNNTAGTTGTGCATTGTCAAATCGGCCTGGTAATATTCATTTNGTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTNGTATAGCAAACTGTATTAACATTCAAATAAA]


>consensus_10920#3 AGAAAAGTCGNTTGGAATAGTTGGATAATTGACAAATGTACGTGGAGTGAACGTGTGTGA CTCAGTCATAATTTGGAATGAAGGTCACTCAGTACACCANTGGTATGTACAATGTTGGCT TTTAATTACTTCACAGNTTNTTTCTTCGGTTCCCTTNNTAGTTGTGCATTGTCAAATCGG CCTGGTAATATTCATTTNGTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGA TATATCGACTAGAATTCAATTNGTATAGCAAACTGTATTAACATTCAAATAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10920#2      ------------------------------------------------------------
consensus_10920#3      ------------------------------------------------------------
consensus_10920#0      TCAAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTG 60
consensus_10920#1      ------------------------------------------------------------
                                                                                   

consensus_10920#2      ------------------------------------------------------------
consensus_10920#3      ------------------------------------------------------------
consensus_10920#0      TTTATTAGACTGGAATTACTAACTTACAGAATATTCCAAGATGGACGTCGATAAAGTGCG 120
consensus_10920#1      ------------------------------------------------------------
                                                                                   

consensus_10920#2      ------------------------------------------------------------
consensus_10920#3      ------------------------------------------------------------
consensus_10920#0      CATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGG 180
consensus_10920#1      ------------------------------------------------------------
                                                                                   

consensus_10920#2      ------------------------------------------------------------
consensus_10920#3      ------------------------------------------------------------
consensus_10920#0      TACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACT 240
consensus_10920#1      ------------------------------------------------------------
                                                                                   

consensus_10920#2      ------------------------------------------------------------
consensus_10920#3      ------------------------------------------------------------
consensus_10920#0      ACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACAT 300
consensus_10920#1      ------------------------------------------------------------
                                                                                   

consensus_10920#2      ------------------------------------------------------------
consensus_10920#3      ------------------------------------------------------------
consensus_10920#0      GTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACA 360
consensus_10920#1      ------------------------------------------------------------
                                                                                   

consensus_10920#2      ------------------------------------------------------------
consensus_10920#3      ------------------------------------------------------------
consensus_10920#0      AGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCC 420
consensus_10920#1      ------------------------------------------------------------
                                                                                   

consensus_10920#2      ------------------------------------------------------------
consensus_10920#3      ------------------------------------------------------------
consensus_10920#0      AAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGAATGAAAACTC 480
consensus_10920#1      ------------------CGTGATTCGGCTAGTTTAATCAATATTCCAAGATGGACGTCG 42
                                                                                   

consensus_10920#2      ------------------------------------------------------------
consensus_10920#3      ------------------------------------------------------------
consensus_10920#0      AAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTTGTGGAAGA 540
consensus_10920#1      ATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCG 102
                                                                                   

consensus_10920#2      ------ATGGGANNGACACGCAAAATATACAGATTGGCCACAAA-ATA--------GATA 45
consensus_10920#3      --------AGAAAAGTCGNTTGGAATAGTTGGATAATTGACAAATGTA--------CGTG 44
consensus_10920#0      TTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTA--------CGTT 592
consensus_10920#1      GTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATG 162
                                * *  *        ** *      *     * **   *           * 

consensus_10920#2      TGTAAAACTTCTAAAATACTATCTAGATTCTAAANNGGCAGATTTGTATGGAGATNNN-- 103
consensus_10920#3      GAGTGAACGTGTGTGACTCAGTCATAATTTGGAATGA--AGGTCACTCAGTACACCAN-- 100
consensus_10920#0      GAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGA-AAGTCACTCAGTACACCAA-- 649
consensus_10920#1      ATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAG 222
                            **  *        *  *    *      *     *             *      

consensus_10920#2      ---T-ATGATGTACNNNCGGAGCG---TTGTGGAAGNNATTTTGAGT-----GAGNNAA- 150
consensus_10920#3      ---T-GGTATGTACAATGTTGGCT---TT-TAATTACTTCACAGNTT-----NTTTCTT- 146
consensus_10920#0      ---TTGTAATGTACAATGTTTGTC---TTTTAATTACTTCACAGCTT-----TTTTTTTT 698
consensus_10920#1      AGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAG 282
                          *    *****               * *            *  *             

consensus_10920#2      AAGTTCGCTTTG-GAAT-AGTNNTTGATAATTGACAAANNTGTACGTTGANNGTGAACGT 208
consensus_10920#3      CGGTTCCCTTNN-TAGT-TGTGC------ATTGTCAAATCGGCCTGGTAATATTCATTTN 198
consensus_10920#0      CGGTTCCCTTTACTAGT-TGTGC------ATTGTCAAATCGTCCTGGTAATATTCATTTT 751
consensus_10920#1      CAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATG 342
                         * **        * *   *        * **   **           *   * *    

consensus_10920#2      GTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCA---GTAC-ACCAATTGTAATGT 264
consensus_10920#3      GTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATAT-ATCGACTAGAATTC 257
consensus_10920#0      GTTTGACAAAATGTTTTATGAATGAAATAAACAATTCACTGATAT-ATCGACTAGAATTC 810
consensus_10920#1      ATTTGGTTCCAAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGA 402
                        * **          *  *     *           **    **  *        ***  

consensus_10920#2      ACAATGTTTGTC---TTTTAATTACGCACAAACTTGG----- 298
consensus_10920#3      AATTNGTATAGCAAACTGTATTAACATTCAAATAAA------ 293
consensus_10920#0      AATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGGAT 852
consensus_10920#1      ATGAAAACTCAAAACATCAGATTCAAAGCAGATGATGGAG-- 442
                       *       *       *    *      ** *          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)