These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1501 fasta sequence [ATGTCTTCGATGGATGGTGATCGTGGTGATTTCAATGACGATCATGATAGGGATGAGGGCTTTCCAGACGAAGATCCTCCGTTTCAGTCAGAAAATACCTTTTCGGATGATGGGCGATATCAAGATGATATGCGGTACCCAGAGGATCGTTATCCAGATGATTCCCCTGTGCATAAACATGATGACCGTTACCCGGGACCCGGACCCCGTCATATGAGAATGATGAGGCCTCAATTTCGTCCAAGATTCCAGGGTGGCTACAGGGGGCACCCACGAATGCAGATGCATGGTGGCGGTCGAGGGAATTTCATGCGATCAGGAATGGGTCCACATCGTGGTCCCCAATATGATGGTTACGGTCAT-CCTATGGGCATGAACCGAGGATATCCACCAAGATTTAGTCCACAGTATCCTGGACGTTTTCAAGGCATAAGCGAAGACCAAATGGATGAGCAAATGGACGAAACACATCCTTCCGGCGACATGAACTACCCAGGTCACGGGGATATGCCGATGCCCCCTAACGCGTATCCTAATATGCAGCACATGCGCATGCGCGGTCCACCACCTCAATTCATGCCACCTAACAAACAGATGCCTCCTGACCACCAACAACCAGGTGCTCTCCCACCGGGTTCTGGCGGGCACCAGCCCTATGGTACAAACAATTCGTTCAATAGTCCACCTGGGTCTCATTATGGTGGACCACAGGCACCTTATGGTGGACCTGGAGCTCCTTATTCCGGAAACCAAAACAATCAACCCTTCGGAGCTCCACCGTTCAATGGCCCTCCTGTGTCTCAGTTCGGCGGTCCCCCATACAATGGTCCTCCAGTGTCACAGATGGGTGATCCTGGTTCAAATCTACCATCAGGACAGCAGTTTGCTCCACCCACAAGGCCATTTGGAGCACCTCCCGCTGGCCCCTTTCCCGTTCCTCCAACCGCGCCTTATGGCGGCCCAGGGCCCAACTCGCAACCCGCCGGGTCTTACAATGGCCCTTCACAATTTGCTGGGGCTCCAACCGGACCTCAAAGTGCTTCGTCGCAGAGTTTTACAAGTCGTTAACTAATGATTGGGAGGACCACCTTGCGGTGAAGCACTTTTCTGTTGAAGGTCAGTTAGAGTTCCGTGCATTGCTTTTTGTGCCTAAACGCGCACCAATTGATATGTTTGAAGGGACGCGAAAAAAGCGGAGCAACATTAAATTGTATGTGCGAAGAGTCCTCATCATGGATACCTGTGAGGATATGATTCCCGAGTACTTGAGTTTCGTTCGCGGAGTTGTCGACAGCGAGGACCTGCCTCTTAACATCAGTCGTGAGGAGTTGTCTGATGACGAATCTGTAAAAGTAGAGTCGAAAGAGACTGAAGAATCTGATGACAAGCCGAAAGTCGAAGATCTAGATGAAGACTAGGAAGACGAGAATAAGGAAAAGAAGAAAAAGAAGAAGGTAACGGAGAAGTATACTGAGGAAGAACAGTTGAACAAGCTCAAGCC] [+] EMBL CD122787 [ATGTCTTCGATGGATGGTGATCGTGGTGATTTCAATGACGATCATGATAGGGATGAGGGCTTTCCAGACGAAGATCCTCCGTTTCAGTCAGAAAATACCTTTTCGGATGATGGGCGATATCAAGATGATATGCGGTACCCAGAGGATCGTTATCCAGATGATTCCCCTGTGCATAAACATGATGACCGTTACCCGGGACCCGGACCCCGCCATATGAGAATGATGAGGCCTCAATTTCGTCCAAGATTCCAGGGTGGCTACAGGGGGCACCCACGAATGCAGATGCATGGTGGCGGTCGAGGGAATTTCATGCGATCAGGAATGGGTCCACATCGTGGTCCCCAATATGATGGTTACGGTC ] [-] EMBL CD123130 [ TGTCTTCGATGGATGGTGATCGTGGTGATTTCGATGACGATCATGGTAGGGGTGAGGGCTTTCCAGACGAAGATCCTCCGTTTCAGTCAGAAAATACCTTTTCGGATGATGGGCGATATCAAGATGATATGCGGTACCCAGAGGATCGTTATCCAGATGATTCCCCTGTGCATAAACATGATGACCGTTACCCGGGACCCGGACCCCGTCATATGAGAATGATGAGGCCTCAATTTCGTCCAAGATTCCAGGGTGGCTACAGGGGGCACCCACGAATGCAGATGCATGGTGGTGGTCGAGGGAATTTCATGCGATCAGGAATGGGTCCACATCGTGGTCCCCAATATGATGGTTACGGTCA ] [+] EMBL CD182080 [ GATAGGGATGAGGGCTTTCCAGACGAAGATCCTCCGTTTCAGTCAGAAAATACCTTTTCGGATGATGGGCGATATCAAGATGATATGCGGTACCCAGAGGATCGTTATCCAGATGATTCCCCTGTGCATAAACATGATGACCGTTACCCGGGACCCGGACCCCGTCATATGAGAATGATGAGGCCTCAATTTCGTCCAAGATTCCAGGGTGGCTACAGGGGGCACCCACGAATGCAGATGCATGGTGGCGGTCGAGGGAATTTCATGCGATCAGGAATGGGTCCACATCGTGGTCCCCAATATGATGGGTACGGTCATCCCTAT GGCATGAA ] [+] EMBL CD095743 [ atATGATTCCCCCGTGCATAAACATGATGACCGGTACCCGGGACCCGGACCCCGTCCTATGAGAATGATGAGGCCTCAATTTCGTCCAAGATTCCAGGGTGGGTACAGGGGGCACCCACGAATGCAGATGCATGGAGGCGGTCGAGGGAATTTGATGCGATCAGGAATGGGTCCACATCGTGGTCCCCAATATGATGGTTACGGTCAT ACTATGGGCATGAACCGAGGATATCCACCAAGATTTAGTCCACAGTATCCTGGACGTTTTCAAGGCATAAGCGAAGACCAAATGGATGA ] [+] EMBL CD164191 [ GTGCATAAACATGATGACCGTTACCCGGGACCCGGACCCCGTCATATGAGAATGATGAGGCCTCAATTTCGTCCAAGATTCCAGGGTGGCTACAGGGGGCACCCACGAATGCAGATGCATGGTGGCGGTCGAGGGAATTTCATGCGATCAGGAATGGGTCCACATCGTGGTCCCCAATATGATGGTTACGGTCAT CCTATGGGCATGAACCGAGGATATCCACCAAGATTTAGTCCACAGTATCCTGGACGTTTTCAAGGCATAAGCGAAGACCAAATGGATGAGCAAATGGACGAAACACATCCTTCCGGCGACATGAACTACCCAGGTCACGGGGATATGCCGATGCCC ] [+] EMBL CD071916 [ GACCGTTACCCGGGACCCGGACCCCGTCATATGAGAATGATGAGGCCTCAATTTCGTCCAAGATTCCAGGGTGGCTACAGGTGGCACCCACGAATGCAGATGCATGGTGGCGGTCGAGGGAATTTCATGCGATCAGGAATGGGTCCACATCGTGGTCCCCAATATGATGGTTACGGTCAT CCTATGAGCATGAACCGAGGATATCCACCAAGATTTAGTCCACAGTATCCTGGACGTTTTCAAGGCATAAGCGAAGACCAAATGGATGAGCAAATGGACGAAACACATCCTTCCGGCGACATGAACTACCCAGGTCACGGGGATATGCCGATGCCCCCTAACGCGTATCCTAATATGCA ] [-] EMBL CD166090 [ GTGGCTACAGGGGGCACCCACGAATGCAGATGCATGGTGGCGGTCGAGGGAATTTCATGCGATCAGGAATGGGTCCACATCGTGGTCCCCAATATGATGGTTACGGTCAT CCTATGGGCATGAACCGAGGATATCCACCAAGATTTAGTCCACAGTATCCTGGACGTTTTCAAGGCATAAGCGAAGACCAAATGGATGAGCAAATGGACGAAACACATCCTTCCGGCGACATGAACTACCCAGGTCACGGGGATATGCCGATGCCCCCTAACGCGTATCCTAATATGCAGCACATGCGCA ] [+] EMBL CD186377 [ TCGTGGTCCCCAATATGATGGTTACGGTCAT CCTATGGGCATGAACCGAGGATATCCACCAAGATTTAGTCCACAGTATCCTGGACGTTTTCAAGGCATAAGCGAAGACCAAATGGATGAGCAAATGGACGAAACACATCCTTCCGGCGACATGAACTACCCAGGTCACGGGGATATGCCGATGCCCCCTAACGCGTATCCTAATATGCAGCACATGCGCATGCGCGGTCCACCACCTCAATTCATGCCACCTAACAAACAGATGCCTCCTGACCACCAACAACCAGGTGCTCTCCCACCGGGTTCTGGCGGGCACCAGCCCTATGGTACAAACAATTCGTTCAATAGTCCACCTGGGTCTCATTATGGTGGACCACAGGCACCTTATGGTGGACCTGGAGCTCCTTATTCCGGAAAACAA ] [+] EMBL CD093897 [ GGATATCCACCAAGATTTAGTCCACAGTATCCTGGACGTTTTCAAGGCATAAGCGAAGACCAAATGGATGAGCAAATGGACGAAACACATCCTTCCGGCGACATGAACTACCCAGGTCACGGGGATATGCCGATGCCCCCTAACGCGTATCCTAATATGCAGCACATGCGCATGCGCGGTCCACCACCTCAATTCATGCCACCTAACAAACAGATGCCTCCTGACCACCAACAACCAGGTGCTCTCCCACCGGGTTCTGGCGGGCACCAGCCCTATGGTACAAACAATTCGTTCAATAGTCCACCTGGGTCTCATTATGGTGGACCACAGGCACCTTATGGTGGACCTGGAGCTCCTTATTCCGGAAACCAAAACAATCAACCCTTCGGAGCTCCACCGTTCAATGGCCCTCCTGTGTCT ] [+] EMBL CD063621 [ ATATCCACCAAGATTTAGTCCACAGTATCCTGGACGTTTTCAAGGCATAAGCGAAGACCAAATGGATGAGCAAATGGACGAAACACATCCTTCCGGCGACATGAACTACCCAGGTCACGGGGATATGCCGATGCCCCCTAACGCGTATCCTAATATGCAGCACATGCGCATGCGCGGTCCACCACCTCAATTCATGCCACC ] [+] EMBL CD178431 [ tggaaggCACCTCAATTCATGCCACCTAACAAACAGATGCCTCCTGACCACCAACAACCAGGTGCTCTCCCACCGGGTTCTGGCGGGCACCAGCCCTATGGTACAAACAATTCGTTCAATAGTCCACCTGGGTCTCATTATGGTGGACCACAGGCACCTTATGGTGGACCTGGAGCTCCTTATTCCGGAAACCAAAACAATCAACCCTTCGGAGCTCCACCGTTCAATGGCCCTCCTGTGTCTCAGTTCGGCGGTCCCCCATACAATGGTCCTCCAGTGTCACAGATGGGTGATCCTGGTTCAAATCTACCATCAGGACAGCAGTTTGCTCCACCCACAAGGCCATTTGGAGCACCT ] [+] EMBL CD178693 [ TCATGCCACCTAACAAACAGATGCCTCCTGACCACCAACAACCAGGTGCTCTCCCACCGGGTTCTGGCGGGCACCAGCCCTATGGTACAAACAATTCGTTCAATAGTCCACCTGGGTCTCATTATGGTGGACCACAGGCACCTTATGGTGGACCTGGAGCTCCTTATTCCGGAAACCAAAACAATCAACCCTTCGGAGCTCCACCGTTCAATGGCCCTCCTGTGTCTCAGTTCGGCGGTCCCCCATACAATGGTCCTCCAGTGTCACAGATGGGTGATCCTGGTTCAAATCTACCATCAGGACAGCAGTTTGCTCCACCCACAAGGCCATTTGGAGCACCTCCCGCTGGCC ] [+] EMBL CD095595 [ CAACAACCAGGTGCTCTCCCACCGGGTTCTGGCGGGCACCAGCCCTATGGTACAAACAATTCGTTCAATAGTCCACCTGGGTCTCATTATGGTGGACCACAGGCACCTTATGGTGGACCTGGAGCTCCTTATTCCGGAAACCAAAACAATCAACCCTTCGGAGCTCCACCGTTCAATGGCCCTCCTGTGTCTCAGTTCGGCGGTCCCCCATACAATGGTCCTCGAGTGTCACAGATGAGTGATCCTGATTCAAATCTACCATCAGGACAGCAGTTTG ] [+] EMBL CD095552 [ CAGCCCTATGGTACAAACAATTCGTTCAATAGTCCACCTGGGTCTCATTATGGTGGACCACAGGCACCTTATGGTGGACCTGGAGCTCCTTATTCCGGAAACCAAAACAATCAACCCTTCGGAGCTCCACCGTTCAATGGCCCTCCTGTGTCTCAGTTCGGCGGTCCCCCATACAATGGTCCTCCAGTGTCACAGATGGGTGATCCTGGTTCAAATCTACCATCAGGACAGCAGTTTGC ] [+] EMBL CD111304 [ AAAACAATCAACCCTTCGGAGCTCCACCGTTCAATGGCCCTCCTGTGTCTCAGTTCGGCGGTCCCCCATACAATGGTCCTCCAGTGTCACAGATGGGTGATCCTGGTTCAAATCTACCATCAGGACAGCAGTTTGCTCCACCCACAAGGCCATTTGGAGCACCTCCCGCTGGCCCCTTTCCCGTTCCTCCAACCGCGCCTTATGGCGGCCCAGGGCCCAACTCGCAACCCGCCGGGTCTTACAATGGCCCTTCACAATTTGCTGGGGCTCCAACCGGACCTCAAAGTGCTTCGTCGCAGAGTTTTACAAGTCGTTTACTAAT ] [-] EMBL CD110877 [ AATGGCCCTCCTGTGTCTCAGTTCGGCGGTCCCCCATACAATGGTCCTCCAGTGTCACAGATGGGTGATCCTGGTTCAAATCTACCATCAGGACAGCAGTTTGCTCCACCCACAAGGCCATTTGGAGCACCTCCCGCTGGCCCCTTTCCCGTTCCTCCAACCGCGCCTTACGGCGGCCCAGGGCCCAACTCGCAACCCGCCGGGTCTTACAATGGCCCTTCACAATTTGCTGGGGCTCCAACCGGACCTCAAAGTGCTTCGTCGCAGAGTTTTACAAGTCGTTAACTAATGATTGGGAGGACCACCTTGCGGTGAAGCACTTTTCTGTTGAAGGTCAGTTAGAGTTCCGTGCATTGCTTTTTGTGCCTAAACGCGCACCAATTGATATGTTTGAAGGGACGCGAAAAAAGCGGAGCAACATTAAATTGTATGTGCGAAGAGTCCTCATCATGGATACCTGTGAGG ] [-] EMBL CD098429 [ TCGGCGGTCCCCAATACAATGGTCCTCCAGTGTCACAGATGGGTGATCCTGGTTCAAATCTACCATCAGGACAGCAGTTTGCTCCACCCACAAGGCCATTTGGAGCACCTCCCGCTGGCCCCTTTCCCGTTCCTCCAACCGCGCCTTATGGCGGCCCAGGGCCCAACTCGCAACCCGCCGGGTCTTACAATGGCCCTTCACAATTTGCTGGGGCTCCAACCGGACCTCAAAGTGCTTCGTCGCAGAGTTTTACAAGTCGTTAACTAATGATTGGGAGGACCACCTTGCGGTGAAGCACTTTTCTGTTGAAGGTCAGTTAGAGTTCCGTGCATTGCTTTTTGTGCCTAAACGCGCACCAATTGATATGTTCGAAGGGACGCGAAAAAAGCGGAGCAACATTAAATTGTATGTGCGAAGAGTCCTCATCATGGATACCTGTGAGG ] [+] EMBL CD094825 [ GGGACGCGGAAAAAGCGGAGCAACATTAAATTGTATGTGCGAGGAGTCCTCATCATGGATACCTGTGAGGATATGATTCCCGAGTACTTGAGTTTCGTTCGCGGAGTTGTCGACAGCGAGGACCTGCCTCTTAACATCAGTCGTGAGGAGTTGTCTGATGACGAATCTGTAAAAGTAGAGTCGAAAGAGACTGAAGAATCTGATGACAAGCCGAAAGTCGAAGATCTAGATGAAGACTAGGAAGACGAGAATAAGGAAAAGAAGAAAAAGAAGAAGGTAACGGAGAAGTATACTGAGGAAGAACAGTTGAACAAGCTCAAGCC] consensusID : consensus_10921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 600 fasta sequence [CTAGATGACAGAATCTGTAACAAGATAAAGTCTGAAAGAGGACTGAACGAATCGTGATGACCTCGCCCAAAGTCTAGAATCTCGATGAAGACGAGGTAACACCAGAATAAGGAAGAGAAGAAAAAGAAGAAGGTAACGGATAATTGTACTGACGAACAACAGTTGAACAAGCTCAAGCCGGTCTGGACGCGCAATCCCCAAGATATAACTACAGAAGAGTATGCACGAGTTTTACAAGTCGTTAGCTAGTGATTGGGAGGACCACCTTGCAGTGAAGCACTTTTCTGTAGAAGGTCAGTTAAAGTTCCGTGCATTGGTTTTTGTGCCTAAACGCGCACCAATTGATATGTGTGAAGGGACGCGGAAAAAGCGGAGCAACATTAAATTGTATGTGCGAAGAGTCCTCATCATGGATACCTGTGAGGATATGATTCCCGAGTACTTGAGTTTCGTTCGCGGAGTTGTCGACAGCGAGGACCTGCCTCTTAACATCAGTCGTGAGGTGTTGCAACAGAACAACGTATTAAAGGTCATCCGTAAGAGCCTGGTCAGGAAATGTATTGAATTATTTGAAGAAGAATCCTTACCATTCACTGCCGA] [+] EMBL CD183971 [CTAGATGACAGAATCTGTAACAAGATAAAGTCTGAAAGAGGACTGAACGAATCGTGATGACCTCGCCCAAAGTCTAGAATCTCGATGAAGACGAGGTAACACCAGAATAAGGAAGAGAAGAAAAAGAAGAAGGTAACGGATAATTGTACTGACGAACAACAGTTGAACAAGCTCAAGCCGGTCTGGACGCGCAATCCCCAAGATTTAACTACAGAAGAGTATGCACGAGTTTTACAAGTCGTTAGCTAGTGATTGGGAGGACCACCTTGCAGTGAAGCACTTTTCTGTAGAAGGTCAGTTAAAGTTCCGCGCATTGGTTTTTGTGCCTAAACGCGCACCAATTGATATGTGTGAAGGGACGCGGAAAAAGCGGAGCATCATTAAATTGTATGTGCGAAGAGTCCTCATCATGGATACCTGTGAGGATATGATTCCCGACTACTTGAGTTTC ] [+] EMBL CD184047 [ tGATGAC GAATC GGAACAAG TAAAGTC GAAAGA GACTGAAC AATC TGATGACCT GCCGAAAGTCTAGAATCTCAATGAAGACGATGTAACACCAGAATAAGGAACAGAAGAAAAACAAGAAGGTAACGGATAATTGTACTGACGAACAACAGTTGAACAAGCTCAAGCCGGTCTGGACGCGCAATCCCCAAGATATAACTACATAAGAGTATGCACGAGTTTTACAAGTCGTTAGCTAGTGATTGGGAGGACCACCTTGCCGTGAAGCACTTTTCTGTAGAAGGTCAGTTAAAGTTCCCTGCATTGGTTTTTGTGCCTAAACGCGCACCAATTGATATGTGTGAAGGGACGCGGAAAAAGCGGAGCAACATTAAATTGTATGTGCGAAGAGTCCTCATCATGGATACCTGTGACGATATGATTCCCGAGTACTTGAGTTTC ] [+] EMBL CD181146 [ GAAAAAGAAGAAGGTAACGGAGAAGTATACTGAGGAAGAACAGTTGAACAAGCTCAAGCCGCTCTGGACGCGCAATCCCGAAGATATAACTACAGAAGAGTATGCA GAGTTTTACAAGTCGTTAACTAATGATTGGGAGGACCACCTTGCAGTGAAGCACTTTTCTGTTGAAGGTCAGTTAGAGTTCCGTGCATTGCTTTTTGTGCCTAAACGCGCACCAATTGATATGTTTGAAGGGACGCGGAAAAAGCGGAGTAACATTAAATTGTATGTGCGAAGAGTCCTCATCATGGATACCTGTGAGGATATGATTCCCGAGTACTTGAGTTTCGTTCGCGGAGTTGTCGACAGCGAGGACCTGCCTCTTAACATCAGTCGTGAGGTGTTGCAACAGAACAACGTATTAAAGGTCATCCGTAAGAGCCTGGTCAGGAAATGTATTGAATTATTTGAAGAAGAATCCTTACCATTCACTGCCGA] consensusID : consensus_10921#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [AATAATAATAATGATGATGATGATGGTGATTGTGGTGGTGTTATTTGCATGTGTCTGTGTGTATGCTGATAATGTTGGTAAGAAGATAGATGATGAATGAGAAGGCGACGGGCGAACTGAGAAATATGCAGTTGTGCTGATTCGCCGAGTTCTGATTTTGTGCAAACTAGTGTTGGGACTGTGATTGATTGTGTTTGACAAATTGTAATTGTATTTGGAGAAGAGATATTTACACTGTGTTTTAATGTGTTTTTGCTTTGTCAGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGGTGAGTGTGTGATTATATGCGTTGATGTGCATGTATGTGTTTTTCTATGTTTGAGTATATGATGTGTTACCTACATTGTGTAATCAGTTTGAAATGAACTGAAATGATGCTGAATAATGATAATGTTAATATTGGAGTTTGTTTTATTGTTGNTGNTGNTGNTGNTGNTGN] [+] EMBL CD114956 [AATAATAATAATGATGATGATGATGGTGATTGTGGTGGTGTTATTTGCATGTGTCTGTGTGTATGCTGATAATGTTGGTAAGAAGATAGATGATGAATGAGAAGGCGACGGGCGAACTGAGAAATATGCAGTTGTGCTGATTCGCCGAGTTCTGATTTTGTGCAAACTAGTGTTGGGACTGTGATTGATTGTGTTTGACAAATTGTAATTGTATTTGGAGAAGAGATATTTACACTGTGTTTTAATGTGTTTTTGCTTTGTCAGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGGTGAGTGTGTGATTATATGCGTTGATGTGCATGTATGTGTTTTTCTATGTTTGAGTATATGATGTGTTACCTACATTGTGTAATCAGTTTGAAATGAACTGAAATGATGCTGAATAATGATAATGTTAATATTGGAGTTTGTTTTATTGTTGNTGNTGNTGNTGNTGNTGN] consensusID : consensus_10921#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [AGCTATAACCCGACAGATTGGGGCCCAACAGACATACCAGAAGAGTTTAGAAACATGCCTTTTCAGCCATTTTCAAAGGATACCCGCCTAGGCAGAGTTGCAGATTGGTCAGGAAATATTTTTCAAGATATGAAAAACAAAGGTTTTATCTAAACTTTACCCTATGAAATTTTTAGGTCGCTATGTCTCCCAGTCTGTCGGTTCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTTCGTGAAACGAAAACTCCTGCTATTCGTCAAAGATATAGATTCCCTATGGTCAGT] [+] EMBL CD069393 [AGCTATAACCCGACAGATTGGGGCCCAACAGACATACCAGAAGAGTTTAGAAACATGCCTTTTCAGCCATTTTCAAAGGATACCCGCCTAGGCAGAGTTGCAGATTGGTCAGGAAATATTTTTCAAGATATGAAAAACAAAGGTTTTATCTAAACTTTACCCTATGAAATTTTTAGGTCGCTATGTCTCCCAGTCTGTCGGTTCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTTCGTGAAACGAAAACTCCTGCTATTCGTCAAAGATATAGATTCCCTATGGTCAGT] consensusID : consensus_10921#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [AAGATGTTCGGCGAGACATTGGGGTCTAGGTGAAGCGGACGCACAATGATGAAGCGGCTGAACAGGTTGCAATCGTGAACGTCGTGTCTGTGTTCGCTCCAGTCGAGATGGAAAAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGT] [+] EMBL CD059434 [AAGATGTTCGGCGAGACATTGGGGTCTAGGTGAAGCGGACGCACAATGATGAAGCGGCTGAACAGGTTGCAATCGTGAACGTCGTGTCTGTGTTCGCTCCAGTCGAGATGGAAAAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGT] consensusID : consensus_10921#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 89 fasta sequence [CGCGCACCAATTGATATGACCGAAGGGACGCGCAAAAAGCGGAGCAACATTAAAATGTATGTGCGAAAAGTCCTAATGATGGATACCTG] [+] EMBL AI976331 [CGCGCACCAATTGATATGACCGAAGGGACGCGCAAAAAGCGGAGCAACATTAAAATGTATGTGCGAAAAGTCCTAATGATGGATACCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 ATGTCTTCGATGGATGGTGATCGTGGTGATTTCAATGACGATCATGATAGGGATGAGGGC 60 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 TTTCCAGACGAAGATCCTCCGTTTCAGTCAGAAAATACCTTTTCGGATGATGGGCGATAT 120 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 CAAGATGATATGCGGTACCCAGAGGATCGTTATCCAGATGATTCCCCTGTGCATAAACAT 180 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 GATGACCGTTACCCGGGACCCGGACCCCGTCATATGAGAATGATGAGGCCTCAATTTCGT 240 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 CCAAGATTCCAGGGTGGCTACAGGGGGCACCCACGAATGCAGATGCATGGTGGCGGTCGA 300 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 GGGAATTTCATGCGATCAGGAATGGGTCCACATCGTGGTCCCCAATATGATGGTTACGGT 360 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 CATCCTATGGGCATGAACCGAGGATATCCACCAAGATTTAGTCCACAGTATCCTGGACGT 420 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 TTTCAAGGCATAAGCGAAGACCAAATGGATGAGCAAATGGACGAAACACATCCTTCCGGC 480 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 GACATGAACTACCCAGGTCACGGGGATATGCCGATGCCCCCTAACGCGTATCCTAATATG 540 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 CAGCACATGCGCATGCGCGGTCCACCACCTCAATTCATGCCACCTAACAAACAGATGCCT 600 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 CCTGACCACCAACAACCAGGTGCTCTCCCACCGGGTTCTGGCGGGCACCAGCCCTATGGT 660 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 ACAAACAATTCGTTCAATAGTCCACCTGGGTCTCATTATGGTGGACCACAGGCACCTTAT 720 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 GGTGGACCTGGAGCTCCTTATTCCGGAAACCAAAACAATCAACCCTTCGGAGCTCCACCG 780 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------CTAGATGACAGAATCTGTAACAAG 24 consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 TTCAATGGCCCTCCTGTGTCTCAGTTCGGCGGTCCCCCATACAATGGT-CCTCCAGTGTC 839 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ATAAA-GTCTGAAAGAGGACTGAACGAATCGTGATGAC-----CTCGCCCAAAGTCTAGA 78 consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 ACAGATGGGTGATCCTGGTTCAAATCTACCATCAGGACAGCAGTTTGCTCCACCCACAAG 899 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ATC--TCGATGAAGACGAGGTAACACCAGAATAAGGAAGAGAAGAAAAAGAAGAAGGTAA 136 consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 GCCATTTGGAGCACCTCCCGCTGGCCCCTTTCCCGTTCCTCCAACCGCGCCTTATGGCGG 959 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 CGGATAATTGTACTGACGAACAACAGTTGAACAAGCTCAAGCCGGTCTGGACGCGCAATC 196 consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 CCCAGGGCCCAACTCGCAACCCGCCG--GGTCTTACAATGGCCCTTCACAATTTGCTGGG 1017 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 -------------------AATAATAATAATGATGATGATGATGGTGATTGTGGTGGTGT 41 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 CCCAAGATATAACTACAGAAGAGTATGCAC--GAGTTTTACAAGTCGTTAGCTAGTGATT 254 consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 GCTCCAACCGGACCTCAAAGTGCTTCGTCGCAGAGTTTTACAAGTCGTTAACTAATGATT 1077 consensus_10921#4 -----------------------------------------AAGATGTTCGGCGA-GACA 18 consensus_10921#2 TATTTGCATGTGTCTGTGTGTATGCTGATAATGTTGGTAAGAAGATAGATGATGAATGAG 101 consensus_10921#3 -----------------------------------AGCTATAACCCGACAGATTGGGGCC 25 consensus_10921#1 GGGAGGACCACCTTGCAGTGAAGCACTTTTCTGTAGAAGGTCAGTTAAAGTTCCGTGCAT 314 consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 GGGAGGACCACCTTGCGGTGAAGCACTTTTCTGTTGAAGGTCAGTTAGAGTTCCGTGCAT 1137 consensus_10921#4 TTGGGGTCTAGGTGAAGCGGACGCACAATGATGAAGCGGCTGAAC--AGGTTGCAATCGT 76 consensus_10921#2 AAGGCGACGGGCGAACTGAGAAATATGCAGTTGTGCTGATTCGCCGAGTTCTGATTTTGT 161 consensus_10921#3 CAACAGACA---TACCAGAAGAGTTTAGAAACATGCCTTTTCAGCC-ATTTTCAAAGGAT 81 consensus_10921#1 TGGTTTTTGTGCCTAAACGCGCACCAATTGATATGTGTGAAGG-GACGCGGAAAAAGCGG 373 consensus_10921#5 -----------------CGCGCACCAATTGATATGACCGAAGG-GACGCGCAAAAAGCGG 42 consensus_10921#0 TGCTTTTTGTGCCTAAACGCGCACCAATTGATATGTTTGAAGG-GACGCGAAAAAAGCGG 1196 consensus_10921#4 -GAACGTCGTGTCTGTGTTCGCTCCAGTCGAGATGGAAAAGCGTGTCGGTGAGATGGAGG 135 consensus_10921#2 GCAAACTAGTGTTGGGACTGTGATTGATTGTGTTTGACAAATTGTAATTGTATTTGGAGA 221 consensus_10921#3 ACCCGCCTAGGCAGAGTTGCAGATTGGTCAGGAAATATTTTTCAAGATATGAAAAACAAA 141 * * consensus_10921#1 AGCAACATTAAATTGTATGTGCGAAGAGTCCTCA---TCATGGATACCTGTGAGGATATG 430 consensus_10921#5 AGCAACATTAAAATGTATGTGCGAAAAGTCCTAA---TGATGGATACCTG---------- 89 consensus_10921#0 AGCAACATTAAATTGTATGTGCGAAGAGTCCTCA---TCATGGATACCTGTGAGGATATG 1253 consensus_10921#4 CGGAATATGGTGAAGTTGGTG-AAGGCGTATTTG---AAGGTGAGACGGAAGCCGAGTCG 191 consensus_10921#2 AGAGATATTTACACTGTGTTTTAATGTGTTTTTGCTTTGTCAGGTGCGTGA-CCGAGCAA 280 consensus_10921#3 GGTTTTATCTAAACTTTACCCTATGAAATTTTTAGGTCGCTATGTCTCCCAGTCTGTCGG 201 * ** * * consensus_10921#1 ATTCCCGAGTACTTGAGTTTCGTTCGCGGAGTTGTCGACAGCGAGGACCTGCCTCTTAAC 490 consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 ATTCCCGAGTACTTGAGTTTCGTTCGCGGAGTTGTCGACAGCGAGGACCTGCCTCTTAAC 1313 consensus_10921#4 GCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGT------ 245 consensus_10921#2 GCAAGCGTGTGGGTGAATGA-ATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGT 339 consensus_10921#3 TTCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGT 261 consensus_10921#1 ATCAGTCGTGAGGTGTTGCAACAGAAC-AACGTATTAAAGGTCATCCGTAAGAGCCTGG- 548 consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 ATCAGTCGTGAGGAGTTGTCTGATGACGAATCTGTAAAAGTAGAGTCGAAAGAGACTGAA 1373 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 TGAGTAATCAACCGGGTGAGTGTGTGATTATATGCGTTGATGTGCATGTATGTGTTTTTC 399 consensus_10921#3 TCGTGAAACGAAAACTCCTGCTATTCGTCAAAGATATAGATTCCCTATGGTCAGT----- 316 consensus_10921#1 ---TCAGGAAATGTATTGAATTATTTGAAGAAGAATCCTTACCATTCACTGCCGA----- 600 consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 GAATCTGATGACAAGCCGAA--AGTCGAAGATCTAGATGAAGACTAGGAAGACGAGAATA 1431 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 TATGTTTGAGTATATGATGTGTTACCTACATTGTGTAATCAGTTTGAAATGAACTGAAAT 459 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#5 ------------------------------------------------------------ consensus_10921#0 AGGAAAAGAAGAAAAAGAAGAAGGTAACGGAGAAGTATACTGAGGAAGAACAGTTGAACA 1491 consensus_10921#4 ------------------------------------------------------------ consensus_10921#2 GATGCTGAATAATGATAATGTTAATATTGGAGTTTGTTTTATTGTTGNTGNTGNTGNTGN 519 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ---------- consensus_10921#5 ---------- consensus_10921#0 AGCTCAAGCC 1501 consensus_10921#4 ---------- consensus_10921#2 TGNTGN---- 525 consensus_10921#3 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||