These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 24 consensus length = 1956 fasta sequence [TTTTTTTATTTTTTTTTTTTTTTTTCCCGAGAAAATATTATATACTTGGTGTTTACAAACAAAAACTAAGATTTACAAAACTTCAATTTATATCATCAACTAAATAAAACGGCTTTGACAGTCAACCAGGGTTGGCTAACATATTATCTCTGGAGAGATGAATAAG-ACATAAAAAAACAAAAGCTTCATGAATAGATAACCGGAAAAAAAGGAATGTCCTAACCCTTGATTGAGACCGAAAACGAAGAGAAGTTTGGCGACTAAATCAGAATATTAACTGAAAGGACCACAAACTGACCGGAAGCATTAAAAAACTGGAAGCAGCTAACCAAATCGATCTTGAAGAGTGTGTACTACATCAGTTGCCAGATTTGACAACCGCCCAGCGACTTTAGTTACACTTTGTTTGACGCCATCTTTGATATTTTGTAATTCATTAGATACTTGAGATTGTCGCACTTTAGGACGACCAAAATAATCATCACTCGAAATGGATGAACTCCCTTGAAATCTTGAGAGCCCATCAGATTCAGAATCATTTCGGTCAAAAAACGCATCCGATGATATAGAAGTGGCGTTGGCAAACTTCTTCATTAGTTCACTTAGATCTGGATTAGTTTCTGATTGTGTAGACGAAAGAGATGTAGGCTGTTTGCTGGGTGATTTAGTTGGAAGTTCATCAGCGACAGTAGACAAATCACGTGTTCTGCTTGGCTTTTGATTAAAATGATTTGAAAAACGTTCATCCCAGTCATTGTCTCTTGATTTATTTTTTGACCATCCGCCATTCATACCATAAGTCGCAGAGCCTCCGAATAAATTATCATCTCCAGAATCGAAAAAATTGCGTGTATCACGGTCTCTATTACTGTAACTTGAAATGAAAAAAGGGTCCAAATTTGAACTTAGCGATGAAGTGTGGGTGGGAGCCGAGTTTTCTTGCTCTATTTTTTGAACATTTGCAAATGCTGAGTGCGATATTTCTCTGTTGCTTGTACCTATTTTACCCATACCAAGGCGTTCAGCTTGTTTGACACGTTGAGGGTCTGTAGAATTCACGTTGGCAGTGTCTTGCCTTTCACATTCATCGGTAATATCTTTATACGCTAACCGAAGCGACGCAAGCCGTTCTTCATTACGTTTCTCATTATCTTCTAAGTCCTGGTTAGTTGAGAGAATCTGACCTTTCATTTCAACATCAGCATGTTCGGCAGCCGAAACGATGGCAGAAAAATCAGCTTTCACCTTTGATGCCCCTAATCCACCTTTTTTAGCACTAGACCGTG-TA-GTATTCGGTTTTCTAGTTCCAATTACAGAAGGCATTTTTGTGGGACCAGATTCGGATACAGGAGAATTGAATAGATTATCAACAGTAGGCCCAACTGACTGTTCCAGAGTCATTTTTGTTGTTAATGTCACAGGTCCTTCCTTTCTGATGTCAGTTGTACCGCTTTCAGTATGCTCCTCAAAAAAGTCGGCCACCTGTCCACGTTTAGATTTCCCTTCATCGAGTTCCAGGACCAACTTGTTACCATGAGTTTTAACAGCGTCAATAGCAAGCTTTTCCAGCTTAGAACGGTACAGCTGGGAAGCACGACTTTGGTATTTTTCCTGCGCATCCAAGGAACGACAATTATTTTGAGAGAAGAACGTAAGCGCATTTTGATTGCCACCAACTTGCATTGCGCGTAACTGAACCCAGGTCCAGTTAGTATCTAGCTGCGTCGATCGAATGAAGCTTAGGTGAACTCCAAGTGAACGGTGGACTGCTGAACAGTCAATACAAAGAAAAACACCGTAGGTAACACTGGCCCATGTTGGATTTGTAGCACCACAGTCGAAGCATTGCTTGTTGCACGGCAAAGACTTCAGTTTGTTCAAAGTTGTAACTATTTCGTG-TTT-TGT-TGGTGGTACAGAAACCATTTCGTCCCACAGCAGAACGAAACAGTATACGTG] [+] EMBL AI394850 [TTTTTTTATTTTTTTTTTTTTTTTTCCCGAGAAAATATTATATACTTGGTGTTTACAAACAAAAACTAAGATTTACAAAACTTCAATTTATATCATCAACTAAATAAAACGGCTTTGACAGTCAACCAGGGTTGGCTAACATATTATCTCTGGAGAGATGAATAAG ACATAAAAAAACAAAAGCTTCATGAATAGATAACCGGAAAAAAAGGAATGTCCTAACCCTTGATTGAGACCGAAAACGAACAGAAGTTTGGCGACTAAATCAGAATATTAACTGAAAGGACCACAAACTGACCGGAAGCATTAAAAAACTGGAAGCAGCTAACCAAATCGATCTTGAAGAGTGTGTACTACATCAGTTGCCAGATTTGACAACCGCCCAGCGACTTTAGTTACACTTTGTTTGACGCCATCTTTGATATTTTGTAATTCATTAG ] [+] EMBL CD179706 [ TATACTTGGTGTTTACAAACAAAAACTAAGATTTACAAAACTTCAATTTATATCATCAACTAAATAAAACGGCTTTGACAGTCAACCAGGGTTGGCTAACATATTATCTCTGGAGAGATGAATAAGAACATAAAAAAACAAAAGCTTCAAGAATAGATAACCGGAAAAAAAGGAATGTCCTAACCCTTGATTGAGACCGAAAACGAAGAGAAGCTTGGCGACTAAATCAGAATATTAACTGAAAGGACCACAAACTGACCGGAAGCATTAAAAAACTGGAAGCAGCTAACCAAATCGATCTTGAAGAGTGTGTACTAC ] [+] EMBL CD202635 [ CCGGAAAAAAAGGAATGTCCTAACCCTTGACTGAGACCGANNACGAAGAGAAGTTTGGCGACTAAATCAGAATATTAACTGAAAGGACCACAAACTGACCGGAAGCATTAAAAAACTGGAGGGAGCTAACCAAATCGATCTTGAAGAGTGTGTACTACATCAGTTGCCAGATTTGACAACCGCCCAGCGACTTTAGTTACACTTTGTTTGACGCCATCTTTGATATTTTGTAATTCATTAGATACTTGAGATTGTCGCACTTTAGGACGACCAA ] [-] EMBL CD158336 [ TAACTGAAAGGACCACAAACTGACCGGAAGCATTAAAAAACTGGAAGCAGCTAACCAAATCGATCTTGAAGAGTGTGTACTACATCAGTTGCCAGATTTGACAACCGCCCAGCGACTTTAGTTACACTTTGTTTGACGCCATCTTTGATATTTTGTAATTCATTAGATACTTGAGATTGTCGCACTTTAGGACGACCAAAATAATCATCACTCGAAATGGATGAACTCCCTTGAAATCTTGAGAGCCCATCAGATTCAGAATCATTTCGGTCAAAAAACGCATCCGATGATATAGAAGTGGCGTTGGCAAACTTCTTCATTAGTTCACTTAGATCTGGATTAGTTTCTGATTGTGTAGACGAAAGAGATGTAGGCTGTTTGCTGGGTGATTTAGTTGGAAGTTCATCAGCGACAGTAGACAAATCACGTGTTCTGCTTGGCTTTTGATTAAAATGATTTGAAAAACGTTCATCCCAGTCATTGTCTCTTGATTTATTTTTTGACCATCCGCCA ] [-] EMBL CD158350 [ TAACTGAAAGGACCACAAACTGACCGGAAGCATTAAAAAACTGGAAGCAGCTAACCAAATCGATCTTGAAGAGTGTGTACTACATCAGTTGCCAGATTTGACAACCGCCCAGCGACTTTAGTTACACTTTGTTTGACGCCATCTTTGATATTTTGTAATTCATTAGATACTTGAGATTGTCGCACTTTAGGACGACCAAAATAATCATCACTCGAAATGGATGAACTCCCTTGAAATCTTGAGTGCCCATCAGATTCAGAATCATTTCGGTCAAAAAACGCATCCGATGATATAGAAGTGGCGTTGGCAAACTTCTTCATTAGTTCACTTAGATCTGGATTAGTTTCTGATTGTGTAGACGAAAGAGATGTAGGCTGTTTGCTGGGTGATTTAGTTGGAAGTTCATCAGCGACAGTAGACAAATCACGTGTTCTGCTTGGCTTTCGATTAAAATGATTTGAAAAACGTTCATCCCAGTCATTGTCTCTTGATTTATTTTTTGACCATCCGCCA ] [+] EMBL CD097328 [ TTTTGTAATTCATTAGATACTTGAGATTGTCGCACTTTAGGACGACTAAAATAATCATCACTCGAAATGGATGAACTCCCTTGAAATCTTGAGAGCCCATCAGATTCAGAATCATTTCGGTCAAAAAACGCATCCGATGATATGGAAGTGGCGTTGGCAAACTTCTTCATTAGTTCACTTAGATCTGGATTAGTTTCTGATTGTGTAGACGAAAGAGATGTAGGCTGTTTGCTGGGTGATTTAGTTGGAAGTTCATCAGCGACAGTAGACAAATCACGTGTTCTGCTTGGCTTTTGATTAAAATGATTTGAAAAACGTTCATCCCAGTCATTGTCTCTTGATTTATTTTTTGACCATCCGCCATTCATACCATAAGTCGCAGAGCCTCCGAATAAATTATCATCTCCAAAATCGAAAAAATTGCGTGTATCACGGTCTCTATTACTGTAACTTGAAATGAAAAAAGGGTCCAAATTTGAACTTAGCGATGAAGTGTGGGTGGGAGCCGAGTTTTCTTGCTCTATTTTTTGAACATTTGCAAATGCTGAGTGCGAT ] [-] EMBL CD170128 [ AGTTTCTGATTGTGTAGACGAAAGAGATGTAGGCTGTTTGCTGGGTGATTTAGTTGGAAGTTCATCAGCGACAGTAGACAAATCACGTGTTCTGCTTGGCTTTTGATTAAAATGATTTGAAAAACGTTCATCCCAGTCATTGTCTCCTGATTTATTTTTTGACCATCCGCCA ] [-] EMBL CD180615 [ TGCTGGGTGATTTAGTTGGAAGTTCATCAGCGACAGTAGACAAATCACGTGTTCTGCTTGGCTTTTGATTAAAATGATTTGAAAAACGTTCATCCCAGTCATTGTCTCTTGATTTATTTTTTGACCATCCGCCATTCATACCATAAGTCGCAGAGCCTCCGAATAAATTATCATCTCCAGAATCGAAAAAATTGCGTGTATCACGGTCTCTATTACTGTAACTTGAAATGAAAAAAGGGTCCAAATTTGAACTTAGCGATGAAGTGTGGGTGGGAGCCGAGTTTTCTTGCTCTATTTTTTGAACATTTGCAAATGCTGAGTGCGATATTTCTCTGTTGCTTGTACCTATTTTACCCATACCAAGGCGTTCAGCTTGTTTGACACGTTGAGGGTCTGTAGAATTC ] [-] EMBL CD138020 [ CATCAGCGACAGTAGACAAATCACGTGTTCTGCTTGGCTTTTGATTAAAATGATTTGAAAAACGTTCATCCCAGTCATTGTCTCTTGATTTATTTTTTGACCATCCGCCA ] [+] EMBL CD186671 [ TGATTAAAATGATTTGAAAAACGTTCATCCCAGTCATTGTCTCTTGATTTATTTTTTGACCATCCGCCATTCATACCATAAGTCGCAGAGCCTCCGAATAAATTATCATCTCCAGAATCGAAAAAATTGCGTGTATCACGGTCTCTATTACTGTAACTTGAAATGAAAAAAGGGTCCAAATTTGAACTTAGCGATGAAGTGTGGGTGGGAGCCGAGTTTTCTTGCTCTATTTTTTGAACATTTGCAAATGCTGAGTGCGATATTTCTCTGTTGCTTGTACCTATTTTACCCATACCAAGGCGTTCAGCTTGTTTGACACGTTGAGGGTCTGTAGAATTCACGTTGGCAGTGTCTTGCCTTTCACATTCATCGGTAATATCTTTATAC ] [-] EMBL CD132645 [ AAATGATTTGAAAAACGTTCATCCCAGTCATTGTCTCTTGATTTATTTTTTGACCATCCGCCATTCATACCATAAGTCGCAGAGCCTCCGAATAAATTATCATCTCCAGAATCGAAAAAATTGCGTGTATCACGGTCTCTATTACTGTAACTTGAAATGAAAAAAGGGTCCAAATTTGAACTTAGCGATGAAGTGTGGGTGGGAGCCGAGTTTTCTTGCTCTATTTTTTGAACATTTGCAAATGCTGAGTGCGATATTTCTCTGTTGCTTGTACCTATTTTACCCATACCAAGGCGTTCAGCTTGTTTGACACGTTGAGGGTCTGTAGAATTCACGTTGGCAGTGTCTTGCCTTTCACATTCATCGGTAATATCTTTATACGCTAACCGAAGCGACGCAAGCCGTTCTTCATTACGTTTCTCATTATCTTCTAAGTCCTGGTTAGTTGAG ] [-] EMBL CD060178 [ GAGCCTCCGAATAAATTATCATCTCCAGAATCGAAAAAATTGCGTGTATCACGGTCTCTATTACTGTAACTTGAAATGAAAAAAGGGTCCAAATTTGAACTTAGCGATGAAGTGTAGGTGGGAGCCGAGTTTTCTTGCTCTATTTTTTGAACATTTGCAAATGCTGAGTGCGATATTTCTCTGTTGCTTGTACCTATTTTACCCATACCAAGGCGTTCAGCTTGTTTGACACGTTGAGGGTCTGTAGAATTCACGTTGGCAGTGTCTTGCCTTTCACATTCATCGGTAATATCTTTATACGCTAACCGAAGCGACGCAAGCCGTTCTTCATTACGTTTCTCATTATCTTCTAAGTCCTGGTTAGTTGAGAGAATCTGACCTTTCATTTCAACATCAGCATGTTCGGCAGCCGAAACGATGGCAGAAAAATCAGCTTTCACCTTTGATGCCCCTAATCCACCTTTTTTAGCACTAGACTGTGCTACATATTCG ] [-] EMBL CD147817 [ TGCTGAGTGCGATATTTCTCTGTTGCTTGTACCTATTTTACCCATACCAAGGCGTTCAGCTTGTTTGACACGTTGAGGGTCTGTAGAGTTCACGTTGGCAGTGTCTTGCCTTTCACATTCATCGGTAATATCTTTATACGCTAACCGAAGCGACGCAAGCCGTTCTTCATTACGTTTCTCATTATCTTCTAAGTCCTGGTTAGTTGAGAGAATCTGACCTTTCATTTCAACATCAGCATGTTCGGCAGCCGAAACGATGGCAGAAAAATCAGCTTTCACCTTTGATGCCCCTAATCCACCTTTTTTAGCACTAGACCGTG TA GTATTCGGTTTTCTAGTTCCAATTACAGAAGGCATTTTTGTGGGACCAGATTCGGATACAGGAGAATTGAATAGATTATCAACAGTAGGCCC ] [-] EMBL CD171344 [ ACCAAGGCGTTCAGCTTGTTTGACACGTTGAGGGTCTGTAGAATTCACGTTGGCAGTGTCTTGCCTTTCACATTCATCGGTAATATCTTTATACGCTAACCGAAGCGACGCAAGCCGTTCTTCATTACGTTTCTCATTATCTTCTAAGTCCTGGTTAGTTGAGAGAATCTGACCTTTCATTTCAACATCAGCATGTTCGGCAGCCGAAACGATGGCAGAAAAATCAGCTTTCACCTTTGATGCCCCTAATCCACCTTTTTTAGCACTAGACCGTG TA GTATTCGGTTTTCTAGTTCCAATTACAGAAGGCATTTTTGTGGGACCAGATTCGGATACAGGAGAATTGAATAGATTATCAACAGTAGGCCCAACTGACTATTCCAGAGTCATTTTTGTTGTTAATGT ] [-] EMBL CD120018 [ CAGCTTGTTTGACACGTTGAGGGTCTGTAGAATTCACGTTGGCAGTGTCTTGCCTTTCACATTCATCGGTAATATCTTTATACGCTAACCGAAACGACGCAAGCCG TCTTCATTACG GTCT AATATCTct ] [-] EMBL CD120164 [ CAGCTTGTTTGACACGTTGAGGGTCTGTAGAATTCACGTTGGCAGTGTCTTGCCTTTCACATTCATCGGTAATATCTTTATACGCTAACCGAAGCGACGCAAGCCGTTCTTCATTACGTTTCTCATTATCT ] [-] EMBL CD120273 [ CAGCTTGTTTGACACGTTGAGGGTCTGTAGAATTCACGTTGGCACTGTCTTGCCTTTCACATTCATCGGTAATATCTTTATACGCTAACCGAAGCGACGCAAGCCGTTCTTCATTACGTTTCTCATTATCT ] [+] EMBL CD068400 [ AGCTTTCA CTTTGATGCCCCTAATCCACCTTTTTTAGCACTAGACCGTG TA GTATTCGGTTTTCTAGTTCCAATTACAGAAGGCATTTTTGTGGGACCAGATTCGGATACAGGAGAATTGAATAGATTATCAACAGTAGGCCCAACTGACTGTTCCTGAGTCATTTTTGTTGTTAATGTCACAGGTCCTTCCTTTCT ] [-] EMBL CD168121 [ GATTATCAACAGTAGGCCCAACTGACTGTTCCAGAGTCATTTTTGTTGTTAATGTCACAGGTCCTTCCTTTCTCATGTCAGTTGTACCGCTTTCAGTATGCTCCTCAAAAAAGTTGGCCACCTGTCCACGTTTAGATTTCCCTTCATCGAGTTCCAGGACCAACTTGTTACCATGAGTTTTAACAGCGTCAATAGCAAGCTTTTCCAGCTTAGAACGGTACAGCTGGGAAGCACGACTTTGGTATTTTTCCTGCGCATCCAAGGAACGACAATTATTTTGAGAGAAGAACATAAGCGCATTTTGATTGCCACCAACTTGCATTGCGCGTAACTGAACCCAGGTCCAGTTAGTATCTAGCTGCGTCGATCGAATGAAGCTTAGGTGAACTCCAAGTGAACGGTGGACTGCTGAACAGTCAATACAAAGAAAAACACCGTAGGTAACACTGGCCCATGTTGGATTTGTAGCACCACAGTCGAAGCATTGCTTGTTGCACGGCAAAGACTTCAGTTTGTTCAAAGTTGTAACTATTTCGTG TTT TGT TGGTGGTACAGAAACCATTTCGTCCCACAGCAGAACGAAACAGTATACGT ] [+] EMBL CD060983 [ ggtnctAGGTCCTTCCTTTCTGATGTGAGTTGTACCGCTTTCAGTATGCTCCTCAAAAAAGTCGGTCACCTGTCCACGTTTAGATTTCCCTTCGTCGAGTTCCAGGACCAACTTGTTACCATGAGTTTTAACAGCGTCAATAGCAAGCTTTTCCAGCTTAGAACGGTACAGCTGGGAAGCACGACTTTGGTATTTTTCCTGCGCATCCAAGGAACGACAATTATTTTGAGAGAAGAACGTAAGCGCATTTTGATTGCCACCAACTTGCATTGCGCGTAACTGAACCCAGGTCCAGTTAGTATCTAGCTGCGTCGATCGAATGAAGCTTAGGTGAACTCCAAGTGAACGGTGGACTGCTGAACAGTCAATACAAAGAAAAACACCGTAGGTAACACTGGCCCATGTTGGATTTGTAGCACCACAGTCGAAGCATTGCTTGTTGCACGGCAAAGACTTCAGTTTGTTCAAAGTTGTAACTATTTCGTG TTT TGT TGGTGGTACAGAAACCATTTCGTCCCACAGCAGAACGAAACAGTATACGT ] [+] EMBL CD113588 [ TTCTGATGTCAGGTGCACCGCTTTCAGTCTGCTCCTCAAAAAAGTCGGCCACCTGTCCACGTTTACATTTCCCTTCATCGAGTTCCAGGACCAACTTGTTACCATGAGTTTTAACAGCGTCAATAGCAAGCTTTTCCAGCTTATAACGGCACAGCTGGGAAGCACGACTTTGGTATTTTTCCTGCGCATCCAAGGAACGACAATCATTTTGAGAGAAGAATGTGAGCGCATTTTGATTGCCACCAACTTGCATTGCGCGTAACTGAACCCAGGTCCAGCTAGTATCTAGCTGCGTCGATCGAATGAAGCTTACGTGAACTCCAAGTGAACGGTGGACTGCTGAACAGTCAATACAAAGAAAAACACCGTAGGTAACACTGGCCCATGTTGGATTTGTAGCACCACAGTCGAAGCATTGCTTGTTGCACGGCAAAGACTCCAGTTTGTTCAGAATTGTAACTATTTCGTG TTG TGG TGGTGGTACAGAAACCATTTCG GCCACAGCAGAACGAAACAGTGTACGT ] [-] EMBL CD151892 [ TCAAAAAAGTCGGCCACCTGTCCACGTTAAGATTTCCCTTCATCGAGTTCCAGGACCAACTTGTAACCATGAGTTTTAACAGCGTCAATAGCAAGCTTTTCCAGCTTAGAACGGTACAGCTGGGAAGCACGACTTTGGTATTTTTCCTGCGCATCCAAGGAACGACAATTATTTTGAGAGAAGAACGTAAGCGCATTTTGATTGCCACCAACTTGCATTGCGCGTAACTGAACCCAGGTCCAGTTAGTATCTAGCTGCGTCGATCGAATGAAGCTTAGGTGAACTCCAAGTGAACGGTGGACTGCTGGACAGTCAATACAAAGAAAAACACCGTAGGTAACACTGGCCCATGTTGGATTTGTAGCACCACAGTCGAAGCATTGCTTGTTGCACGGCAAAGACTTCAGTTTGTTCAAAGTTGTAACTATTTCGTG TTT TGT TGGTGGTACAGAAACCATTTCGTCCCACAGCAGAACGAAACAGTATACGTG] [-] EMBL CD149055 [ TCGGCCACCTGTCCACGTTTAGATTTCCCTTCATCGAGTTCCAGGACCAACTTGTTACCATGAGTTTTAACAGCGTCAATAGCAAGCTTTTCCAGCTTAGAACGGTACAGCTGGGAAGCACGACTTTGGTATTTTTCCTGCGCATCCAAGGAACGACAATTATTTTGAGAGAAGAACGTAAGCGCATTTTGATTGCCACCAACTTGCATTGCGCGTAACTGAACCCAGGTCCAATTAGTATCTAGCT ] [-] EMBL CD180274 [ GAGAGAAGAACGTAAGCGCATTTTGATTGCCACCAACTTGCATTGCGCGTAACTGAACCCAGGTCCAGTTAGTATCTAGCTGCGTCGATCGAATGAAGCTTAGGTGAACTCCAAGTGAACGGTGGACTGCTGAACAGTCAATACAAAGAAAAACACCGTAGGTAACACTGGCCCATGTTGGATTTGTAGCACCACAGTCGAAGCATTGCTTGTTGCACGGCAAAGAATTCAGTTTGTTCAAAGTTGTAACTATATCGTGCTTTATGTATGGTGGTACAGAAACCATT ] consensusID : consensus_10935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [GTTCGTTTGAAACTATAAGACAGGAAGGATTACTAATTAGCGATCAACTATTCTGATCAAGTTACTTGTAACGGCGAGTAATATTAAGAAACAATTGAAAAGTATTTTACATGGTCCAGTCTTAGCGTATAATNTTTGTCATCAAAAAAGTTGGTGAACAATGTGTGTAGTATTTTAAAGAGCACTCAATTGATCGTACTTCTCAAAAATTGGTCAAAACACATATCATACTCAGTATTTATTTAGTGAACTTACTTGAAGAGTGTGTACTACATCAGTTGCCAGATTTGACAACCGCCCAGCGACTTTAGTTACACTTTGTTTGACGCCATCTTTGATATTTTGTAATTCATTAGATACTTGAGATTGTCGCACTTTAGGACGACCAAAATAATCATCACTCGAAATGGATGAACTCCCTTGAAATCCTGAGAGCCCATCAGATTCAGACTAGTATAAGTGAAAAAAGTGGATAAACAGATATTGCACATATATAGAGTCTTCGAAGGATAGAAAAACAAACATAAAAACTGATTAATTCAATTGTCACCTTTCAAAGAATATCGTTTTTAC] [-] EMBL CD116282 [GTTCGTTTGAAACTATAAGACAGGAAGGATTACTAATTAGCGATCAACTATTCTGATCAAGTTACTTGTAACGGCGAGTAATATTAAGAAACAATTGAAAAGTATTTTACATGGTCCAGTCTTAGCGTATAATNTTTGTCATCAAAAAAGTTGGTGAACAATGTGTGTAGTATTTTAAAGAGCACTCAATTGATCGTACTTCTCAAAAATTGGTCAAAACACATATCATACTCAGTATTTATTTAGTGAACTTACTTGAAGAGTGTGTACTACATCAGTTGCCAGATTTGACAACCGCCCAGCGACTTTAGTTACACTTTGTTTGACGCCATCTTTGATATTTTGTAATTCATTAGATACTTGAGATTGTCGCACTTTAGGACGACCAAAATAATCATCACTCGAAATGGATGAACTCCCTTGAAATCCTGAGAGCCCATCAGATTCAGACTAGTATAAGTGAAAAAAGTGGATAAACAGATATTGCACATATATAGAGTCTTCGAAGGATAGAAAAACAAACATAAAAACTGATTAATTCAATTGTCACCTTTCAAAGAATATCGTTTTTAC] consensusID : consensus_10935#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 171 fasta sequence [AGCCCACACTGCCGTAGGTAACACTGGCCCATGTTGGATTTGTAGCACCACAGTCGAAGCATTGCTTGTTGCACGGCAAAGACTTCAGTTTGTTCAAAATTGTAACTATTTCGTGTTTTGTTGGTGGTACAGAAACCATTTCGTCCCACAGCAGAACGAAACAGTATACGT] [+] EMBL CD185623 [AGCCCACACTGCCGTAGGTAACACTGGCCCATGTTGGATTTGTAGCACCACAGTCGAAGCATTGCTTGTTGCACGGCAAAGACTTCAGTTTGTTCAAAATTGTAACTATTTCGTGTTTTGTTGGTGGTACAGAAACCATTTCGTCCCACAGCAGAACGAAACAGTATACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10935#0 TTTTTTTATTTTTTTTTTTTTTTTTCCCGAGAAAATATTATATACTTGGTGTTTACAAAC 60 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 AAAAACTAAGATTTACAAAACTTCAATTTATATCATCAACTAAATAAAACGGCTTTGACA 120 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 GTCAACCAGGGTTGGCTAACATATTATCTCTGGAGAGATGAATAAGACATAAAAAAACAA 180 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 AAGCTTCATGAATAGATAACCGGAAAAAAAGGAATGTCCTAACCCTTGATTGAGACCGAA 240 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 AACGAAGAGAAGTTTGGCGACTAAATCAGAATATTAACTGAAAGGACCACAAACTGACCG 300 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 GAAGCATTAAAAAACTGGAAGCAGCTAACCAAATCGATCTTGAAGAGTGTGTACTACATC 360 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 AGTTGCCAGATTTGACAACCGCCCAGCGACTTTAGTTACACTTTGTTTGACGCCATCTTT 420 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 GATATTTTGTAATTCATTAGATACTTGAGATTGTCGCACTTTAGGACGACCAAAATAATC 480 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 ATCACTCGAAATGGATGAACTCCCTTGAAATCTTGAGAGCCCATCAGATTCAGAATCATT 540 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 TCGGTCAAAAAACGCATCCGATGATATAGAAGTGGCGTTGGCAAACTTCTTCATTAGTTC 600 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 ACTTAGATCTGGATTAGTTTCTGATTGTGTAGACGAAAGAGATGTAGGCTGTTTGCTGGG 660 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 TGATTTAGTTGGAAGTTCATCAGCGACAGTAGACAAATCACGTGTTCTGCTTGGCTTTTG 720 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 ATTAAAATGATTTGAAAAACGTTCATCCCAGTCATTGTCTCTTGATTTATTTTTTGACCA 780 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 TCCGCCATTCATACCATAAGTCGCAGAGCCTCCGAATAAATTATCATCTCCAGAATCGAA 840 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 AAAATTGCGTGTATCACGGTCTCTATTACTGTAACTTGAAATGAAAAAAGGGTCCAAATT 900 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 TGAACTTAGCGATGAAGTGTGGGTGGGAGCCGAGTTTTCTTGCTCTATTTTTTGAACATT 960 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 TGCAAATGCTGAGTGCGATATTTCTCTGTTGCTTGTACCTATTTTACCCATACCAAGGCG 1020 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 TTCAGCTTGTTTGACACGTTGAGGGTCTGTAGAATTCACGTTGGCAGTGTCTTGCCTTTC 1080 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 ACATTCATCGGTAATATCTTTATACGCTAACCGAAGCGACGCAAGCCGTTCTTCATTACG 1140 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 TTTCTCATTATCTTCTAAGTCCTGGTTAGTTGAGAGAATCTGACCTTTCATTTCAACATC 1200 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 AGCATGTTCGGCAGCCGAAACGATGGCAGAAAAATCAGCTTTCACCTTTGATGCCCCTAA 1260 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 TCCACCTTTTTTAGCACTAGACCGTGTAGTATTCGGTTTTCTAGTTCCAATTACAGAAGG 1320 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 CATTTTTGTGGGACCAGATTCGGATACAGGAGAATTGAATAGATTATCAACAGTAGGCCC 1380 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ------------------------------------------------------------ consensus_10935#0 AACTGACTGTTCCAGAGTCATTTTTGTTGTTAATGTCACAGGTCCTTCCTTTCTGATGTC 1440 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 --------------------GTTCGTTTGAAACTATAAGACAGGAAGGATTACTAATTAG 40 consensus_10935#0 AGTTGTACCGCTTTCAGTATGCTCCTCAAAAAAGTCGGCCACCTGTCCACGTT-TAGATT 1499 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 CGATCAACTATTCTGATCAAGTTACTTGTAACGGCGAGTAATATTAAGAAACAATTGAAA 100 consensus_10935#0 TCCCTTCATCGAGTTCCAGGACCAACTTGTTACCATGAGTTTTAACAGCGTCAATAGCAA 1559 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 AGTATTTTACATGGTCCAGTCTTAGCGTATAATNTTTGTCATCAAAAAAGTTGGTGAACA 160 consensus_10935#0 GCTTTTCCAGCTTAGAACGGTACAGCTGGGAAGCACGACTTTGGTATTTTTCCTGCGCAT 1619 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ATGTGTGTAGTATTTTAAAGAGCACTCAATTGATCGTACTTCTCAAAAATTGGTCAAAAC 220 consensus_10935#0 CCAAGGAACGACAATTATTTTGAGAGAAGAACGTAAGCGCATTTTGATTGCCACCAACTT 1679 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 ACATATCATACTCAGTATTTATTTAGT-GAACTTACTTGAAGAGTGTGTACTAC-ATCAG 278 consensus_10935#0 GCATTGCGCGTAACTGAACCCAGGTCCAGTTAGTATCTAGCTGCGTCGATCGAATGAAGC 1739 consensus_10935#2 ------------------------------------------------------------ consensus_10935#1 TTGCCAGATTTGACAACCGCCCAGCGACTTTAGTTACACTTTGTTTGACGCCATCTTTGA 338 consensus_10935#0 TTAGGTGAACTCCAAGTGAACGGTGGACTGCTGAACAGTCAATACAAAGAAAAACACCGT 1799 consensus_10935#2 ---------------------------------------------AGCCCACACTGCCGT 15 consensus_10935#1 TATTTTGTAATTCATTAGATACTTGAGATTGTCGCACTTTAGGACGACCAAAATAATCAT 398 * * * * consensus_10935#0 AGGTAACACTGGCCCA----TGTTGGATTTGTAGCACCACAGTCGAAGCATTGCTTGTTG 1855 consensus_10935#2 AGGTAACACTGGCCCA----TGTTGGATTTGTAGCACCACAGTCGAAGCATTGCTTGTTG 71 consensus_10935#1 CACTCGAAATGGATGAACTCCCTTGAAATCCTGAGAGCCCATCAGATTCA--GACTAGTA 456 * * *** * *** * * * * * ** ** ** * * * consensus_10935#0 CACGGCAAAGACTTCAGTTTGTTCAAAGTTGTAACTATTTCGTGTTTT--GTTGGTGG-- 1911 consensus_10935#2 CACGGCAAAGACTTCAGTTTGTTCAAAATTGTAACTATTTCGTGTTTT--GTTGGTGG-- 127 consensus_10935#1 TA-AGTGAAAAAAGTGGATAAACAGATATTGCACATATATAGAGTCTTCGAAGGATAGAA 515 * * ** * * * * *** * *** * * ** ** * * * consensus_10935#0 -------TACAGAAACCATTTCGTCCCACAGCAGAACGAAACAGTATA-CGTG----- 1956 consensus_10935#2 -------TACAGAAACCATTTCGTCCCACAGCAGAACGAAACAGTATA-CGT------ 171 consensus_10935#1 AAACAAACATAAAAACTGATTAATTCAATTGTCACCTTTCAAAGAATATCGTTTTTAC 573 * * **** ** * * * * * ** *** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||