These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 794 fasta sequence [ATCCGNNAAATCGATAATACGACTCACTAAGGATCCGTCGACATCTGTACCTTTGTTTACGCGGCGACCCGACCAACCTCAAAGCT-AGGGTAATGGCC-GTTCTAAAGCTGTTATGCCCGTTATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG-ACCCAAAGTTAC-TGACAA-AGTGT-TTT-TCGATA-TTGA-AGTTGATGG-AAAAC-CACT-TGGT-CGAATAATTATCGGATTGTTTGGTAAAA-CAGTGCCTAAGACAGTGGAAAATTTCAAACAA-CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTCGTGAATATAATTTA] [+] EMBL SM30874 [ATCCGNNAAATCGATAATACGACTCACTAAGGATCCGTCGACATCTGTACCTTTGTTTACGCGGCGACCCGACCAACCTCAAAGCT AGGGTAATGGCC GTTCTAAAGCCGTTATGCCCGTTATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG ACCCAAAGTTAC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAAAC CACT TGCT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTCGTGAATATAATTTA] [+] EMBL AI976137 [ CCCGACCAACCTCAAAGCT AGGGTAATGGCC GTTCTAAAGCTGTTATGCCCGTTATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG ACCCAAAGTTAC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAAAC CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTT ] [-] EMBL CD142653 [ acCCTCAAAGCTAAGGGAAATGGCCGGTTTAAAAGCTGTTATCCCGGTTATTACTACTGTTTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG ACCAAAAGTACC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAACC CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAACCAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCTCGATGGAACTGGAGGTTTTAGTAGTTcta ] [+] EMBL CD137155 [ aCTTATTCGCAGGGAAGCGAATGGTACCCAAAGTTACGTGACAATAGTGTCTTTATTGATATTTGAGAGGAGAAGGTAAAACGCACTATGGTACGAATAATTATCGAATTGTTTGGAAAAA CAGTGCCTAAGACAGAGTGAAATGTCAGACAA CTTTCAATTGGCACTCAACTGAAGGAGGGTCGAACTGCTTCATATAAAGGACGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTAACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGATAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTNGTAAGAGCATCAAGATAGCCAGCTGCGGCCACATTCCCGT GAAATACCCTTCTCGGT ACGAACTCTGATGCTGTCG ] [-] EMBL CD164177 [ G ACCCAAAGTTAC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAAAC CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCA ] [-] EMBL CD156269 [ CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTC ] [-] EMBL CD156460 [ CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAGGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTC ] [+] EMBL CD137086 [ T CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ] [+] EMBL CD137010 [ T CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ] [-] EMBL CD136650 [ GAATAAATATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGG AAATTTC AACAACCTTTCAATTGGCACTCAACTGAAGGATGGTCGANCTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA ] [-] EMBL CD138463 [ CTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCTCGATGGAACTGGAGGTTNTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTG ] [+] EMBL CD137056 [ ttCTTCATA AAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGCCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGCGAAGACCTCGCGGTT ] [-] EMBL AI067529 [ GGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCAATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTCGTGAATATAATTTA] [+] EMBL CD136925 [ CACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTCCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTTTTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ] [+] EMBL CD137104 [ CACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTGCTCTTACCAACAAGGATCTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAGTTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ] [+] EMBL CD137013 [ CACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ] [-] EMBL CD137281 [ ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAATCCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGTCCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAATCGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA ] [+] EMBL CD137145 [ ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCTCAAACCACGATGGCACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACTTTGTTAGACAGATTGAAAGCGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ] [+] EMBL CD136942 [ ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCCTCTCGGTAACGAACTCTGATGCTGTCG ] [+] EMBL CD136987 [ ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGAC ] [-] EMBL CD137221 [ CTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTCCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA ] [-] EMBL CD136637 [ CTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAAT GTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA ] [-] EMBL CD136712 [ TCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA ] consensusID : consensus_10936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [TATGTATTTGAGTAATAAATAAATGCTTTCATCATAAATAAATACGTAATCTTTTCAGATGTACCTGCATCTCAGAGTTGATGTTCACTCTAGGGACTCGAACCCAGTACCTTTCGCTTCAAACGCCATCGCGTTATCCACTCAGCTACTGAGTCATAAATGATTACAATCTGTATTGTTTTAGTAGCCTGAGATTTAATTCCAGTTGGATTGTATGTTGATCGTTTCTGATTGTTATTGAGATATACATATAGGCTATCGTCGTCGTATATAACTATTGAATTAACTGGCGTTAGTGAATAATGGAATGAAATAAGTCGTGTAAATATGAGAATGGATTTCGAATATGTATATTTTGTACAATCATTAATCCAGGAAGACGATTAAAGGAGCGGAACAAAGCGAAACGAAATAATGCGCGTTGGAGGAGGTACATAAGAACACATTACGTCGGGAAATAGAAGCAGATATGAAAAGGATGAATAACAACTGGAACGAACTGGAAAGGATTGACCAGGACAAGGTTGGATGGAGAATGCTGGTGAGCGGCCTATGCTCCTCCACGAGGGGTAA] [+] EMBL CD077238 [TATGTATTTGAGTAATAAATAAATGCTTTCATCATAAATAAATACGTAATCTTTTCAGATGTACCTGCATCTCAGAGTTGATGTTCACTCTAGGGACTCGAACCCAGTACCTTTCGCTTCAAACGCCATCGCGTTATCCACTCAGCTACTGAGTCATAAATGATTACAATCTGTATTGTTTTAGTAGCCTGAGATTTAATTCCAGTTGGATTGTATGTTGATCGTTTCTGATTGTTATTGAGATATACATATAGGCTATCGTCGTCGTATATAACTATTGAATTAACTGGCGTTAGTGAATAATGGAATGAAATAAGTCGTGTAAATATGAGAATGGATTTCGAATATGTATATTTTGTACAATCATTAATCCAGGAAGACGATTAAAGGAGCGGAACAAAGCGAAACGAAATAATGCGCGTTGGAGGAGGTACATAAGAACACATTACGTCGGGAAATAGAAGCAGATATGAAAAGGATGAATAACAACTGGAACGAACTGGAAAGGATTGACCAGGACAAGGTTGGATGGAGAATGCTGGTGAGCGGCCTATGCTCCTCCACGAGGGGTAA] consensusID : consensus_10936#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [GAATTTAATCACTAAAAAGTTTTTGTTAATTGTTTATGACGGCATATAAGTTGTTACACAAACTAATCTCTAGCTTATGTCAGATGTAGCTAACCGTCAATTAGTGGAAATAACATCTTCGAATTCATGAATGAAATTGCTATCGATTGTTAAGTAGAGTGCTGTATTACAATTTTCTTATTGTTAATTACATGAAATCAATCGATCAACTAGATACTAGGAAGTCAAGTCAACTATGACAACTATTATTGTTAGGCGATAATTACTCAATCTAACCTGAATAACTGTCACGGTAAGAATCCATTCATAATCAATTTGACTACAGAGTTAAATACATAAAATTCCAATACTGATTTTTCCAAAGTAACTATTTACTTGTTTAACGTATTACTTACTTACTTACTTACTCACACATGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCAGGGCAATCCTTTCCAGTTCCTTCCAGTTGTTATTCATTCTGTTCATATCTGCTTCTATTTCCTGGCTAACCAGAAAAA] [+] EMBL CD090004 [GAATTTAATCACTAAAAAGTTTTTGTTAATTGTTTATGACGGCATATAAGTTGTTACACAAACTAATCTCTAGCTTATGTCAGATGTAGCTAACCGTCAATTAGTGGAAATAACATCTTCGAATTCATGAATGAAATTGCTATCGATTGTTAAGTAGAGTGCTGTATTACAATTTTCTTATTGTTAATTACATGAAATCAATCGATCAACTAGATACTAGGAAGTCAAGTCAACTATGACAACTATTATTGTTAGGCGATAATTACTCAATCTAACCTGAATAACTGTCACGGTAAGAATCCATTCATAATCAATTTGACTACAGAGTTAAATACATAAAATTCCAATACTGATTTTTCCAAAGTAACTATTTACTTGTTTAACGTATTACTTACTTACTTACTTACTCACACATGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCAGGGCAATCCTTTCCAGTTCCTTCCAGTTGTTATTCATTCTGTTCATATCTGCTTCTATTTCCTGGCTAACCAGAAAAA] consensusID : consensus_10936#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [ACAAAACCACTTCTCATATTAGTGAAAACGAGCTCTCTAGTGACTGATTTCATTAGATATTTCCTGGAATTCTGATGAGACGCAGAAATGAGTGGAGCTGGAATAGGTTTGTTTTGAATAATATCTCACTGAAGGCAATGGTGGATGTGTCGCTGAATTTCGTGGATCGGTTGAATTTTGAAATGAACATGGTTGGTTGATTGATTAGTGTTCTTGAGTTTGAGGGCTTGCGCACAAACCATTGAAATGCCGTGTTCTTATTTTGAGAGGCGGTATAGTGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCG] [+] EMBL CD161634 [ACAAAACCACTTCTCATATTAGTGAAAACGAGCTCTCTAGTGACTGATTTCATTAGATATTTCCTGGAATTCTGATGAGACGCAGAAATGAGTGGAGCTGGAATAGGTTTGTTTTGAATAATATCTCACTGAAGGCAATGGTGGATGTGTCGCTGAATTTCGTGGATCGGTTGAATTTTGAAATGAACATGGTTGGTTGATTGATTAGTGTTCTTGAGTTTGAGGGCTTGCGCACAAACCATTGAAATGCCGTGTTCTTATTTTGAGAGGCGGTATAGTGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10936#1 ------------------------------------------------------------ consensus_10936#3 ------------------------------------------------------------ consensus_10936#0 ATCCGNNAAATCGATAATACGACTCACTAAGGATCCGTCGACATCTGTACCTTTGTTTAC 60 consensus_10936#2 ------------------------------------------------------------ consensus_10936#1 ------------------------------------------------------------ consensus_10936#3 ------------------------------------------------------------ consensus_10936#0 GCGGCGACCCGACCAACCTCAAAGCTAGGGTAATGGCCGTTCTAAAGCTGTTATGCCCGT 120 consensus_10936#2 ------------------------------------------------------------ consensus_10936#1 --------------------------------------TATGTATTTGAGTAATAAATAA 22 consensus_10936#3 ------------------------------------------------------ACAAAA 6 consensus_10936#0 TATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGGACCCAAAG 180 consensus_10936#2 -----------------------------------------GAATTTAATCACTAAAAAG 19 * * consensus_10936#1 ATGCTTTCAT--CATAAATAAATACGTAATCTTTTCAGATGTACCTGCATCTCAGAGTTG 80 consensus_10936#3 CCACTTCTCA--TATTAGTGAAAACGAGCTCTCTAGTGAC-TGATTTCATTAGATATTTC 63 consensus_10936#0 TTACTGACAAAGTGTTTTTCGATATTGAAGTTGATGGAAAACCACTTGGTCGAATAATTA 240 consensus_10936#2 TTTTTGTTAAT-TGTTTAT-GACGGCATATAAGTTGTTACACAAACTAATCTC-TAGCTT 76 * * * * * * * * consensus_10936#1 ATGTTCACTCTAGGGACTCGAACCCAGTACCTTTCG----CTTCAAACGCCATCGCGTTA 136 consensus_10936#3 CTGGA-ATTCTGATGAGACGCAGA-AATGAGTGGAG----CTG-GAATAGGTTTGTTTTG 116 consensus_10936#0 TCGGATTGTTTGGTAAAACAGTGCCTAAGACAGTGGAAAATTTCAAACAACTTTCAATTG 300 consensus_10936#2 ATGTCAGATGTAGCTAACCGTCAATTAGTGGAAATAACATCTTCGAAT--TCATGAATGA 134 * * * * * * ** * consensus_10936#1 TCCACTCAGCTACTGA-GTCATAAATGATT-ACAAT-CTGTA----TTGTTTTAGTAGCC 189 consensus_10936#3 AATAATATCTCACTGAAGGCAATGGTGGAT-GTGTCGCTGAA----TTTCGTGGATCGGT 171 consensus_10936#0 GCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTA 360 consensus_10936#2 AATTGCTATCGATTGTTAAGTAGAGTGCT--GTATTACAATTTTCTTATTGTTAATTACA 192 * * ** * * consensus_10936#1 TGAGATTTAATTCCAGTTGGATTGTATG-TTGATCGTTTCTGATTGTTATTGAGATATAC 248 consensus_10936#3 TGAATTTTGAAATGAACATGGTTGGTTGATTGATTAGTGTTCTTGAGTTTGAGGGCTTGC 231 consensus_10936#0 TTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTA 420 consensus_10936#2 TGAAATCAATCG----ATCAACTAGATA-CTAGGAAGTCAAGTCAACTATGACAACTATT 247 * * * * * * consensus_10936#1 ATATA---GGCTATCGTCGTCGTA-TATAACTATTGAATTAACTGGCGTTAGTGAATAAT 304 consensus_10936#3 GCACA---AACCATTGAAATGCCG-TGTTCTTATT---TTGAGAGGCGGTAT--AGTGGT 282 consensus_10936#0 GTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGT 480 consensus_10936#2 ATTGTTA-GGCGATAATTACTCAA-TCTAACCTGAA---TAACTGTCACGGTAAGAATCC 302 * ** * * * consensus_10936#1 GGAATGAAATAAGTCGTGT--AAA--TATGAGAATGGATTTCGAATATGTATATTTTGTA 360 consensus_10936#3 GAAGTTGGTGAAGGCGTATTTGAA--GGTGAGA-CGGAAGCCGAGTCG------------ 327 consensus_10936#0 GGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCG 540 consensus_10936#2 ATTCATAATCAATTTGACTACAGAGTTAAATACATAAAATTCCAATACTGATTTTTCCAA 362 * * * * consensus_10936#1 CAA-----TCATTAATCCAGGAAGACGATTAAAGGAGCGGAACAAAGCGAAACGAAATAA 415 consensus_10936#3 ------------------------------------------------------------ consensus_10936#0 TGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGA 600 consensus_10936#2 AGTAA---CTATTTACTTGTTTAACGTATTACTTACTTACTTACTTACTCACACATGTTA 419 consensus_10936#1 TGCGCGTTGGAGGAGGTACATAAGAACACATTACGTCGGGAAATAGAAGCAGATATGAAA 475 consensus_10936#3 ------------------------------------------------------------ consensus_10936#0 ACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCA 660 consensus_10936#2 CCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCAGGGCA 479 consensus_10936#1 AGGATGAATAACAACTGGAACGAACTGGAAAGGATTGACCAGGACAAGGTTGGATGGAGA 535 consensus_10936#3 ------------------------------------------------------------ consensus_10936#0 TCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTG 720 consensus_10936#2 --ATCCTTTCCAGTTCCTTCCAGTTGTTATTCATTCTGTTCATATCTGCTTCTATTTCCT 537 consensus_10936#1 ATGCTGGTGAGCGGCCTATGCTCCTCCACGAGGGGTAA---------------------- 573 consensus_10936#3 ------------------------------------------------------------ consensus_10936#0 ATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTC 780 consensus_10936#2 GGCTAACCAGAAAAA--------------------------------------------- 552 consensus_10936#1 -------------- consensus_10936#3 -------------- consensus_10936#0 GTGAATATAATTTA 794 consensus_10936#2 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||