Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 10936 cluster # 10936       Sequences # 26       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10936#0 length = 794 sequences # 23  
consensus_10936#1 length = 573 sequences # 1  
consensus_10936#2 length = 552 sequences # 1  
consensus_10936#3 length = 327 sequences # 1  

consensusID : consensus_10936#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 23
consensus length = 794
fasta sequence
                              [ATCCGNNAAATCGATAATACGACTCACTAAGGATCCGTCGACATCTGTACCTTTGTTTACGCGGCGACCCGACCAACCTCAAAGCT-AGGGTAATGGCC-GTTCTAAAGCTGTTATGCCCGTTATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG-ACCCAAAGTTAC-TGACAA-AGTGT-TTT-TCGATA-TTGA-AGTTGATGG-AAAAC-CACT-TGGT-CGAATAATTATCGGATTGTTTGGTAAAA-CAGTGCCTAAGACAGTGGAAAATTTCAAACAA-CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTCGTGAATATAATTTA]

[+] EMBL SM30874              [ATCCGNNAAATCGATAATACGACTCACTAAGGATCCGTCGACATCTGTACCTTTGTTTACGCGGCGACCCGACCAACCTCAAAGCT AGGGTAATGGCC GTTCTAAAGCCGTTATGCCCGTTATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG ACCCAAAGTTAC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAAAC CACT TGCT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTCGTGAATATAATTTA]
[+] EMBL AI976137             [                                                                   CCCGACCAACCTCAAAGCT AGGGTAATGGCC GTTCTAAAGCTGTTATGCCCGTTATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG ACCCAAAGTTAC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAAAC CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTT                                                                                                                                                                                          ]
[-] EMBL CD142653             [                                                                          acCCTCAAAGCTAAGGGAAATGGCCGGTTTAAAAGCTGTTATCCCGGTTATTACTACTGTTTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG ACCAAAAGTACC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAACC CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAACCAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCTCGATGGAACTGGAGGTTTTAGTAGTTcta                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD137155             [                                                                                                                                                      aCTTATTCGCAGGGAAGCGAATGGTACCCAAAGTTACGTGACAATAGTGTCTTTATTGATATTTGAGAGGAGAAGGTAAAACGCACTATGGTACGAATAATTATCGAATTGTTTGGAAAAA CAGTGCCTAAGACAGAGTGAAATGTCAGACAA CTTTCAATTGGCACTCAACTGAAGGAGGGTCGAACTGCTTCATATAAAGGACGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTAACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGATAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTNGTAAGAGCATCAAGATAGCCAGCTGCGGCCACATTCCCGT GAAATACCCTTCTCGGT ACGAACTCTGATGCTGTCG                                                                 ]
[-] EMBL CD164177             [                                                                                                                                                                             G ACCCAAAGTTAC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAAAC CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCA                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD156269             [                                                                                                                                                                                                                                         CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTC                                                                                                                                                                                                                        ]
[-] EMBL CD156460             [                                                                                                                                                                                                                                         CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAGGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTC                                                                                                                                                                                                                        ]
[+] EMBL CD137086             [                                                                                                                                                                                                                                                 T CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG                                                                 ]
[+] EMBL CD137010             [                                                                                                                                                                                                                                                 T CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG                                                                 ]
[-] EMBL CD136650             [                                                                                                                                                                                                                                                    GAATAAATATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGG AAATTTC AACAACCTTTCAATTGGCACTCAACTGAAGGATGGTCGANCTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA                                                                ]
[-] EMBL CD138463             [                                                                                                                                                                                                                                                                                                                                                      CTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCTCGATGGAACTGGAGGTTNTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTG                                                                                                                                                                          ]
[+] EMBL CD137056             [                                                                                                                                                                                                                                                                                                                                                    ttCTTCATA AAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGCCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGCGAAGACCTCGCGGTT                                                                                                                                                                                                                                              ]
[-] EMBL AI067529             [                                                                                                                                                                                                                                                                                                                                                                 GGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCAATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTCGTGAATATAATTTA]
[+] EMBL CD136925             [                                                                                                                                                                                                                                                                                                                                                                      CACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTCCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTTTTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG                                                                 ]
[+] EMBL CD137104             [                                                                                                                                                                                                                                                                                                                                                                      CACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTGCTCTTACCAACAAGGATCTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAGTTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG                                                                 ]
[+] EMBL CD137013             [                                                                                                                                                                                                                                                                                                                                                                      CACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG                                                                 ]
[-] EMBL CD137281             [                                                                                                                                                                                                                                                                                                                                                                       ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAATCCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGTCCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAATCGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA                                                                ]
[+] EMBL CD137145             [                                                                                                                                                                                                                                                                                                                                                                       ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCTCAAACCACGATGGCACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACTTTGTTAGACAGATTGAAAGCGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG                                                                 ]
[+] EMBL CD136942             [                                                                                                                                                                                                                                                                                                                                                                       ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCCTCTCGGTAACGAACTCTGATGCTGTCG                                                                 ]
[+] EMBL CD136987             [                                                                                                                                                                                                                                                                                                                                                                       ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGAC                                                                                                                                                                                                                                                       ]
[-] EMBL CD137221             [                                                                                                                                                                                                                                                                                                                                                                        CTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTCCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA                                                                ]
[-] EMBL CD136637             [                                                                                                                                                                                                                                                                                                                                                                        CTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAAT    GTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA                                                                ]
[-] EMBL CD136712             [                                                                                                                                                                                                                                                                                                                                                                                                                     TCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA                                                                ]


>consensus_10936#0 ATCCGNNAAATCGATAATACGACTCACTAAGGATCCGTCGACATCTGTACCTTTGTTTAC GCGGCGACCCGACCAACCTCAAAGCTAGGGTAATGGCCGTTCTAAAGCTGTTATGCCCGT TATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGGACCCAAAG TTACTGACAAAGTGTTTTTCGATATTGAAGTTGATGGAAAACCACTTGGTCGAATAATTA TCGGATTGTTTGGTAAAACAGTGCCTAAGACAGTGGAAAATTTCAAACAACTTTCAATTG GCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTA TTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTA GTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGT GGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCG TGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGA ACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCA TCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTG ATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTC GTGAATATAATTTA



consensusID : consensus_10936#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence
                              [TATGTATTTGAGTAATAAATAAATGCTTTCATCATAAATAAATACGTAATCTTTTCAGATGTACCTGCATCTCAGAGTTGATGTTCACTCTAGGGACTCGAACCCAGTACCTTTCGCTTCAAACGCCATCGCGTTATCCACTCAGCTACTGAGTCATAAATGATTACAATCTGTATTGTTTTAGTAGCCTGAGATTTAATTCCAGTTGGATTGTATGTTGATCGTTTCTGATTGTTATTGAGATATACATATAGGCTATCGTCGTCGTATATAACTATTGAATTAACTGGCGTTAGTGAATAATGGAATGAAATAAGTCGTGTAAATATGAGAATGGATTTCGAATATGTATATTTTGTACAATCATTAATCCAGGAAGACGATTAAAGGAGCGGAACAAAGCGAAACGAAATAATGCGCGTTGGAGGAGGTACATAAGAACACATTACGTCGGGAAATAGAAGCAGATATGAAAAGGATGAATAACAACTGGAACGAACTGGAAAGGATTGACCAGGACAAGGTTGGATGGAGAATGCTGGTGAGCGGCCTATGCTCCTCCACGAGGGGTAA]

[+] EMBL CD077238             [TATGTATTTGAGTAATAAATAAATGCTTTCATCATAAATAAATACGTAATCTTTTCAGATGTACCTGCATCTCAGAGTTGATGTTCACTCTAGGGACTCGAACCCAGTACCTTTCGCTTCAAACGCCATCGCGTTATCCACTCAGCTACTGAGTCATAAATGATTACAATCTGTATTGTTTTAGTAGCCTGAGATTTAATTCCAGTTGGATTGTATGTTGATCGTTTCTGATTGTTATTGAGATATACATATAGGCTATCGTCGTCGTATATAACTATTGAATTAACTGGCGTTAGTGAATAATGGAATGAAATAAGTCGTGTAAATATGAGAATGGATTTCGAATATGTATATTTTGTACAATCATTAATCCAGGAAGACGATTAAAGGAGCGGAACAAAGCGAAACGAAATAATGCGCGTTGGAGGAGGTACATAAGAACACATTACGTCGGGAAATAGAAGCAGATATGAAAAGGATGAATAACAACTGGAACGAACTGGAAAGGATTGACCAGGACAAGGTTGGATGGAGAATGCTGGTGAGCGGCCTATGCTCCTCCACGAGGGGTAA]


>consensus_10936#1 TATGTATTTGAGTAATAAATAAATGCTTTCATCATAAATAAATACGTAATCTTTTCAGAT GTACCTGCATCTCAGAGTTGATGTTCACTCTAGGGACTCGAACCCAGTACCTTTCGCTTC AAACGCCATCGCGTTATCCACTCAGCTACTGAGTCATAAATGATTACAATCTGTATTGTT TTAGTAGCCTGAGATTTAATTCCAGTTGGATTGTATGTTGATCGTTTCTGATTGTTATTG AGATATACATATAGGCTATCGTCGTCGTATATAACTATTGAATTAACTGGCGTTAGTGAA TAATGGAATGAAATAAGTCGTGTAAATATGAGAATGGATTTCGAATATGTATATTTTGTA CAATCATTAATCCAGGAAGACGATTAAAGGAGCGGAACAAAGCGAAACGAAATAATGCGC GTTGGAGGAGGTACATAAGAACACATTACGTCGGGAAATAGAAGCAGATATGAAAAGGAT GAATAACAACTGGAACGAACTGGAAAGGATTGACCAGGACAAGGTTGGATGGAGAATGCT GGTGAGCGGCCTATGCTCCTCCACGAGGGGTAA



consensusID : consensus_10936#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence
                              [GAATTTAATCACTAAAAAGTTTTTGTTAATTGTTTATGACGGCATATAAGTTGTTACACAAACTAATCTCTAGCTTATGTCAGATGTAGCTAACCGTCAATTAGTGGAAATAACATCTTCGAATTCATGAATGAAATTGCTATCGATTGTTAAGTAGAGTGCTGTATTACAATTTTCTTATTGTTAATTACATGAAATCAATCGATCAACTAGATACTAGGAAGTCAAGTCAACTATGACAACTATTATTGTTAGGCGATAATTACTCAATCTAACCTGAATAACTGTCACGGTAAGAATCCATTCATAATCAATTTGACTACAGAGTTAAATACATAAAATTCCAATACTGATTTTTCCAAAGTAACTATTTACTTGTTTAACGTATTACTTACTTACTTACTTACTCACACATGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCAGGGCAATCCTTTCCAGTTCCTTCCAGTTGTTATTCATTCTGTTCATATCTGCTTCTATTTCCTGGCTAACCAGAAAAA]

[+] EMBL CD090004             [GAATTTAATCACTAAAAAGTTTTTGTTAATTGTTTATGACGGCATATAAGTTGTTACACAAACTAATCTCTAGCTTATGTCAGATGTAGCTAACCGTCAATTAGTGGAAATAACATCTTCGAATTCATGAATGAAATTGCTATCGATTGTTAAGTAGAGTGCTGTATTACAATTTTCTTATTGTTAATTACATGAAATCAATCGATCAACTAGATACTAGGAAGTCAAGTCAACTATGACAACTATTATTGTTAGGCGATAATTACTCAATCTAACCTGAATAACTGTCACGGTAAGAATCCATTCATAATCAATTTGACTACAGAGTTAAATACATAAAATTCCAATACTGATTTTTCCAAAGTAACTATTTACTTGTTTAACGTATTACTTACTTACTTACTTACTCACACATGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCAGGGCAATCCTTTCCAGTTCCTTCCAGTTGTTATTCATTCTGTTCATATCTGCTTCTATTTCCTGGCTAACCAGAAAAA]


>consensus_10936#2 GAATTTAATCACTAAAAAGTTTTTGTTAATTGTTTATGACGGCATATAAGTTGTTACACA AACTAATCTCTAGCTTATGTCAGATGTAGCTAACCGTCAATTAGTGGAAATAACATCTTC GAATTCATGAATGAAATTGCTATCGATTGTTAAGTAGAGTGCTGTATTACAATTTTCTTA TTGTTAATTACATGAAATCAATCGATCAACTAGATACTAGGAAGTCAAGTCAACTATGAC AACTATTATTGTTAGGCGATAATTACTCAATCTAACCTGAATAACTGTCACGGTAAGAAT CCATTCATAATCAATTTGACTACAGAGTTAAATACATAAAATTCCAATACTGATTTTTCC AAAGTAACTATTTACTTGTTTAACGTATTACTTACTTACTTACTTACTCACACATGTTAC CCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCAGGGCAA TCCTTTCCAGTTCCTTCCAGTTGTTATTCATTCTGTTCATATCTGCTTCTATTTCCTGGC TAACCAGAAAAA



consensusID : consensus_10936#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence
                              [ACAAAACCACTTCTCATATTAGTGAAAACGAGCTCTCTAGTGACTGATTTCATTAGATATTTCCTGGAATTCTGATGAGACGCAGAAATGAGTGGAGCTGGAATAGGTTTGTTTTGAATAATATCTCACTGAAGGCAATGGTGGATGTGTCGCTGAATTTCGTGGATCGGTTGAATTTTGAAATGAACATGGTTGGTTGATTGATTAGTGTTCTTGAGTTTGAGGGCTTGCGCACAAACCATTGAAATGCCGTGTTCTTATTTTGAGAGGCGGTATAGTGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCG]

[+] EMBL CD161634             [ACAAAACCACTTCTCATATTAGTGAAAACGAGCTCTCTAGTGACTGATTTCATTAGATATTTCCTGGAATTCTGATGAGACGCAGAAATGAGTGGAGCTGGAATAGGTTTGTTTTGAATAATATCTCACTGAAGGCAATGGTGGATGTGTCGCTGAATTTCGTGGATCGGTTGAATTTTGAAATGAACATGGTTGGTTGATTGATTAGTGTTCTTGAGTTTGAGGGCTTGCGCACAAACCATTGAAATGCCGTGTTCTTATTTTGAGAGGCGGTATAGTGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCG]


>consensus_10936#3 ACAAAACCACTTCTCATATTAGTGAAAACGAGCTCTCTAGTGACTGATTTCATTAGATAT TTCCTGGAATTCTGATGAGACGCAGAAATGAGTGGAGCTGGAATAGGTTTGTTTTGAATA ATATCTCACTGAAGGCAATGGTGGATGTGTCGCTGAATTTCGTGGATCGGTTGAATTTTG AAATGAACATGGTTGGTTGATTGATTAGTGTTCTTGAGTTTGAGGGCTTGCGCACAAACC ATTGAAATGCCGTGTTCTTATTTTGAGAGGCGGTATAGTGGTGAAGTTGGTGAAGGCGTA TTTGAAGGTGAGACGGAAGCCGAGTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#0      ATCCGNNAAATCGATAATACGACTCACTAAGGATCCGTCGACATCTGTACCTTTGTTTAC 60
consensus_10936#2      ------------------------------------------------------------
                                                                                   

consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#0      GCGGCGACCCGACCAACCTCAAAGCTAGGGTAATGGCCGTTCTAAAGCTGTTATGCCCGT 120
consensus_10936#2      ------------------------------------------------------------
                                                                                   

consensus_10936#1      --------------------------------------TATGTATTTGAGTAATAAATAA 22
consensus_10936#3      ------------------------------------------------------ACAAAA 6
consensus_10936#0      TATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGGACCCAAAG 180
consensus_10936#2      -----------------------------------------GAATTTAATCACTAAAAAG 19
                                                                               * * 

consensus_10936#1      ATGCTTTCAT--CATAAATAAATACGTAATCTTTTCAGATGTACCTGCATCTCAGAGTTG 80
consensus_10936#3      CCACTTCTCA--TATTAGTGAAAACGAGCTCTCTAGTGAC-TGATTTCATTAGATATTTC 63
consensus_10936#0      TTACTGACAAAGTGTTTTTCGATATTGAAGTTGATGGAAAACCACTTGGTCGAATAATTA 240
consensus_10936#2      TTTTTGTTAAT-TGTTTAT-GACGGCATATAAGTTGTTACACAAACTAATCTC-TAGCTT 76
                           *         *   *  *                *          *     *  * 

consensus_10936#1      ATGTTCACTCTAGGGACTCGAACCCAGTACCTTTCG----CTTCAAACGCCATCGCGTTA 136
consensus_10936#3      CTGGA-ATTCTGATGAGACGCAGA-AATGAGTGGAG----CTG-GAATAGGTTTGTTTTG 116
consensus_10936#0      TCGGATTGTTTGGTAAAACAGTGCCTAAGACAGTGGAAAATTTCAAACAACTTTCAATTG 300
consensus_10936#2      ATGTCAGATGTAGCTAACCGTCAATTAGTGGAAATAACATCTTCGAAT--TCATGAATGA 134
                         *     * *    *  *                      *   **          *  

consensus_10936#1      TCCACTCAGCTACTGA-GTCATAAATGATT-ACAAT-CTGTA----TTGTTTTAGTAGCC 189
consensus_10936#3      AATAATATCTCACTGAAGGCAATGGTGGAT-GTGTCGCTGAA----TTTCGTGGATCGGT 171
consensus_10936#0      GCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTA 360
consensus_10936#2      AATTGCTATCGATTGTTAAGTAGAGTGCT--GTATTACAATTTTCTTATTGTTAATTACA 192
                                  *  *          **                   *        *    

consensus_10936#1      TGAGATTTAATTCCAGTTGGATTGTATG-TTGATCGTTTCTGATTGTTATTGAGATATAC 248
consensus_10936#3      TGAATTTTGAAATGAACATGGTTGGTTGATTGATTAGTGTTCTTGAGTTTGAGGGCTTGC 231
consensus_10936#0      TTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTA 420
consensus_10936#2      TGAAATCAATCG----ATCAACTAGATA-CTAGGAAGTCAAGTCAACTATGACAACTATT 247
                       * *  *                *       *                  *          

consensus_10936#1      ATATA---GGCTATCGTCGTCGTA-TATAACTATTGAATTAACTGGCGTTAGTGAATAAT 304
consensus_10936#3      GCACA---AACCATTGAAATGCCG-TGTTCTTATT---TTGAGAGGCGGTAT--AGTGGT 282
consensus_10936#0      GTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGT 480
consensus_10936#2      ATTGTTA-GGCGATAATTACTCAA-TCTAACCTGAA---TAACTGTCACGGTAAGAATCC 302
                                 * **           *             * *                  

consensus_10936#1      GGAATGAAATAAGTCGTGT--AAA--TATGAGAATGGATTTCGAATATGTATATTTTGTA 360
consensus_10936#3      GAAGTTGGTGAAGGCGTATTTGAA--GGTGAGA-CGGAAGCCGAGTCG------------ 327
consensus_10936#0      GGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCG 540
consensus_10936#2      ATTCATAATCAATTTGACTACAGAGTTAAATACATAAAATTCCAATACTGATTTTTCCAA 362
                                                            *   * * *              

consensus_10936#1      CAA-----TCATTAATCCAGGAAGACGATTAAAGGAGCGGAACAAAGCGAAACGAAATAA 415
consensus_10936#3      ------------------------------------------------------------
consensus_10936#0      TGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGA 600
consensus_10936#2      AGTAA---CTATTTACTTGTTTAACGTATTACTTACTTACTTACTTACTCACACATGTTA 419
                                                                                   

consensus_10936#1      TGCGCGTTGGAGGAGGTACATAAGAACACATTACGTCGGGAAATAGAAGCAGATATGAAA 475
consensus_10936#3      ------------------------------------------------------------
consensus_10936#0      ACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCA 660
consensus_10936#2      CCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCAGGGCA 479
                                                                                   

consensus_10936#1      AGGATGAATAACAACTGGAACGAACTGGAAAGGATTGACCAGGACAAGGTTGGATGGAGA 535
consensus_10936#3      ------------------------------------------------------------
consensus_10936#0      TCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTG 720
consensus_10936#2      --ATCCTTTCCAGTTCCTTCCAGTTGTTATTCATTCTGTTCATATCTGCTTCTATTTCCT 537
                                                                                   

consensus_10936#1      ATGCTGGTGAGCGGCCTATGCTCCTCCACGAGGGGTAA---------------------- 573
consensus_10936#3      ------------------------------------------------------------
consensus_10936#0      ATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTC 780
consensus_10936#2      GGCTAACCAGAAAAA--------------------------------------------- 552
                                                                                   

consensus_10936#1      --------------
consensus_10936#3      --------------
consensus_10936#0      GTGAATATAATTTA 794
consensus_10936#2      --------------
                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)