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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10952#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1129 fasta sequence
[ATATTTACAATATGTACAAAGCAGGAGGAATGTTTACTGCTTTTTGCTGCTGTTATTAAGCATGGTAAACTTGGTCATTGGCTTGCCACGTATGCCACACGTCCCAACACCTACACGACCGTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGCAAAAGAAACATGCTTGCGATGAACGTGATGTATAGAGGTCAAGTTTTGTATATTAACAGACATCTCAGGCTTGTTTAAACCAAAATATTCACTCACGATTAATTTGTCCACGGACTGTTGATTGTTGTCATTCCAATTATCAAGCGAACGGCTTCAAAGTACCATACGTCTCGTGCTTGAATGTATACAA-AAATTTAACGGCAGCCGCAAATGGTAAGAGAGTTAGGACAAACCAATCTTTAATTAGGTATTTTCTAGC-TAAAACGAAGAGACCTAATCATGTAGACAAGTTTTATTAAGATTTTTCATAAGGAATATGAAAAATTAAAGTCCCATAAAGGACTGATAACCCTAAGGCTGCTATAGTTGTTGGGCAACATGTCAGTTCCCTATAAC-CTAAGAGAAACT-TATAAGCAATCTTAGTGAG-CCTACCAAGTGGACAAGTACAAAGATGTAAAAATATAGCAATAACAGACCT-GGCATACGTCCGTTGTATCATACATATCGAAATTCACGACGCAGCTGAC-ATCCCCAAGAAATTCAAGTATTGTAGCTCGGTAGTAAA-GTTTGTCACGGGAGCACATGGCCATGCACTGGTCGCCCACATTCCACGACACTTCTGGTGTATCAGATGTTCTACCCAGTAATTCAAGTGAGAGTTTGATGACTTCCTCGAGATCTCGTTTGAGCTGGAGAAGTTCCTCATTTTCAGGATCCAGCTCAAGAGCTGCCTCTACCTGCTGAAGTTGCAACTTATGGTTAAGAAGA]
[-] EMBL AW017438 [ATATTTACAATATGTACAAAGCAGGAGGAATGTTTACTGCTTTTTGCTGCTGTTATTAAGCATGGTAAACTTGGTCATTGGCTTGCCACGTATGCCACACGTCCCAACACCTACACGACCGTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGCAAAAGAAACATGCTTGCGATGAACGTGATGTATAGAGGTCAAGTTTTGTATATTAACAGACATCTCAGGCTTGTTTAAACCAAAATATTCACTCACGATTAATTTGTCCACGGACTGTTGATTGT ]
[-] EMBL CD184148 [ CACCTACACGACCGTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGCAAAAGAAACATGCTTGCGATGAACGTGATGTATAGAGGTCAAGTTTTGTATATTAACAGACATCTCAGGCTTGTTTAAACCAAAATATTCACTCACGATTAATTTG ]
[+] EMBL CD063924 [ GTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTC TTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTT ]
[+] EMBL CD071084 [ AGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAGCTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGCAAAAGAAACATGCTTGCGATGAACGTGATGTATAGAGGTCAAGTTTTGTATATTAACAGACATCTCAGGCTTGTTTAAACCAAAATATTCACTCACGATTAATTTGTCCACGGACTGTTGATTGTTGTCATTCCAATTATCAAGCGAACGGCTTCAAAGTACCATACGTCTCGTGCTTGAATGTATACAA AAATTTAACGGCAGCCGCAAATGGTAAAAGAGTTAGGAACAACCAATCTTTAATTAGGTATTTTCTAGC TAAna ]
[-] EMBL CD199915 [ GGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGCAAAAGAAACATGCTTGCGATGAACGTGATGTATAGAGGTCAAGTTTTGTATATTAACAGACATCTCAGGCTTGTTTAAACCAAAATATTCACTCACGATTAATTTGTCCACGGACTGTTGATTGTTGTCATTCCAATTATCAAGCGAACGGCTTCAAAGTACCATACGT ]
[+] EMBL CD170695 [ TGATGTATAGAGGTCAAGTTTTGTATATTAACAGACATCTCAGGCTTGTTTAAACCAAAATATTCACTCACGATTAATTTGTCCACGGACTGTTGATTGTTGTCATTCCAATTATCAAGCGAACGGCTTCAAAGTACCATACGTCTCGTGCTTGAATGTATACAA AAATTTAACGGCAGCCGCAAATGGTAAGAGAGTTAGGACAAACCAATCTTTAATTAGGTATTTTCTAGC TAAAACGAAGAGACCTAATCATGTAGACAAGTTTTATTAAGATTTTTCATAAGGAATATGAAAAATTAAAGTCCCATAAAGGACTGATAACCCTAAGGCTGCTATAGTTGTTGGGCAACATGTCAGTTCCCTATAAC CTAAGAGAAACT TATAAGCAATCTTAGTGAG CCTACCAAGTGGACAAGTACAAAGATGTAAAAATATAGCAATA ]
[-] EMBL CD114837 [ CCATACGTCTCGTGCTTGAATGTATACAA AAATTTAACGGCAGCCGCAAATGGTAAGAGAGTTAGGACAAACCAATCTTTAATAAGGTATTTTCTAGCATAAAACGAAGAGACCTAATCATGTAGACAAGTTTTATTAAGATTTTTCATAAGGAATATGAGAAATTAAAGTCCCATAAAGGACTGATAACCCTAAGGCTGCTATAGTTGTTGGGCAACATGTCAGTTCCCTATAACTCTAAGAGAAACT TATAAGCAATCTTAGTGAG CCTACCAAGTGGACAAGTACAAAGATGTAAAAATATAGCAATAACAGACGT GGCATACGTCCGTTGTATCATACATATCGACATTCACGACGCAGCTGACAATCCCCAAGAAATTCAAGTATTGTAGCTCGGTAGTAAACGTATGTCACGGGAGC ]
[+] EMBL CD114839 [ TGCTTGAATGTATACAACAAATTTAACGGCAGCCGCAAATGGTAAGAGAGTTAGGACAAACCAATCTTTAATTAGGTATTTTCTAGC TTAAACGAAGAGACCTAATCATGTAGACTAGTTTTATTAAGATTTTTCATAAGGAATATGAAAAATTAAAGTCCCATAAAGGACTGATAACCCTAAGGCTGCTATAGTTGTTGGGCAACATGTCAGTTCCCTATAAC CTAAGAGAAACT TATAAGCAATCTTAGTGAG CCTACCAAGTGGACAAGTACAAAGATGTAAAAATATAGCAATAACAGACCT GGCATACGTCCGTTGTATCATACATATCGAAATTCACGACGCAGCTGAC ATCCCCAAGAAATTCAAGTATTGTAGCTCGGTAGTAAA GTTGTTCACGGGA ]
[+] EMBL CD120925 [ AA AAATTTAACGGCAGCCGCAAATGGTAAGAGAGTTAGGACAAACCAATCTTTAATTAGGTATTTTCTAGC TAAAACGAAGAGACCTAATCATGTAGACAAGTTTTATTAAGATTTTTCATAAGGAATATGAAAAATTAAAGTCCCATAAAGGACTGATAACCCTAAGGCTGCTATAGTTGTTGGGCAACATGTCAGTTCCCTATAAC CTAAGAGAAACT TATAAGCAATCTTAGTGAG CCTACCAAGTGGACAAGTACAAAGATGTAAAAATATAGCAATAACAGACCT GGCATACGTCCGTTGTATCATACATATCGAAATTCACGACGCAGCTGAC ATCCCCAAGAAATTCAAGTATTGTAGCTCGGTAGTAAA GTTTGTCACGGG ]
[-] EMBL CD170720 [ A AAATTTAACGGCAGCCGCAAATGGTAAGAGAGTTAGGACAAACCAATCTTTAATTAGGTATTTTCTAGC TAAAACGAAGAGACCTAATCATGTAGACAAGTTTTATTAAGATTTTTCATAAGGAATATGAAAAATTAAAGTCCCATAAAGGACTGATAACCCTAAGGCTGCTATAGTTGTTGGGCAACATGTCAGTTCCCTATAAC CTAAGAGAAACT TATAAGCAATCTTAGTGAG CCTACCAAGTGGACAAGTACAAAGATGTAAAAATATAGCAATAACAGACCT GGCATACGTCCGTTGTATCATACATATCGAAATTCACGACGCAGCTGAC ATCCCCAAGAAATTCAGGTATTGTAGCTCGGTAGTAAA GTTTGTCACGGGA ]
[-] EMBL CD165326 [ nGGGCANCATGTCAGTTCCCTATANC CTAAGAGAGACTATA AAGCATTC TAGTGAGCCCTNCCAAGTGGACAAGTACAAAGATGTAAAAATATAGCAAT ACAGACCTGGGCATACGTCCGTTGTATCATACATATCGAAATTCACGACGCAGCTGAC ATCCNCAAGAAATTCAAGTATTGTAGCTCGGTAGTAAA GTTTGTCACGGGAGCACATGGCCATGCACTGGTCGCCCACATTCCACGACACTTCTGGTGTATCAGATGTTCTACCCAGTAATTCAAGTGAGAGTTTGATGACTTCCTCGAGATCTCGTTTGAGCTGGAGAAGTTCCTCATTTTCAGGATCCAGCTCAAGAGCTGCCTCTACCTGCTGAAGTTGCAACTTATGGTTAAGAAGA]
consensusID : consensus_10952#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 736 fasta sequence
[TTTTTTTTTTTTTTTTATTGAATAGAGGAAAAAAGGTTTGAAGTATATTTACAATATGTACAAAGCAGGAGGAATGTTTACTGCTTTTTGCTGCTGTTATTAAGCATGGTAAACTTGGTCATTGGCTTGCCACCTATGCCACACGTCCCAACACCTACACGACCGTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGGCATACGTCCGTTGTATCATACATATCGAAATTCACGACGCAGCTGACATCCCCAAGAAATTCAAGTATTGTAGCTCGGTAGTAAAGTTTGTCACGGGAGCACATGGCCATGCACTGGTCGCCCACATTCCACGACACTTCTGGTGTATCAGATGTTCTACCCAGTAATTCAAGTGAGAGTTTGATGACTTCCTCGAGATCTCGTTTGAGCTGGAGAAGTTCCTCATTTTCAGGATCCAGCTCAAGAGCTGCCTCTACCTGCTGAAGTTGCAACTTATGGTTAAGAAGATCCAGTTGTGGGTCATCGGACATCTTTGGAAAAAGAAACTGAT]
[+] EMBL AI395417 [TTTTTTTTTTTTTTTTATTGAATAGAGGAAAAAAGGTTTGAAGTATATTTACAATATGTACAAAGCAGGAGGAATGTTTACTGCTTTTTGCTGCTGTTATTAAGCATGGTAAACTTGGTCATTGGCTTGCCACCTATGCCACACGTCCCAACACCTACACGACCGTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCCTTTCGATGGCACCATTTTTTATGTCATGTTTT ]
[+] EMBL CD076012 [ AAAAAAGGTTTGAAGTATATTTACAATATGTACAAAGCAGGAGGAATGTTTACTGCTTTTTGCTGCTGTTATTAAACATGGTAAACTTGGTCATTGGCTTGCCACCTATGCCACACGTCCCAACACCTACACGACCGTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGGCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAAAAGACGTTGGTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGGCATACGTCCGTTGTATCATACATATCGAAATTCACGACGCAGCTGACATCCCCAAGAAATTCAAGTATTGTAGCTCGGTAGTAAAGTTTGTCACGGGAGCACATGGCCATGCACTGGTC ]
[-] EMBL CD082413 [ acAGG TTGCAGTATATTT CATNATGT CAANGCAGGAGGAATG TTACTGC TTTTGCTGCTGTCATTAAGCATGGTCAACTTGGTCATTGGCTTGCCACATATGCCACACGTCCCAACACCTACACGACCGTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGGCATACGTCCGTTGTATCATACATATCGAAATTCACGACGCAGCTGACATCCCCAAGAAATTCAAGTATTGTAGCTCGGTAGTAAAGTTTGTCACGGGAGCACATGGCCATGCACTGGTCGCCCACATTCCACGACACTTCTGGTGTATCAGATGTTCTACCCAGTAATTCAAGTGAGAGTTTGATGACTTCCTCGAGATCTCGTTTGAGCTGGAGAAGTTCCTCATTTTCAGGATCCAGCTCAAGAGCTGCCTCTACCTGCTGAAGTTGCAAGTTATGGTTAAGAAGATCAGGTTGTGGGTCATCGGACATC TTGGAAAAAG ]
[+] EMBL CD125583 [ TGCCACCTATGCCACACGTCCTATCACCTACACGACCGTCCGGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGA ]
[-] EMBL CD156322 [ AGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGGCATACGTCCGTTGTATCATACATATCGAAATTCACGACGCAGCTGACATCCCCAAGAAATTCAAGTATTGTAGCTCGGTAGTAAAGTTTGTCACGGGAGCACATGGCCATGCACTGGTCGCCCACATTCCACGACACTTCTGGTGTATCAGATGTTCTACCCAGTAATTCAAGTGAGAGTTTGATGACTTCCTCGAGATCTCGTTTGAGCTGGAGAAGTTCCTCATTTTCAGGATCCAGCTCAAGAGCTGCCTCT ]
[-] EMBL CD199813 [ GGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGGCATA ]
[-] EMBL CD200012 [ GGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGGCATA ]
[-] EMBL CD199883 [ GGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGGCATA ]
[+] EMBL CD132372 [ ATTCCACGACACTTCTGGTGTATCAGATGTTCTACCCAGTAATTCAAGTGAGAGTTTGATGACTTCCTCGAGATCTCGTTTGAGCTGGAGAAGTTCCTCATTTTCAGGATCCAGCTCAAGAGCTGCCTCTACCTGCTGAAGTTGCAACTTATGGTTAAGAAGATCCAGTTGTGGGTCATCGGACATCTTTGGAAA ]
[-] EMBL CD128555 [ TCAGATGTTCTACCCAGTAATTCAAGTGAGAGTTTGATGGCTTCCTCGAGATCTCGTTTGAGCTGGAGAAGTTCCTCATTTTCAGGATCCAGCTCAAGAGCTGCCTCTACCTGCTGAAGTTGCAACTTATGGTTAAGAAGATCCAGTTGTGGGTCATCGGACATCTTTGGAAAACAAAACTGAT]
consensusID : consensus_10952#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence
[TCATTCCAATTATCAAGCGAACGGCTTCAAAGTACCATACGTCTCGTGCTTGAATGTATACAAAAATTTAACGGCAGCCGCAAATGGTAAGAGAGTTAGGACAAACCAATCTTTAATTAGGTATTTTCTAGCTAAAACGAAGAGACCTAATCATGTAGACAAGTTTTATTAAGATTTTTCATAAGGAATATGAAAAATTAAAGTCCCATAAAGGACTGATAACCCTAAGGCTGCTATAGTTGTTGGGCAACATGTCAGTTCCCTATAACCAAGTGGACAAGTACAAAGATGTAAAAATATAGCAATAACAGAA]
[-] EMBL BG931911 [TCATTCCAATTATCAAGCGAACGGCTTCAAAGTACCATACGTCTCGTGCTTGAATGTATACAAAAATTTAACGGCAGCCGCAAATGGTAAGAGAGTTAGGACAAACCAATCTTTAATTAGGTATTTTCTAGCTAAAACGAAGAGACCTAATCATGTAGACAAGTTTTATTAAGATTTTTCATAAGGAATATGAAAAATTAAAGTCCCATAAAGGACTGATAACCCTAAGGCTGCTATAGTTGTTGGGCAACATGTCAGTTCCCTATAACCAAGTGGACAAGTACAAAGATGTAAAAATATAGCAATAACAGAA]
consensusID : consensus_10952#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence
[ATTTCACGAACGCCAGNNGACATTCCCCAAGAAATTTCAAGTATTGTAGGTTCGGTAGTAAAGTTTGTTCACGGGAGCACATGGCCCATGGCACTGGTTCGCCCACATTTCCACGACACTTTTGGNGTNTTCAGANNNTANAACCCNGTAATTTCAAGTGAGAGTTTGATGACTTCCCTCGAGATNTCGTTTGAGCTGGAGAAGTTTCCTCATTTTTCAGGATCCAGNTCAAGAGCTGCCTNTACCTGCTGAAGTTGCAACTTATGGTTAAGAAGATCCAGTTGTGGGT]
[-] EMBL AA559835 [ATTTCACGAACGCCAGNNGACATTCCCCAAGAAATTTCAAGTATTGTAGGTTCGGTAGTAAAGTTTGTTCACGGGAGCACATGGCCCATGGCACTGGTTCGCCCACATTTCCACGACACTTTTGGNGTNTTCAGANNNTANAACCCNGTAATTTCAAGTGAGAGTTTGATGACTTCCCTCGAGATNTCGTTTGAGCTGGAGAAGTTTCCTCATTTTTCAGGATCCAGNTCAAGAGCTGCCTNTACCTGCTGAAGTTGCAACTTATGGTTAAGAAGATCCAGTTGTGGGT]
consensusID : consensus_10952#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 276 fasta sequence
[GGCGACTCCAACCCGGGACCACCTATGCCACACGTCCCAACACCTACACGACCGTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTCTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCGGAGTCG-CGGCACGATTTTTTTATGTCATGTCTGCAGATTTAATTTAGGAAAGTATGAACTTACTTTTT]
[+] EMBL CD139544 [GGCGACTCCAACCCGGGACCACCTATGCCACACGTCCCAACACCTACACGACCGTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTCTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCGGAGTCG C ]
[-] EMBL CD092431 [ AGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTATCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTG TTTTAAATTTTCCTC TTTTCGATGGCACGATTTTTTTATGTCATGTCTGCAGATTTAATTTAGGAAAGTATGAACTTACTTTTT]
consensusID : consensus_10952#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence
[ACTACACCTCTTCACAGTCCACTCTCTCCATCGCCACACGTCCCAACACCTACACGACCGTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAAC]
[-] EMBL CD192047 [ACTACACCTCTTCACAGTCCACTCTCTCCATCGCCACACGTCCCAACACCTACACGACCGTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 -------------------------------------------------------TTTTT 5
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 ATATTTACAATATGTACAAAGCAGGAGGAATGTTTACTGCTTTTTGCTGCTGTTATTAAG 60
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 TTTTTTTTTTTATTGAATAGAGGAAAAAAGGTTTGAAGTATATTTACAATATGTACAAAG 65
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 CATGGTAAACTTGGTCATTGGCTTGCCACGTATGCCACACGTCCCAACACCTACACGACC 120
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 CAGGAGGAATGTTTACTGCTTTTTGCTGCTGTTATTAAGCATGGTAAACTTGGTCATTGG 125
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 GTCCAGAGCTTCAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTT 180
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 CTTGCCACCTATGCCACACGTCCCAACACCTACACGACCGTCCAGAGCTTCAGGAGAGGC 185
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 CTTGCTGAAATTAAGCCAACGATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTC 240
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 GAAGATACTTTTCTTTGTCTTTCCTGTCTTGATCATTTTCTTGCTGAAATTAAGCCAACG 245
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 CCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTC 300
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 ATTCTTCTCCTTTTCGCAAAACGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTT 305
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 ATGTTTTTTCTTTTTCACTATAGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTG 360
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 TTTAATTTTCTTCTTTTCGATGGCACGATTTTTTATGTCATGTTTTTTCTTTTTCACTAT 365
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 CAAAAGAAACATGCTTGCGATGAACGTGATGTATAGAGGTCAAGTTTTGTATATTAACAG 420
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 AGGAGTAACCGTCGTAACCGGCTTTAAATGACACAGCTGGCATACGTCCGTTGTATCATA 425
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 ACATCTCAGGCTTGTTTAAACCAAAATATTCACTCACGATTAATTTGTCCACGGACTGTT 480
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 -------GGCGACTC-CAACCCGGGACCACCTATGCCACACGTCCCAACACCTACA---C 49
consensus_10952#5 --ACTACACCTCTTCACAGTCCACTCTCTCCATCGCCACACGTCCCAACACCTACA---C 55
consensus_10952#1 CATATCGAAATTCACGA-CGC-AGCTGACAT-CCCCAAGAAATT-CAAGTATTGTA---G 478
consensus_10952#3 --------ATTTCACGAACGCCAGNNGACATTCCCCAAGAAATTTCAAGTATTGTA---G 49
consensus_10952#0 GATTGTTGTCATTCCAATTATCAAGCGAACGGCTTCAAAGTACCATACGTCTCGTGCTTG 540
consensus_10952#2 --------TCATTCCAATTATCAAGCGAACGGCTTCAAAGTACCATACGTCTCGTGCTTG 52
* * * *
consensus_10952#4 GACCGTC--CAGAGCTT---CAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTT 104
consensus_10952#5 GACCGTC--CAGAGCTT---CAGGAGAGGCGAAGATACTTTTCTTTGTCTTTCCTGTCTT 110
consensus_10952#1 -CTCGGTAGTAAAGTTTGT-CACGGGAGCACATGGCC-ATG-CACTGGT-CGCCCACATT 533
consensus_10952#3 GTTCGGTAGTAAAGTTTGTTCACGGGAGCACATGGCCCATGGCACTGGTTCGCCCACATT 109
consensus_10952#0 AATGTATACAAAAATTTAACGGCAGCCGCAAATGGTAAGAGAGTTAGGACAAACCAATCT 600
consensus_10952#2 AATGTATACAAAAATTTAACGGCAGCCGCAAATGGTAAGAGAGTTAGGACAAACCAATCT 112
* * ** * * * * * *
consensus_10952#4 --GATCA----TTTTCTTGCTGAAATTAAGCCA-ACGATTCTTCT----CCTTCTCGCAA 153
consensus_10952#5 --GATCA----TTTTCTTGCTGAAATTAAGCCA-ACGATTCTTCT----CCTTTTCGCAA 159
consensus_10952#1 -CCACGA----CACTTCTGGTGTAT-CAGATGTTCTA-CCCAGTA----ATT-CAAGTGA 581
consensus_10952#3 TCCACGA----CACTTTTGGNGTNTTCAGANNNTANAACCCNGTA----ATTTCAAGTGA 161
consensus_10952#0 TTAATTAGGTATTTTCTAGCTAAAACGAAGAGACCTAATCATGTAGACAAGTTTTATTAA 660
consensus_10952#2 TTAATTAGGTATTTTCTAGCTAAAACGAAGAGACCTAATCATGTAGACAAGTTTTATTAA 172
* * * * * * *
consensus_10952#4 AA------CGACTCAATCTCAACTTCCCTCTGAAGAAGACGTTGTTTTTTAATTTTCTTC 207
consensus_10952#5 AA------CGACTCAATCTCAAC------------------------------------- 176
consensus_10952#1 GAGTTTGATGACTTC-C-TCGAGATCTCGTTTGAGCTGGAGAAGTT-CCTCATTTT-CAG 637
consensus_10952#3 GAGTTTGATGACTTC-CCTCGAGATNTCGTTTGAGCTGGAGAAGTTTCCTCATTTTTCAG 220
consensus_10952#0 GATTTTTCATAAGGAATATGAAAAATTAAAGTCCCATAAAGGACTGATAACCCTAAGGCT 720
consensus_10952#2 GATTTTTCATAAGGAATATGAAAAATTAAAGTCCCATAAAGGACTGATAACCCTAAGGCT 232
* * * *
consensus_10952#4 GG---AGTCGCGGCACGATTTTTTTATGTCATGTCTGC---------------------- 242
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 GATCCAGCTCAAGAGCTGCCTCTACCTGCTGAAGTTGC---------------------- 675
consensus_10952#3 GATCCAGNTCAAGAGCTGCCTNTACCTGCTGAAGTTGC---------------------- 258
consensus_10952#0 GCTATAGTTGTTGGGCAACATGTCAGTTCCCTATAACCTAAGAGAAACTTATAAGCAATC 780
consensus_10952#2 GCTATAGTTGTTGGGCAACATGTCAGTTCCCTATAACC---------------------- 270
consensus_10952#4 --------------A-GATTTAATTTAGGAAAGTATGAACTTACTTTTT----------- 276
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 --------------A-ACTTATGGTTAAGAAGATCCAGTTGTGGGTCATCGGACATCTTT 720
consensus_10952#3 --------------A-ACTTATGGTTAAGAAGATCCAGTTGTGGGT-------------- 289
consensus_10952#0 TTAGTGAGCCTACCAAGTGGACAAGTACAAAGATGTAAAAATATAGCAATAACAGACCTG 840
consensus_10952#2 --------------AAGTGGACAAGTACAAAGATGTAAAAATATAGCAATAACAGAA--- 313
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 GGAAAAAGAAACTGAT-------------------------------------------- 736
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 GCATACGTCCGTTGTATCATACATATCGAAATTCACGACGCAGCTGACATCCCCAAGAAA 900
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 ------------------------------------------------------------
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 TTCAAGTATTGTAGCTCGGTAGTAAAGTTTGTCACGGGAGCACATGGCCATGCACTGGTC 960
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 ------------------------------------------------------------
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 GCCCACATTCCACGACACTTCTGGTGTATCAGATGTTCTACCCAGTAATTCAAGTGAGAG 1020
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 ------------------------------------------------------------
consensus_10952#5 ------------------------------------------------------------
consensus_10952#1 ------------------------------------------------------------
consensus_10952#3 ------------------------------------------------------------
consensus_10952#0 TTTGATGACTTCCTCGAGATCTCGTTTGAGCTGGAGAAGTTCCTCATTTTCAGGATCCAG 1080
consensus_10952#2 ------------------------------------------------------------
consensus_10952#4 -------------------------------------------------
consensus_10952#5 -------------------------------------------------
consensus_10952#1 -------------------------------------------------
consensus_10952#3 -------------------------------------------------
consensus_10952#0 CTCAAGAGCTGCCTCTACCTGCTGAAGTTGCAACTTATGGTTAAGAAGA 1129
consensus_10952#2 -------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||