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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10957#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1569 fasta sequence
[CAATTTATGTTAAATTGGGAATTACACATATAAATCATTCGATTTTGTCGTCAAAATCAAAAAAACAAATAAAAGAATCGAACCGATCTCATGTTGTATGTTTAAAGGAATAGACAGAAAAAGATTGAACTTAATACGTAAAAGTGTATGTGTGTGTGCGTGTATGGGCATGGTAACAGAAAGAAGATTTATGAAGTGTATACGAGAGAAATAAGAAAAAGGAATCATATTTGAATGGTAGGCATTTGGTTTGTACAAACCTCAATAATAGTAACACCAGTGATAATATTAATAATAAGGCAGACAGTGTAGAGAGCAGACAACATTGTTATGCAGAAAGGCACTTCAAAATGAGAAAAAAAGAAACGACACAATATTAATGATTACTCTGTATTTTCAAGTGTGTATGTAACTGACTAATTATGGCTAATGATGGGAAGCAAGATTTGTGCAGTTTTATTTTCGTAAATGAAGAAAATTTAAACAAGAAACATAGTGTATATGAGAGGAATTAAGAAATGGACAATTTGAGAAGATGCGCAAAAATAGCACATACGCAT--ACACACACACGCGCAAACACATACATATGTATCTATGTGAAAGGATTCCGTTGATTAAATTAATGAATGATTTTATTTAGACTGATTTTATCGTTATTATTATTGTAAACAGTTTGTAATTGTGTTTTTTAAGGGATATCAATCACAAATGGGCTACCTGGTATATGTTGATCACCCCATTTAATTACTAAAAAGTGTTTACCACTTTGAAATACACGATATGATACAGTGTATTGATTATTGGATAAATGTTTGACAACCACTTCTTCAGATGCTTGTTTTGGACCACAGATACCAATCAGTAGAACATCGTTACCTGCTTGGCTGGCATCAACATTGAAATAATTCAGACGATCACGTTCTGCATATTTTAAACCAAGTCCTTGACAATTGACTAATTCAGGATGAGATCCTGAGCAGTGATTTTCTAGTTCAGCTGAAGCTGACACTCCTGTCATTGCTTTACCAACAGTTTCTAAAGTAACATTTGATTGACGATCTTCTGAACGAGAATCAGTAACTTCTGATCTAGGAGTTCCCGTAACTTCAACTCGAAATGGTGAACCACTTATATGAAAATTACCACCATATTTAATAGTTATTTCATAAACACCTGGAACAGTTGGTGTATAGAAAAATGCATAACCTTCATCATGTTCTTGACTAGTAACAGTTGCTTTACTTGGTCCATCTACTGTAACATTTAGAACACCACAACCAGCGTTAGTAGTATTAACGAAAAAGGAATTCTTTATATCAACTTTTCCTCTACGTAATCCTTCTCCAGAAGCACATACCATGCCTGGATCAGCAGCATGCTGACTAACTACAAGGCGGAATGGTGATCCTTGAATTGATTTATACACTGAATTTGGACCAAAACTCCATTCAGCTTTATTTGAATCCTTTATAGGCACAGAATGTACATGAACTAAATGTGGACCACCTTCACGTGGAACAAAACGGATTACAAATTGATCTGGATCAATAGGTTGAACAATAGCATCTT]
[+] EMBL CD073533 [CAATTTATGTTAAATTGGGAATTACACATATAAATCATTCGATTTTGTCGTCAAAATCAAAAAAACAAATAAAAGAATCGAACCGATCTCATGTTGTATGTTTAAAGGAATAGACAGAAAAAGATTGAACTTAATACGTAAAAGTGTATGTGTGTGTGCGTGTATGGGCATGGTAACAGAAAGAAGATTTATGAAGTGTATACGAGAGAAATAAGAAAAAGGAATCATATTTGAATGGTAGGCATTTGGTTTGTACAAACCTCAATAATAGTAACACCAGTGATAATATTAATAATAAGGCAGACAGTGTAGAGAGCAGACAACATTGTTATGCAGAAAGGCACTTCAAAATGAGAAAAAAAGAAACGACACAATATTAATGATTACTCTGTATTTTCAAGTGTGTATGTAACTGACTAATTATGGCTAATGATGGGAAGCAAGATTTGTGCAGTTTTATTTTCGTAAATGAAGAAAATTTAAACAAGAAACATAGTGTATATGAGAGGAATTAAGAAATGGACAATTTGGGAAGATGCGCAAAAATAGCACATACGCATACACACACACACGCGCAAACACATACATATGTATCTATGTGAAAGGATTCCGTTGATTAAATTAATGAATGATTTTATTTAGACTGATTT ]
[+] EMBL CD197335 [ GTAGGCATTTGGTTTGTACAAACCTCAATAATAGTAACACCAGTGATAATATTAATAATAAGGCAGACAGTGTAGAGAGCAGACAACATTGCTATGCAGAAAGGCACTTCAAAATGAGAAAAAAAGAAACGACACAATATTAATGATTACTCTGTATTTTCAAGTGTGTATGTAACTGACTAATTATGGCTAATGATGGGAAGCAAGATTTGTGCAGTTTTATTTTCGTAAATGAAGAAAA TTAAACAAGAAACATAGTGTATATGAGAGGAATTAAGAAATGGACAATTTGAGAAGATGCGCAAAAATAGCACATACGCAT ACACACACACGCGCAAACACATACATATGTATCTATGTGAAAGGATTCCGTTGATTAAATTAATGAATGATTTTATTTAGACTGATTTTATCGTT ]
[+] EMBL CD114172 [ TGGTTTGTACAAACCTCAATAATAGTAACACCAGTGATAATATTAATAATAAGGCAGACAGTGTAGAGAGCAGACAACATTGCTATGCAGAAAGGCACTTCAAAATGAGAAAAAAAGAAACGACACAATATTAATGATTACTCTGTATTTTCAAGTGTGTATGTAACTGACTAATTATGGCTAATGATGGGAAGCAAGATTTGTGCAGTTTTATTTTCGTAAATGAAGAAAATTTAAACAAGAAACATAGTGTATATGAGAGGAATTAAGAAATGGACAATTTGAGAAGATGCGCAAAAATAGCACATACGCAT ACACACACACGCGCAAACACATACATATGTATCTATGTGAAAGGATTCCGTTGATTAAATTAATGAATGATTTTATTTAGACTGATTTTATCGTTATTATTATTGTAAACAGTTTGTAATTGTGTTTTTTAAGGGATATCAATCACAAATGGACTACCTGGTATATGTTGATCACCCCATTTAATTACTAAAAAGTGTTTACCACTTTGAAATACACGATATGATACAGTGTATTGATTATTGGATAAATGTTTGACAACCACTTCTTCAGATGCTTGTTTTGGACCACAGATACCAATCAGTAGAACATCGTTACCTG ]
[+] EMBL CD114281 [ TTTGTACAAACCTCAATAATAGTAACACCAGTGATAATATTAATAATAAGGCAGACAGTGTAGATAGCAGACAACATTGTTATGCACAAAGGCACTTCAAAATGAGAAAAAAAGAAACGACACAATATTAATGATTACTCTGTATTTTCAAGTGTGTATGTAACTGACTAATTATGGCTAATGATGGGAAGCAAGATTTGTGCAGTTTTATTTTCGTAAATGAAGAAAATTTAAACAAGAAACATA ]
[+] EMBL CD165180 [ ATGATGGGAAGCAAGATTTGTGCAGTTTTATTTTCGTAAATGAAGAAAATTTAAACAAGAAACATAGTGTATATGAGAGGAATTAAGAAATGGACAATTTGAGAAGATGCGCAAAAATAGCACATACGCAT ACACACACACGCGCAAACACATACATATGTATCTATGTGAAAGGATTCCGTTGATTAAATTAATGAATGATTTTATTTAGACTGATTTTATCGTTATTATTATTGGTAACAGTTTGTAATTGTGTTTTTTAAGGGATnat ]
[-] EMBL CD079080 [ TGAGAGGAATTAAGAAATGGACAATTTGGGAAGATGCGCAAAAATAGCACATACGCATACACACACACACGCGCAAACACATACATATGTATCTATGTGAAAGGATTCCGTTGATTAAATTAATGAATGATTTTATTTAGACTGATTTTATCGTTATTATTATTGTAAACAGTTTGTAATTGTGTTTTTTAAGGGATATCAATCACAAATGGGCTACCTGGTATATGTTGATCACCCCATTTAATTACTAAAAAGTGTTTACCACTTTGAAATACACGATATGATACAGTGTATTGATTATTGGATAAATGTTTGACAACCACTTCTTCAGATGCTTGTTTTGGACCACAGATACCAATCAGTAGAACATCGTTACCTGCTTGGCTGGCATCAACATTGAAATAATTCAGACGATCACGTTCTGCATATTTTAAACCAAGACCTTGACAACTGAATAATTCAGGATGAGATCCTGAGCAGTGATTTTCTAGTTCAGCTGAAGCTGACACTCCTGTCATTGCTTTACCAACAGTTTCTAAAGTAAC ]
[-] EMBL CD141657 [ ATCACAAATGGGCTACCTGGTATATGTTGGTCACCNCATTTAATTACTAAAAAGTGTTNACCACTTGNAAATACACGATATGATACAGTGTATTGATTATTGGATAAATGTTTGACAACCACTTCTTCAGATGCTTGTTTTGGACCACAGATACCAATCAGTAGAACATCGTTACCTGCTTGGCTGGCATCAACATTGAAATAATTCAGACGATCACGTTCTGCATATTTTAAACCAAGTCCTTGACAATTGACTAATTCAGGATGAGATCCTGAGCAGTGATTTTCTAGTTCAGCTGAA ]
[+] EMBL CD121429 [ TTGGACCACAGATACCAATCAGTAGAACATCGTTACCTGCTTGGCTGGCATCAACATTGAAATAATTCAGACGATCACGTTCTGCATATTTTAAACCAAGTCCTTGACAATTGACTAATTCAGGATGAGATCCTGAGCAGTGATTTTCTAGTTCAGCTGAAGCTGACACTCCTGTCATTGCTTTACCAACAGTTTCTAAAGTAACATTTGATTGACGATCTTCTGAACGAGAATCAGTAACTTCTGATCTAGGAGTTCCCGTAACTTCAACTCGAAATGGTGAACCACTTATATGAAAATTACCACCATATTTAATAGTTATTTCATAAACACCTGGAACAGTTGGTGTATAGAAAAATGCATAACCTTCATCATGTTCTTGACTAGTAACAGTTGCTTTACTTGGTCCATCTACTGTAACATTTAGAACACCACAACCAGCGTTAGTAGTATTAAC ]
[+] EMBL CD121420 [ TTGGACCACAGATACCAATCAGTAGAACATCGTTACCTGCTTGGCTGGCATCAACATTGAAATAATTCAGACGATCACGTTCTGCATATTTTAAACCAAGTCCTTGACAATTGACTAATTCAGGATGAGATCCTGAGCAGTGATTTTCTAGTTCAGCTGAAGCTGACACTCCTGTCATTGCTTTACCAACAGTTTCTAAAGTAACATTTGATTGACGATCTTCTGAACGAGAATCAGTAACTTCTGATCTAGGAGTTCCCGTAACTTCAACTCGAAATGGTGAACCACTTATATGAAAATTACCACCATATTTAATAGTTATTTCATAAACACCTGGAACAGTTGGTGTATAGAAAAATGCATAACCTTCATCATGTTCTTGACTAGTAACAGTTGCTTTACTTGGTCCATCTACTGTAACATTTAGAACACCACAACCAGCGTTAGTAGTATT ]
[+] EMBL CD121465 [ TTGGACCACAGATACCAATCAGTAGAACATCGTTACCTGCTTGGCTGGCATCAACATTGAAATAATTCAGACGATCACGTTCTGCATATTTTAAACCAAGTCCTTGACAATTGACTAATTCAGGATGAGATCCTGAGCAGTGATTTTCTAGTTCAGCTGAAGCTGACACTCCTGTCATTGCTTTACCAACAGTTTCTAAAGTAACATTTGATTGACGATCTTCTGAACGAGAATCAGTAACTTCTGATCTAGGAGTTCCCGTAACTTCAACTCGAAATGGTGAACCACTTATATGAAAATTACCACCATATTTAATAGTTATTTCATAAACACCTGGAACAGTTGGTGTATAGAAAAATGCATAACCTTCATCATGTTCTTGACTAGTAACAGTTGCTTTACTTGGTCCATCTACTGTGACATTTAGAACAACACAAACAGCGTTAGTA ]
[-] EMBL CD141645 [ CAGTAGAACATCGTTCCCTGCTTGGCTGGCATCAACATTGAAATAATTCAGACGATCACGTTCTGCATATTTTAAACCAAGTCCTTGACAATTGACTAATTCAGGATGAGATCCTGAGCAGTGATTTTCTAGCTCAGCTGAA ]
[-] EMBL CD121471 [ TGCTGAACCACTTATATGAAAATTACCACCATATTTAATAGTTATTTCATAAACACCTGGAACAGTTGGTGTATAGAAAAATGCATAACCTTCATCATGTTCTTGACTAGTAACAGTTGCTTTACTTGGTCCATCTACTGTAACATTTAGAACACCACAACCAGCGTTAGTAGTATTAACGAAAAAGGAATTCTTTATATCAACTTTTCCTCTACGTAATCCTTCTCCAGAAGCACATACCATGCCTGGATCAGCAGCATGCTGACTAACTACAAGGCGGAATGGTGATCCTTGAATTGATTTATACACTGAATTTGGACCAAAACTCCATTCAGCTTTATTTGAATCCTTTATAGGCACAGAATGTACATGAACTAAATGTGGACCACCTTCACGTGGAACAAAACGGATTACAAATTGATCTGGATCAATAGGTTGAACAATAGCATCTT]
[+] EMBL CD119932 [ TGAACCACTTATATGAAAATTACCACCATATTTAATAGTTATTTCATAAACACCTGGAACAGTTGGTGTATAGAAAAATGCATAACCTTCATCATGTTCTTGACTAGTAACAGTTGCTTTACTTGGTCCATCTACTGTAACATTTAGAACACCACAACCAGCGTTAGTAGTATTAACGAAAATGGAATTCTTTATATCAACTTTTCCTCTACGTAATCCTTCTCCAGAAGCACATACCATGCCTGGATCAGCAGCATGCTGACTAACTACAAGGCGGAATGGTGATCCTTGAATTGATTTATACACTGAATTTGGACCAAAACTCCATTC ]
consensusID : consensus_10957#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1228 fasta sequence
[GNNGANGNNNNGAACCTCTACGTAATCCTTCTCCAGAAGCACATACCATGCCTGGATCAGCAGCATGCTGACTAACTACAAGGCGGAATGGTGATCCTTGAATTGATTTATACACTGAATTTGGACCAAAACTCCATTCAGCTTTATTTGAATCCTTTATAGGCACAGAATGTACATGAACTAAATGTGGACCACCTTCACGTGGAACAAAACGGATTACAAATTGATCTGGATCAATAGGTTGAACAATAGCATCTTCATGAGTACCTGAAGGAGTTGATACTTTTGCTTTT-AAATATATCCAGGAGTTTCAACATGATGTACAGTGAAGGCTATTGGACGTCCAATTTGAAGTGTTTCTTCTTTACTGGATGTACTGCGAGCAGAGTGAACATCAGTGGTTCGAGAAGGTAGTGTGTAAGATGCTATACGTTTAGTTTGTGTGGAGTCAGAAACATGTATACGGAATGGAGAACAAGGAATGTGCTCATCATTGAACTTGAGTGAGCAGATGTATGTGC-CTG-GTGCAG-TAACA-CGATA-CAGTACAG-CTGAAGAACCATCGCGTCTTTCATCGCAATCAATTTCTGCTTTACTAGGACCTTCCATTGCAATTGACAATGTTCCAGCGCCTGCTTCACGTGTATATATCGTAAATTCATTAGTAATATGTGTCCAACCTTCTTGAAGGCCAGGACCCATTGCTCTAACTTTGTTAGCTACACCATCAGTGATTGGACCAACAGTAAAGTGGAATGGACTCCCTGATATTTGAATCCCTTTGTGTTTAACAGT-TACTAAATGTTCACCCATTTCTTGTGGTATAAACTTAATGTTGTAATGTTCATTATCAATGGGAACAATTTCACAACGAGTAGTATGACCAGAAGGTGAAGTGATTGTAGCAGACAAATCATTTGGATTTGTATCTGTAAGCCGTAGAGTTAATTCACATCGGCTGCCAACACAGGTAACTTTTGAAGCTTCACGTCGTCTAGTAATTCGTTCCATCATTTTCATTGAAGATTCTCCACCGATATCAACACAGAATGGGCTATTTGGAACATGAACATTAGCATACTTTACATTGATAGCATATTGACCAGGTTCCGTTGGAGTGTAGATAACAGTACATGTACCATCATTATTGTCGNGACATTCTATATCTGCCTTGCTTGGACCTTCGATCGAAAGACTTAAACCAGCATAACCTGCATCACGTGTATCCACT]
[-] EMBL CD155999 [GNNGANGNNNNGAACCTCTACGTAATCCTTCTCCAGAAGCACATACCATGCCTGGATCAGCAGCATGCTGACTAACTACAAGGCGGAATGGTGATCCTTGAATTGATTTATACACTGAATTTGGACCAAAACTCCATTCAGCTTTATTTGAATCCTTTATAGGCACAGAATGTACATGAACTAAATGTGGACCACCTTCACGTGGAACAAAACGGATTACAAATTGATCTGGATCAATAGGTTGAACAATAGCATCTTCATGAGTACCTGAAGGAGTTGATACTTTTGCTTTT AAATATATCCAGGAGTTTCAACATGATGTACAGTGAAGGCTATTGGACGT ]
[+] EMBL CD122993 [ ATCTTCATGAGTACCTGAAGGAGTTGATACTTTTGCTTTTAAAATATATCCAGGAGTTTCAACATGATGTACAGTGAAGGCTATTGGACGTCCAATTTGAAGTGTTTCTTCTTTACTGGATGTACTGCGAGCAGAGTGAACATCAGTGGTTCGAGAAGGTAGTGTGTAAGATGCTATACGTTTAGTTTGTGTGGAGTCAGAAACATGTATACGGAATGGAGAACAAGGAATGTGCTCATCATTGAACTTGAGTGAGCAGATGTATGTGC CTG GTGCAG TAACA CGATA CAGTACAG CTGAAGAACCATCGCGTCTTTCATCGCAATCAATTTCTGCTTTACTAGGACCTTCCATTGCAATTGACAATGTTCCAGCGCCTGCTTCACGTGTATATATTGTAAATTCATTAATAATATGTGTCCAACCTTCTTGAAGGCCAGGACCCATTGCTCTAACTTTGTTAGCTACACCATCAGTGATTGGACCAACAGTAAAGTGGAATGGACTCCCTGATATTTGAATCCCTTTGTGTTTAACAGT TACTANATGTTCACCCATTTCTTGTGGTATAAACTAAATGTTGTAATGTTCATTATCAATGGGAACAATTT ]
[+] EMBL CD114273 [ AGATGCTATACTTGGAGATCGAGTGGACTCAAAAACATGTGTACTGAATGGAAAATAAGGAATGTGCTCATCATTGAACTTGATTGAGCAGATGTGTGTGCACTGCGTGCAGATAACAGCGATATCAGTACAGCCTGAGCAACCATCGCGTCTTTCATTGCAATCAATTTCTGCTTTACTAGGACCTTCCATTGCAATTGACAATGGTCCAGCGCCTGCTTCACGTGTATATATCGTAAATTCATTAGTAATATGTGTCCAACCTTCTTGAAGGCCACGACCCATTGCTCTAACTTTGTTAGCTACACCATCAGTGATTGGACCAACAGTAAAGTGGAATGGACTCCCTGATATTTGAATCCCTCTGTGTTTAACAGT TACTAAATGTTCACCCATTTCTTGAGGTATA ]
[+] EMBL CD166143 [ TGTATACGGAATGGAGAACAAGGAATGTGCTCATCATTGAACTTGAGTGAGCAGATGTATGTGC CTG GAGCAG TAACA CGATA CAGTACAG CTGAAGAACCATCGCGTCTTTCATCGCAATCAATTTCTGCTTTACTAGGACCTTCCATTGCAATTGACAATGTTCCAGCGCCTGCTTCACGTGTATATATCGTAGATTCATTAGTAATATGTGTCCAACCTTCGTGAAGGCCAGGACCCATTGCTCTAACTT ]
[-] EMBL CD111436 [ GCAATTGACAATGTTCCAGCGCCTGCTTCACGTGTATATATCGTAAATTCATTAGTAATATGTGTCCAACCTTCTTGAAGGCCAGGACCCATTGCTCTAACTTTGTTAGCTACACCATCAGTGATTGGACCAACAGTAAAGTGGAATGGACTCCCTGATATTTGAATCCCTTTGTGTTTAACAGT TACTAAATGTTCACCCATTTCTTGTGGTGTAAACTTAATGTTGTAATGTTCATTATCAATGGGAACAATTTCACAACGAGT ]
[-] EMBL CD111093 [ CAATGTTCCAGCGCCTGCTTCACGTGTATATATCGTAAATTCATTAGTAATATGTGTCCAACCTTCTTGAAGGCCAGGACCCATTGCTCTAACTTTGTTAGCTACACCATCAGTGATTGGACCAACAGTAAAGTGGAATGGACTTCCTGATATTTGAATCCCTTTGTGTTTAACAGT TACTAAATGTTCACCCATTTCTTGTGGTATAAACTTAATGTTGTAATGTTCATTATCAATGGGAACAATTTCACAACGAGTAGTATGACCAGAAGGTGAAGTGATTGTAGCAGACAAATCATTTGGATTTGTATCTGTAAGCCGTAGAGTTAATTCACATCGGCTGCCAACACAGGTAACTTTTGAAGCTTCACGTCGTCTAGTAATTCGTTCCATCATTTTCATTGAAGGTTCTCCACCGATATCAACACAGAATGGGCTACTTGGAACATGAACATTAGCATAC ]
[+] EMBL CD065571 [ tgTAA AGTATGC AAATGTTCACCCATTTCTTGTGGTATAAACTTAATGTTGTAATGTTCATTATCAATGGGAACAATTTCACAACGAGTAGTATGACCAGAAGGTGAAGTGATTGTAGCAGACAAATCATTTGGATTTGTATCTGTAAGCCGTAGAGTTAATTCACATCGGCTGCCAACACAGGTAACTTTTGAAGCTTCACGTCGTCTAGTAATTCGTTCCAT ]
[+] EMBL CD120532 [ GT TACTAAATGTTCACCCATTTCTTGTGGTATAAACTTAATGTTGTAATGTTCATTATCAATGGGAACAATTTCACAACGAGTAGTATGACCAGAAGGTGAAGTGTTTGTAGCAGACAAATCATTTGGATTTGTATCTGTAAGCCGTAGAGTTAATTCACATCGGCTGCCAACACAGGTAACTTTTGAAGCTTCACGTCGTCTAGTAATTCGTTCCATCATTTTCGTTGAAGATTCTCCACCGATATCAACACAGAATGGGCTATTTGGAACATGAACATTAGCATACTTTACATTGATAGCATATTGACCAGGTTCCGTTGGAGTGTAGATAACAGTACATGTACCATCATTATTGTCGNGACATTCTATATCTGCCTTGCTTGGACCTTCGATCGAAAGACTTAAACCAGCATAACCTGCATCACGTGTATCCACT]
[-] EMBL CD120553 [ gAGTATGACCAGAAGGTGAAGTGATTGTAGCAGACAAATCATTTGGATTTGTATCTGTAAGCCGTAGAGTTAATTCACATCGGCTGCCAACACAGGTAACTTTTGAAGCTTCACGTCGTCTAGTAATTCGTTCCATCAGTTTCATTGAAGATTCTCCACCGATATCAACACAGAATGGGCTATTTGGAACATGAACATTAGCATACTTTACATTGATAGCATATTGACCAGGTTCCGTTGGAGTGTAGATAACAGTACATGTACCATCATTATTGTCGTGACATTCTATATCTGCATTGCTTGGACCTTCGATAGAAAGACTTAAACCAGCATAACCTGCATCACGTGTATCCAC ]
consensusID : consensus_10957#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 521 fasta sequence
[GTACCCCTGGNCAAGGGTGGNAAATCAGGAATTAAGAAATGGACAATTTGGGAAGATGCGCAAAAATAGCACATACGCATACACACACACACGCGCAAACACATACATATGTATCTATGTGAAAGGATTCCGTTGATTAAACTAATGAATGATTTTATTTAGACTGATTTTATCGTTATTATTATTGTAAACAGTTTGTAATTGTGTTTTTTAAGGGATATCAATCACAAATGGGCTACCTGGTATATGTTGATCACCCCATTTAATTACTAAAAAGTGTTTACCACTTTGAAATACACGATATGATACAGTGTATTGATTATTGGATAAATGTTTGACAACCACTTCTTCAGATGCTTGTTTTGGACCACAGATACCAATCAGTAGAACATCGTTACCTGCTTGGCTGGCATCAACATTGAAATAATTCAGACGATCACGTTCTGCATATTTTAAACCAAGACCTTGACAACTGACTAATTCAGGATGAGATCCTGAGCAGTGATTTTCTAGTTCAGCTG]
[+] EMBL CD167940 [GTACCCCTGGNCAAGGGTGGNAAATCAGGAATTAAGAAATGGACAATTTGGGAAGATGCGCAAAAATAGCACATACGCATACACACACACACGCGCAAACACATACATATGTATCTATGTGAAAGGATTCCGTTGATTAAACTAATGAATGATTTTATTTAGACTGATTTTATCGTTATTATTATTGTAAACAGTTTGTAATTGTGTTTTTTAAGGGATATCAATCACAAATGGGCTACCTGGTATATGTTGATCACCCCATTTAATTACTAAAAAGTGTTTACCACTTTGAAATACACGATATGATACAGTGTATTGATTATTGGATAAATGTTTGACAACCACTTCTTCAGATGCTTGTTTTGGACCACAGATACCAATCAGTAGAACATCGTTACCTGCTTGGCTGGCATCAACATTGAAATAATTCAGACGATCACGTTCTGCATATTTTAAACCAAGACCTTGACAACTGACTAATTCAGGATGAGATCCTGAGCAGTGATTTTCTAGTTCAGCTG]
[-] EMBL CD114205 [ TTATTGT AACAGTTCGTAAATGTGTTTTTTAAGGGATATCAATCACAAATGGGCTACCTGATATATGTTGATCACCCCATTTAATTAATAAAAAGTGTTTACCACTTTGAAATACACGATATGATACAGTGTATTGATTATTGGATAAATGTTTGACAACCACTTCTTCAGATGCTTGTTTTGGA ]
consensusID : consensus_10957#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence
[AAATAAGAAAAAGGAATCATATTTGAATGGTAGGCATTTGGTTTGTACAAACCTCAATAATAGTAACACCAGTGATAATATTAATAATAAGGCAGACAGTGTAGAGAGCAGACAACATTGCTATGCAGAAAGGCACTTCAAAATGAGAAAAAAAGAAACGACACAATATTAATGATTACTCTGTATTTTCAAGTGTGTATGTAACTGACTAATTATGGCAATATCGGGAATCCTTTCACATAGATACATATGTATGTGTTTGCGCGTGTGTGTGTATGCGTATGTGCTATTTTTGCCATCTTCCTCAAATTGTCC]
[-] EMBL CD061954 [AAATAAGAAAAAGGAATCATATTTGAATGGTAGGCATTTGGTTTGTACAAACCTCAATAATAGTAACACCAGTGATAATATTAATAATAAGGCAGACAGTGTAGAGAGCAGACAACATTGCTATGCAGAAAGGCACTTCAAAATGAGAAAAAAAGAAACGACACAATATTAATGATTACTCTGTATTTTCAAGTGTGTATGTAACTGACTAATTATGGCAATATCGGGAATCCTTTCACATAGATACATATGTATGTGTTTGCGCGTGTGTGTGTATGCGTATGTGCTATTTTTGCCATCTTCCTCAAATTGTCC]
consensusID : consensus_10957#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence
[TGTATGGGCATGGTAACAGAAAGAAGANTTATGAANTGTANACGAGAGAAATAAGCANAAGGAATCATATTTGAATGGTAGGCANNTGGNTTGTACCAANCCTCCATAATAGTAATCCCCAGTGATAATATTAATAATCNGNCAGACAGTGTAGAGAGCAGACGACATTNCTATGCAGAAAGNCACTNCCNACTGAGCGNACAAGAAACGACTCAATATTAATGACTAACCCTGTATTCTNCCAGTGTGTATGTAACTGAGCTAAT]
[-] EMBL SM6521 [TGTATGGGCATGGTAACAGAAAGAAGANTTATGAANTGTANACGAGAGAAATAAGCANAAGGAATCATATTTGAATGGTAGGCANNTGGNTTGTACCAANCCTCCATAATAGTAATCCCCAGTGATAATATTAATAATCNGNCAGACAGTGTAGAGAGCAGACGACATTNCTATGCAGAAAGNCACTNCCNACTGAGCGNACAAGAAACGACTCAATATTAATGACTAACCCTGTATTCTNCCAGTGTGTATGTAACTGAGCTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10957#0 CAATTTATGTTAAATTGGGAATTACACATATAAATCATTCGATTTTGTCGTCAAAATCAA 60
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 ------------------------------------------------------------
consensus_10957#0 AAAAACAAATAAAAGAATCGAACCGATCTCATGTTGTATGTTTAAAGGAATAGACAGAAA 120
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 ------------------------------------------------------------
consensus_10957#0 AAGATTGAACTTAATACGTAAAAGTGTATGTGTGTGTGCGTGTATGGGCATGGTAACAGA 180
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 ------------------------------------------------------------
consensus_10957#0 AAGAAGATTTATGAAGTGTATACGAGAGAAATAAGAAAAAGGAATCATATTTGAATGGTA 240
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 ------------------------------------------------------------
consensus_10957#0 GGCATTTGGTTTGTACAAACCTCAATAATAGTAACACCAGTGATAATATTAATAATAAGG 300
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 -----------GNNGANGNNNNGAACCTCTACGTAATCCTTCTCCAGAAGCACATACCAT 49
consensus_10957#0 CAGACAGTGTAGAGAGCAGACAACATTGTTATGCAGAAAGGCACTTCAAAATGAGAAAAA 360
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 GCCTGGATCAGCAGCATGCTGACTAACTACAAGGCGGAATGGTGATCCTTGAATTGATTT 109
consensus_10957#0 AAGAAACGACACAATATTAATGATTACTCTGTATTTTCAAGTGTGTATGTAACTGACTAA 420
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 ATACACTGAATTTGGACCAAAACTCCATTCAGCTTTATTTGAATCCTTTATAGGCACAGA 169
consensus_10957#0 TTATGGCTAATGATGGGAAGCAAGATTTGTGCAGTTTTATTTTCGTAAATGAAGAAAATT 480
consensus_10957#2 -----------------------------------------------------GTACCCC 7
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 ATGTACATGAACTAAATGTGGACCACCTTCACGTGGAACAAAACGGATTACAAATTGATC 229
consensus_10957#0 TAAACAAGAAACATAGTGTATATGAGAGGAATTAAGAAATGGACAATTTGAGAAGATGCG 540
consensus_10957#2 TGGNCAAGGG---TGGNAAATC----AGGAATTAAGAAATGGACAATTTGGGAAGATGCG 60
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 TGGATCAATAGGTTGAACAATAGCATCTTCATGAGTACCTGAAGGAGTTGATACTTTTGC 289
consensus_10957#0 CAAAAATAGCACATACGCATACACACAC-AC--GCGCAAACACATACATATGTATCTATG 597
consensus_10957#2 CAAAAATAGCACATACGCATACACACAC-ACACGCGCAAACACATACATATGTATCTATG 119
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 -------------------------TGT-ATGGGCATGGTAACAGAAAGAAG-ANTTATG 33
consensus_10957#1 TTTTAAATATATCCAGGAGTTTCAACATGATGTACAGTGAAGGCTATTGGACGTCCAATT 349
consensus_10957#0 TGAAAGGATTCC-----GTTGATTAAATTAATGAATGATTTTATTTAGACTGATTTTATC 652
consensus_10957#2 TGAAAGGATTCC-----GTTGATTAAACTAATGAATGATTTTATTTAGACTGATTTTATC 174
consensus_10957#3 --------------------AAATAAGAAAAAGGA--ATCATATTTGAATGG---TAGGC 35
consensus_10957#4 AANTGTANACGA-----GAGAAATAAGCANAAGGA--ATCATATTTGAATGG---TAGGC 83
consensus_10957#1 TGAAGTGTTTCTTCTTTACTGGATGTACTGCGAGCAGAGTGAACATCAGTGG-TTCGAGA 408
* * * * *
consensus_10957#0 GTTATTATTATTGTAAACAGTTTGT---AATTGTGTTTTTTAAGGGATATCAATCACAAA 709
consensus_10957#2 GTTATTATTATTGTAAACAGTTTGT---AATTGTGTTTTTTAAGGGATATCAATCACAAA 231
consensus_10957#3 ATTTGGTTTGTAC-AAACC-TCAAT---AATAGTAA-CACCAGTGATAAT--ATTAATAA 87
consensus_10957#4 ANNTGGNTTGTACCAANCC-TCCAT---AATAGTAATCCCCAGTGATAAT--ATTAATAA 137
consensus_10957#1 AGGTAGTGTGTAAGATGCTATACGTTTAGTTTGTGTGGAGTCAGAAACATGTATACGGAA 468
* * * * * * * ** ** ** **
consensus_10957#0 TGGGCTACCTGGTATATGTTGATCACCCCATTTAATTACTAAAAAGTGTTTACCACTTTG 769
consensus_10957#2 TGGGCTACCTGGTATATGTTGATCACCCCATTTAATTACTAAAAAGTGTTTACCACTTTG 291
consensus_10957#3 TAAGGCAGACAGTGTAGAGAGCAGACAACATTGCTATGCAGAAAGGCACTTCAAAATGAG 147
consensus_10957#4 TCNGNCAGACAGTGTAGAGAGCAGACGACATTNCTATGCAGAAAGNCACTNCCNACTGAG 197
consensus_10957#1 TGGAGAACAAGGAATGTGCTCATCATTGAACTTGAGTGAGCAGATGTATGTGCCTGGTGC 528
* * * * * * * * * *
consensus_10957#0 AAATACACGATATGATACAGTGTATTGATTATTGGATAAATGTTTGACAACCACTTCTT- 828
consensus_10957#2 AAATACACGATATGATACAGTGTATTGATTATTGGATAAATGTTTGACAACCACTTCTT- 350
consensus_10957#3 AAA-AAAAGAAACGACACAAT--ATTAATGATTA-CTCTGTATT-TTCAAGTGTGTATG- 201
consensus_10957#4 CGN-ACAAGAAACGACTCAAT--ATTAATGACTAACCCTGTATTCTNCCAGTGTGTATG- 253
consensus_10957#1 AGTAACACGATACAGTACAGCTGAAGAACCATCGCGTCTTTCATCGCAATCAATTTCTGC 588
* * ** * ** * * * * * * *
consensus_10957#0 CAGATGCTTGTTTTGGACCACAGATACCAATCAGTAGAACATCGTTACCTGCTTGGCTGG 888
consensus_10957#2 CAGATGCTTGTTTTGGACCACAGATACCAATCAGTAGAACATCGTTACCTGCTTGGCTGG 410
consensus_10957#3 TAACTGA-CTAATTATGGCAATATCGGGAATCC-TTTCACATAGATACATATGTATGTGT 259
consensus_10957#4 TAACTGAGCTAAT----------------------------------------------- 266
consensus_10957#1 TTTACTAGGACCTTCCATTGCAATTGACAATGTTCCAGCGCCTGCTTCACGTGTATATAT 648
*
consensus_10957#0 CATCAACATTGAAATAATTCAGACGATCACGTTCTGCATATTTTAAACCAAGTCCTTGAC 948
consensus_10957#2 CATCAACATTGAAATAATTCAGACGATCACGTTCTGCATATTTTAAACCAAGACCTTGAC 470
consensus_10957#3 TTGCGCGTGTGTGTGTATGCGTATGTGCTATTTTTGCCATCTTCCTCAAATTGTCC---- 315
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 CGTAAATTCATTAGTAATATGTGTCCAACCTTCTTGAAGGCCAGGACCCATTGCTCTAAC 708
consensus_10957#0 AATTGACTAATTCAGGATGAGATCCTGAGCAGTGATTTTCTAGTTCAGCTGAAGCTGACA 1008
consensus_10957#2 AACTGACTAATTCAGGATGAGATCCTGAGCAGTGATTTTCTAGTTCAGCTG--------- 521
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 TTTGTTAGCTACACCATCAGTGATTGGACCAACAGTAAAGTGGAATGGACTCCCTGATAT 768
consensus_10957#0 CTCCTGTCATTGCTTTACCAACAGTTTCTAAAGTAACATTTGATTGACGATCTTCTGAAC 1068
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 TTGAATCCCTTTGTGTTTAACAGTTACTAAATGTTCACCCATTTCTTGTGGTATAAACTT 828
consensus_10957#0 GAGAATCAGTAACTTCTGATCTAGGAGTTCCCGTAACTTCAACTCGAAATGGTGAACCAC 1128
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 AATGTTGTAATGTTCATTATCAATGGGAACAATTTCACAACGAGTAGTATGACCAGAAGG 888
consensus_10957#0 TTATATGAAAATTACCACCATATTTAATAGTTATTTCATAAACACCTGGAACAGTTGGTG 1188
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 TGAAGTGATTGTAGCAGACAAATCATTTGGATTTGTATCTGTAAGCCGTAGAGTTAATTC 948
consensus_10957#0 TATAGAAAAATGCATAACCTTCATCATGTTCTTGACTAGTAACAGTTGCTTTACTTGGTC 1248
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 ACATCGGCTGCCAACACAGGTAACTTTTGAAGCTTCACGTCGTCTAGTAATTCGTTCCAT 1008
consensus_10957#0 CATCTACTGTAACATTTAGAACACCACAACCAGCGTTAGTAGTATTAACGAAAAAGGAAT 1308
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 CATTTTCATTGAAGATTCTCCACCGATATCAACACAGAATGGGCTATTTGGAACATGAAC 1068
consensus_10957#0 TCTTTATATCAACTTTTCCTCTACGTAATCCTTCTCCAGAAGCACATACCATGCCTGGAT 1368
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 ATTAGCATACTTTACATTGATAGCATATTGACCAGGTTCCGTTGGAGTGTAGATAACAGT 1128
consensus_10957#0 CAGCAGCATGCTGACTAACTACAAGGCGGAATGGTGATCCTTGAATTGATTTATACACTG 1428
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 ACATGTACCATCATTATTGTCGNGACATTCTATATCTGCCTTGCTTGGACCTTCGATCGA 1188
consensus_10957#0 AATTTGGACCAAAACTCCATTCAGCTTTATTTGAATCCTTTATAGGCACAGAATGTACAT 1488
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 AAGACTTAAACCAGCATAACCTGCATCACGTGTATCCACT-------------------- 1228
consensus_10957#0 GAACTAAATGTGGACCACCTTCACGTGGAACAAAACGGATTACAAATTGATCTGGATCAA 1548
consensus_10957#2 ------------------------------------------------------------
consensus_10957#3 ------------------------------------------------------------
consensus_10957#4 ------------------------------------------------------------
consensus_10957#1 ------------------------------------------------------------
consensus_10957#0 TAGGTTGAACAATAGCATCTT 1569
consensus_10957#2 ---------------------
consensus_10957#3 ---------------------
consensus_10957#4 ---------------------
consensus_10957#1 ---------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||