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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10959#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1062 fasta sequence
[TTTTATTAGACAGAAATCAGACGTTCCATGTATTGACTTACGAATTGTATTCGGTTCTAAGTCATATTCAGGTTTCATCTGTTTGACTGTTTTGCTTTCACGCTTGTGTTGTCGATAATTGCTATCGATTGCTCTTCTTAATAAAACTTTAAGATATGCCACTTCCTAAACATACAGTTCAACCAGTCAAACTCAGTCAGGTAGTTGTTCCGAATGGCATCGACAATGAGTTAGAATTTGTGGTTAATTCCACGGTCTGCAATGTCATGAGACAGATAGCGTCAGTTAGCCGATTGGCCAATACCATGTTCGAAGAACTCACTACCGATTTTTCTCGACTAGTTGAGCGGACTATTCGTCTGCAAAATCGTCTGGGTAAACTTCATGAAGATATGCAAATGGCACGCAGCGGAGACGAAGACCTTACTGCTGGGGTACAAGAAGTTGAGATTCCGGTGTTCTCTAGCAAAAAGCCAACCGATAGCCAGGTATTAAATCAAAATACCATACCTCCTTCTATGCGGTCACAATATGATCAAGCAGAAGCAGCTCCAGCACTTCAACAAATGGATGAACTCAGAGATGATAAGAAAACTAGCATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTAT-CATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCANAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATC]
[+] EMBL CD161077 [TTTTATTAGACAGAAATCAGACGTTCCATGTATTGACTTACGAATTGTATTCGGTTCTAAGTCATATTCAGGTTTCATCTGTTTGACTGTTTTGCTTTCACGCTTGTGTTGTCGATAATTGCTATCGATTGCTCTTCTTAATAAAACTTTAAGATATGCCACTTCCTAAACATACAGTTCAACCAGTCAAACTCAGTCAGGTAGTTGTTCCGAATGGCATCGACAATGAGTTAGAATTTGTGGTTAATTCCACGGTCTGCAATGTCATGAGACAGATAGCGTCAGTTAGCCGATTGGCCAATACCATGTTCGAAGAACTCACTACCGATTTTTCTCGACTAGTTGAGCGGACTATTCGTCTGCAAAATCGTCTGGGTAAACTTCATGAAGATATGCAAATGGCACGCAGCGGAGACGAAGACCTTACTGCTGGGGTACAAGAAGTTGAGATTCCGGTGTTCTCTAGCAAAAAGCCAACCGATAGCCAGGTATTANATCAAAATACCATACCTCCTTCTATGCGGTCACAATATGATCAAGCAGAAGCAGCTCCAGCACTTCAACAAATGGATGAA ]
[+] EMBL CD113068 [ AGTTAGAATTTGTGGTTAATTCCACGGTCTGCAATGTCATGAGACAGATAGCGTCAGTTAGCCGATTGGCCAATACCATGTTCGAAGAACTCACTACCGATTTTTCTCGACTAGTTGAGCGGACTATTCGTCTGCAAAATCGTCTGGGTAAACTTCATGAAGATATGCAAATGGCACGCAGCGGAGACGAAGACCTTACTGCTGGGGTACAAGAAGTTGAGATTCCGGTGTTCTCTAGCAAAAAGCCAACCGATAGCCAGGTATTAAATCAAAATACCATACCTCCTTCTATGCGGTCACAATATGATCAAGCAGAAGCAGCTCCAGCACTTCAACAAATGGATGAACTCAGAGATGATAAGAAAACTAGCATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCC ]
[+] EMBL CD113180 [ TTACTGCTGGGGTACAAGAAGTTGAGATTCCGGTGTTCTCTAGCAAAAAGCCAACCGATAGCCAGGTATTAAATCAAAATACCATACCTCCTTCTATGCGGTCACAATATGATCAAGCAGAAGCAGCTCCAGCACTTCAACAAATGGATGAACTCAGAGGTGATAGGAAAACTAGCATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTAT CATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAAT ]
[+] EMBL CD113226 [ TTACTGCTGGGGTACAAGAAGTTGAGATTCCGGTGTTCTCTAGCAAAAAGCCAACCGATAGCCAGGTATTAAATCAAAATACCATACCTCCTTCTATGCGGTCACAATATGATCAAGCAGAAGCAGCTCCAGCACTTCAACAAATGGATGAACTCAGAGATGATAAGAAAACTAGCATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGATAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTAT CATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAA ]
[+] EMBL CD113236 [ TTACTGCTGGGGTACAAGAAGTTGAGATTCCGGTGTTCCCTAGCAAAAAGCCAACCGATAGCCAGGTATTAAATCAAAATACCATACCTCCTTCTATGCGGTCACAATATGATCAAGCAGAAGCAGCTCCAGCACTTCAACAAATGGATGAACTCAGAGATGATAAGAAAACTAGCATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTAT CATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCGCCCCCGCCACC ]
[+] EMBL CD113256 [ TTACTGCTGGGGTACAAGAAGTTGAGATTCCGGTGTTCTCTAGCAAAAAGCCAACCGATAGCCAGGTATTAAATCAAAATACCATACCTCCTTCTATGCGGTCACAATATGATCAAGCAGAAGCAGCTCCAGCACTTCAACAAATGGATGAACTCAGAGATGATAAGAAAACTAGCATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAAC TATCCATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAAT CTT A TA CACCCCg ]
[+] EMBL CD113240 [ TTACTGCTGGGGTACAAGAAGTTGAGGTTCCGGTGTTCTCTAGCAAAAAGCCAACCGATAGCCAGGTATTAAATCAAAATACCATACCTCCTTCTATGCGGTCACAATATGATCAAGCAGAAGCAGCTCCAGCACTTCAACAAATGGATGAACTCAGAGATGATAAGAAAACTAGCATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTAT CATTCAGCAACCAGGAGTCGGTGGTCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCANAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATC]
[+] EMBL CD113196 [ TTACTGCTGGGGTACAAGAAGTTGAGGTTCCGGTGTTCTCTAGCAAAAAGCCAACCGATAGCCAGGTATTAAATCAAAATACCATACCTCCTTCTATGCGGTCACAATATGATCAAGCAGAAGCAGCTCCAGCACTTCAACAAATGGATGAACTCAGAGATGATAAGAAAACTAGCATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTAT CATTCAGCAACCAGGAGTCGGTGGTCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAA ]
consensusID : consensus_10959#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 810 fasta sequence
[AGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACCAGCCCATCAGATGACTCTTCCTGATCCTCCCGCACTCCATACACAAATGGCATCTCTTATTTTACCACCAACACTTCCTCCAGCTTTCTTGAGCGACAGAGAGTCAAAAGTTCCAGATATTAACAAAAATTCACATCCGAATGATGAAGCTGCTAGCAGAGACCCCTCTGGACAAGATGGAAATGGTAGGATATCACCACCCACACAAATGCATGATGGCAAAGAAGCC]
[+] EMBL CD129276 [AGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAACCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCATAGACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACCAGCCCATCAGATGACTCTTCCTGATCCTCCCGCACTCCATACAC ]
[-] EMBL CD113192 [ AAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTTAAAGTGGATCTAATCAGGGAGTTCAGGAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTACCAACCATGACCCTTCACCAGCCCATCAGATGACTCTTCCTGATCCTCCCGCACTCCATACACAAATGGCATCTCTTATTTTACCAC ]
[+] EMBL CD118967 [ GCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGAACCTTCAC ]
[-] EMBL CD119016 [ CCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACC ]
[-] EMBL CD119091 [ CCGCCAAGAAGAAAAGACCGAAAGTAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACC ]
[-] EMBL CD119109 [ CCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACC ]
[+] EMBL CD112157 [ AGGGAGTTCAGAAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCACAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACCAGCCCATCAGATGACTCTTCCTGATCCTCCCGCACTCCATACACAAATGGCATCTCTTATTTTACCAACAACAATTCCTCCAGCTTTCTTGAGC ]
[+] EMBL CD112511 [ AGGGAGTTCAGAAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGACAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTNGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATAGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACCAGCCCATCAGATGACTCTTCCTGATCCTCCCGCACTCCATACACAAATGGCATCTCTTATTTTACCAACAACACTTCCTCCAGCTTTCTTGAGCGACAGAGAGTCAAAAGT ]
[+] EMBL CD112531 [ AGGGAGTTCAGAAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAGAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGCTACCAACAACATTTGTATCAACCATGACCCTTCACCAGCCCATCAGATGACTCTTCCTGATCCTCCCGCACTCCATACACAAATGGCATCTCTTATTTTACCAACAACAACTCCTCCAGCTTTCTTG ]
[-] EMBL CD062184 [ GGGAGTTCAGAAACCTCAACTTATCATTCAGCAANCAGGAGTTGGTGGCCATAAACTTCCCGCATCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACCAGCCCATCAGATGACTCTTCCTGATCCTCCCGCACTCCATACACAAATGGCATCTCTTATTTTACCACCACCACTTCCTCCAGCTTTCTTGAGCGACAGAGAGTCAAAAGTTCCAGATATTAACAAAAATTCACATCCGAATGATGAAGCTGCTAGC ]
[+] EMBL CD168092 [ GGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGTAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACCAGCCCATCAGATGACTCTTCCTGATCCTCCCGCACTCCATACAC ]
[+] EMBL CD168057 [ CATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGTAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACCAGCCCATCAGATGACTCTTCCTGATCCTCCCGCACTCCATACAC ]
[-] EMBL CD112123 [ AGTATTGTCAACGGTAAACCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATACAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACCAGCCCATCAGATGACTCTTCCTGATCCTCCCGCACTCCATACACAAATGGCATCTCTTATTTTACCACCACCACTTCCTCCAGCTTTCTTGAGCGACAGAGAGTCAAAAGTTCCAGATATTAACAAAAATTCACATCCGAATGATGAAGCTGCTAGCAGAGACCCCTCTGGACAAGATGGAAATGGTAGGATAT ]
[-] EMBL CD184387 [ CCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCNCCGCCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACCAGCCCATCAGATGACTCTTCCTGATCCTCCCGCACTCCATACACAAATGGCATCTCTTATTTTACCACCACCACTTCCTCCAGCTTTCTTGAGCGACAGAGAGTCAAAAGTTCCAGATATTAACAAAAATTCACATCCGAATGATGAAGCTGCTAGCAGAGACCCCTCTGGACAAGATGGAAATGGTAGGATATCACCACCCACACAAATGCATGATGGCAAAGAAGCC]
consensusID : consensus_10959#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence
[TTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTC]
[+] EMBL CD202392 [TTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTATCATTCAGCAACCAGGAGTTGGTGGCCATAAACTTCCCGCACCGTTATCCGAGCAAAACGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAATGCCAGTATTGTCAACACAAGTTGATAATGCAAAGGATTTTCGACATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAATCCGTTTC]
consensusID : consensus_10959#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 217 fasta sequence
[ATCTATAAGGTCCGCAAAATAACTATGAATTACTTTTGTATAGAGCTTAGGTGGTGTGGCTGGATGTGGCCCAGATGTAGTCATCATTAATATTCCTTTAAGGTCAGGTTTANTTGGNCAATAATCACTTTCCTTGGTTAGATGCATGTCGAAAATCCTNTGCATTATCAACTCGTGTTGNCGGATGAAGAGCATTCGGCGGNGGTGGCGGCGGTGG]
[-] EMBL SMRAP144 [ATCTATAAGGTCCGCAAAATAACTATGAATTACTTTTGTATAGAGCTTAGGTGGTGTGGCTGGATGTGGCCCAGATGTAGTCATCATTAATATTCCTTTAAGGTCA ]
[+] EMBL SMRAP160 [ CTATAAGGTCCGCAAAATAACTATGAATTACTTTTGTATAGAGCTTAGGTGGTGTGGATGGATGTGGNCCAGATGTAGTCATCATTAATATTCCTTTAAGGTCAGGTTTANTTGGNCAATAATCACTTTCCTTGGTTAGATGCATGTCGAAAATCCTNTGCATTATCAACTCGTGTTGNCGGATGAAGAGCATTCGGCGGNGGTGGCGGCGGTGG]
consensusID : consensus_10959#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence
[CAACAAATGGATGAACTCAGAGATGATAAGAAAACTAGCATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAATATTAACAAAAATTCACATCCGAATGATG]
[+] EMBL CD193735 [CAACAAATGGATGAACTCAGAGATGATAAGAAAACTAGCATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAATGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAATATTAACAAAAATTCACATCCGAATGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10959#1 ------------------------------------------------------------
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 TTTTATTAGACAGAAATCAGACGTTCCATGTATTGACTTACGAATTGTATTCGGTTCTAA 60
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 ------------------------------------------------------------
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 GTCATATTCAGGTTTCATCTGTTTGACTGTTTTGCTTTCACGCTTGTGTTGTCGATAATT 120
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 ------------------------------------------------------------
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 GCTATCGATTGCTCTTCTTAATAAAACTTTAAGATATGCCACTTCCTAAACATACAGTTC 180
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 ------------------------------------------------------------
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 AACCAGTCAAACTCAGTCAGGTAGTTGTTCCGAATGGCATCGACAATGAGTTAGAATTTG 240
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 ------------------------------------------------------------
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 TGGTTAATTCCACGGTCTGCAATGTCATGAGACAGATAGCGTCAGTTAGCCGATTGGCCA 300
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 ------------------------------------------------------------
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 ATACCATGTTCGAAGAACTCACTACCGATTTTTCTCGACTAGTTGAGCGGACTATTCGTC 360
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 ------------------------------------------------------------
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 TGCAAAATCGTCTGGGTAAACTTCATGAAGATATGCAAATGGCACGCAGCGGAGACGAAG 420
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 ------------------------------------------------------------
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 ACCTTACTGCTGGGGTACAAGAAGTTGAGATTCCGGTGTTCTCTAGCAAAAAGCCAACCG 480
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 -----------------------------------------------------------A 1
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 ATAGCCAGGTATTAAATCAAAATACCATACCTCCTTCTATGCGGTCACAATATGATCAAG 540
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 GACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAAAAGCTGCT 61
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 CAGAAGCAGCTCCAGCACTTCAACAAATGGATGAACTCAGAGATGATAAGAAAACTAGC- 599
consensus_10959#4 --------------------CAACAAATGGATGAACTCAGAGATGATAAGAAAACTAGC- 39
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 CCCGTTAAAAGTGGATCTAATCAGGGAGCAGCTTTTTCTTTGATTTATGGAGTCAGGAAA 121
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 --------ATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAA 651
consensus_10959#4 --------ATGAGATTGTATTCAGATCCCAGCTTTTTCTTTGATTTATGGAGTCAGGAAA 91
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 TGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAA 181
consensus_10959#2 --TTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAA 58
consensus_10959#0 TGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAAGACCGAAAATAAAGGGAA 711
consensus_10959#4 TGTTACAAGACCGCAAGCACAAAAGAGCCGCCAAGAAAAAAATATTAACAA--------A 143
consensus_10959#3 ----------------ATCTATAAGGTCCGCAAAATAACTATGAATTACTTTT--GTATA 42
* *** **** ** ** * * * *
consensus_10959#1 AAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTATCATTC 241
consensus_10959#2 AAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTATCATTC 118
consensus_10959#0 AAGCTGCTCCCGTTAAAAGTGGATCTAATCAGGGAGTTCAGAAACCTCAACTTATCATTC 771
consensus_10959#4 AATTCACATCCG--AATGATG--------------------------------------- 162
consensus_10959#3 GAGCT-TAGGTGGTGTGGCTGGATGTGGCCCAGATGT--AGTCATCATTAATATTCCTTT 99
* * **
consensus_10959#1 AGCAACCAGGAGTTGGTGGCCA-TAA--ACTTCCCGCACCGTTATCCGAGCAAAA----- 293
consensus_10959#2 AGCAACCAGGAGTTGGTGGCCA-TAA--ACTTCCCGCACCGTTATCCGAGCAAAA----- 170
consensus_10959#0 AGCAACCAGGAGTTGGTGGCCA-TAA--ACTTCCCGCACCGTTATCCGAGCAAAA----- 823
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 AA-GGTCAGGTTTANTTGGNCAATAATCACTTTCCTTGGTTAGATGCATGTCGAAAATCC 158
consensus_10959#1 -CGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAAT-GCCAGTATTGTCAACGGTAAA 351
consensus_10959#2 -CGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAAT-GCCAGTATTGTCAAC------ 222
consensus_10959#0 -CGGTTCTGTTAATGCCAGTTCTCATATGGATAGAAAT-GCCAGTATTGTCAACGGTAAA 881
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 TNTGCATTATCAACTCGTGTTGNCGGATGAAGAGCATTCGGCGGNGGTGGCGGCGGTGG- 217
consensus_10959#1 CCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCG 411
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 CCCACCCAACATCAGTTTGTGAATAATGGGGATTTTGGGAATCCTTCATTACCACCCCCG 941
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 CCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCAAAGGATTTTCGA 471
consensus_10959#2 --------------------------------ACAAGTTGATAATGCAAAGGATTTTCGA 250
consensus_10959#0 CCACCTCCACCGAATGCTCTTCATCCGTCAACACAAGTTGATAATGCANAGGATTTTCGA 1001
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 CATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAAT 531
consensus_10959#2 CATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAAT 310
consensus_10959#0 CATGCATCTAACCAAAAAAGTGATTATTGCCCAATTAAACCTGACCTTGATGGTGTCAAT 1061
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 CCGTTTCCTTCAGTTACCAACAACATTTGTATCAACCATGACCCTTCACCAGCCCATCAG 591
consensus_10959#2 CCGTTTC----------------------------------------------------- 317
consensus_10959#0 C----------------------------------------------------------- 1062
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 ATGACTCTTCCTGATCCTCCCGCACTCCATACACAAATGGCATCTCTTATTTTACCACCA 651
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 ------------------------------------------------------------
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 ACACTTCCTCCAGCTTTCTTGAGCGACAGAGAGTCAAAAGTTCCAGATATTAACAAAAAT 711
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 ------------------------------------------------------------
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 TCACATCCGAATGATGAAGCTGCTAGCAGAGACCCCTCTGGACAAGATGGAAATGGTAGG 771
consensus_10959#2 ------------------------------------------------------------
consensus_10959#0 ------------------------------------------------------------
consensus_10959#4 ------------------------------------------------------------
consensus_10959#3 ------------------------------------------------------------
consensus_10959#1 ATATCACCACCCACACAAATGCATGATGGCAAAGAAGCC 810
consensus_10959#2 ---------------------------------------
consensus_10959#0 ---------------------------------------
consensus_10959#4 ---------------------------------------
consensus_10959#3 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||