These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 964 fasta sequence [ACCTTAACGGTGAAGATGAGATACATTCTTCCTTCTAGTTTCTTCATATCAACTTGTTTATTGGTCATTCTATTGACCAAGTTCTTTAATTGTCAGTTTACTTGTGAACACATCAAAAATGTAAAATATGAAAAGATCATTTCAGAAAATGCCACATATAGATATTCGGATCATTATGAATACTTTCAAACGGTTCTTGTTGAACAGCCACCTCCTGTTGTAAGTGGAGATTATGTCAAAATTGAAATGCCTACTAAAAAGGTTACTCCAAAGTCTGAATTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAAGATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAATAGATATCCTGAAGGAGGTTCGGTACCTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATCGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACCTGATATGGAATGTCATTGGTGTTTAACAGCTAATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGA-TTAATAATTGTTCAAAGAATAATATGAAAAAGGATAAGAAAAGTGAACAAATGGATAACAAAAGTGATCAGATGGATAACAAAAGTGATCAAAAGGATAACAAAAGTGTTCCAAAGGATAACAAAAGTGTTCTCAAAGGGT] [-] EMBL CD148209 [ACCTTAACGGTGAAGATGAGATACATTCTTCCTTCTAGTTTCTTCATATCAACTTGTTTATTGGTCATTCTATTGACCAAGTTCTTTAATTGTCAGTTTACTTGTGAACACATCAAAAATGTAAAATATGAAAAGATCATTTCAGAAAATGCCACATATAGATATTCGGATCATTATGAATACTTTCAAACGGTTCTTGTTGAACAGCCACCTCCTGTTGTAAGTGGAGATTATGTCAAAATTGAAATGCCTACTAAA ] [-] EMBL CD147949 [ TTAACGGTGAAGATGAGATATATTCTACCTTCTAGTTTCTTAATACCAACTTGTTTATTGGTCATTCTATTGACCAAGTTCATTAATTGTCAGTTTACTTGTGATCACATCAAAAATGTAAAATATGAAAAGATCATTTCAGAAAATGCCACATATAGATATTCGGATCATTATGAATACTTTCAAACGGTTCTTGTTGAACAGCCACCTCCTGTTGTAAGTGGGGATTATGTCAAAATTGAAATGCCTACTCAA ] [+] EMBL CD118172 [ ATATTCGGATCATTATGAATACTTTCAAACGGTTCTTGTTGAACAGCCACCTCCTGTTGTAAGTGGAGATTATGTCAAAATTGAAATGCCTACTAAAAAGGTTACTCCAAAGTCTGAATTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAAGATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAGGTAACTTATATGA ] [+] EMBL CD114883 [ AAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAGGTAACTTATATGATACATTCAAATGGAAAGATGTCTCTTTACTTTAACAATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCTGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACTTGATATGGAATGTCATTGGTGTTTAACAGCTAATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGA TTAATAATTGTTCAAAGAATAATATGAAAAAGGATAAGAAAAGTGAACAAATGGATA ] [+] EMBL CD113139 [ AAATAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAGATGGGAAGATGTCTCTCTACTTTAACGATATACCCAGGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAAAAAACTTTATCAAAAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTCTCAAATGAAACATGTTTAAGTGCATCGAAACC ] [+] EMBL CD144525 [ AAATAGATATCCTGAAGGAGGTTCGATACTTTATCTGATATATCCAAATGGGAAGATGTCTCTTTACTTTAACAATATACCCCAGGAAATTGTTGGAGAAAGTTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGATAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAAGAAACTTTATCAAAAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACC ] [+] EMBL CD113041 [ AAATAGATATTCTGAAGGAGGTTCGGTACCTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACCCAGGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTTCG ACCATACAATCGAACTCAGATTCCAAAAAACTTTATCAAAAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAACATGTTTAAGTGCATCGAAACC ] [+] EMBL CD144495 [ actTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACt ] [-] EMBL CD121883 [ GTCTCTCTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTAGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACTTGATATGGAATGTCATTGGTGTTTAACAGCTAATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGA TTAATAATTGTCCAAAGAATAATATGAAAAAGGATAAGAAAAGTGAACAAATGGATAACAAAAGTGATCAGA ] [+] EMBL AW400407 [ TCGAATTCACGTTCCAATAAACTTTATCAAATTTGATACTTTAGTGGAGTTTGAACCAAATACAAAAAGTTGTTTCATGAAGGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACCTGATATGGAATGTCATTGGTGTTCAACAGCTGATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGATTTAATAATTGTTCAAAGAATAATATGCAAAAGGATAACAAAAGTGAACAAATGGATAAGAAAAGTGAACAAATGGATAACAAAAGTGATCAAAAGGATAACAAAAGTGTTCCAAAGGATAACAAAAGTGTTCTCAAAGGGT] consensusID : consensus_10975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [CTCGGAGCCAANATTCGGCACGAGGAGACCTAATTATTTCGACGACTACAATAAGTCAGAATACCTATGTAGGAAGCATCATGGAAAGCAAACTGATAATATTAGCATACATACTGTGTGTGTGTGTGACTAGTTGTCTTTGAATATGATGACCTAATGAATGACATACTACTGAAATGATTAGTTGCTTTTGATCTAGGTGGTTGTGTGTTTGACAGATCTTGGCTTATATATCCCATGCTTATTTCCAGATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACTTGATATGGAATGTCATTGGTGTTTAACAGCTAATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGATTAATAATTGTCCAAAGAATAATATGAAAAAGGATAAGAAAAGTGAACANATGGATAACANAAGTGATCAGA] [+] EMBL CD080555 [CTCGGAGCCAANATTCGGCACGAGGAGACCTAATTATTTCGACGACTACAATAAGTCAGAATACCTATGTAGGAAGCATCATGGAAAGCAAACTGATAATATTAGCATACATACTGTGTGTGTGTGTGACTAGTTGTCTTTGAATATGATGACCTAATGAATGACATACTACTGAAATGATTAGTTGCTTTTGATCTAGGTGGTTGTGTGTTTGACAGATCTTGGCTTATATATCCCATGCTTATTTCCAGATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACTTGATATGGAATGTCATTGGTGTTTAACAGCTAATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGATTAATAATTGTCCAAAGAATAATATGAAAAAGGATAAGAAAAGTGAACANATGGATAACANAAGTGATCAGA] consensusID : consensus_10975#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 588 fasta sequence [TGTAATAGAAATACGCGGAGTCGATTTAATAGGAAAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTCATCGCTATCAAATGGAATGTACTGAAAAGTGTATATCCTGAAGGAGGTGAGGTAACTTATATGATACATTTAAATGGAAAGATGTCTCTTTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAATAAACTTGACCAAAAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAATGCATCGAAACCTGATATGAAATGTTATTGGTGTTCAACAGCTAATCTGTGTAGTAATGGTCATGATACACAATCGAAGGATTGGATGATTAATAATTGTCCAAAGATTAATATGCAAATGGATAAGAAAAGTGATCAGAAGGATAACAAGTCAATGTTTAATTACCTATATGTTTTGATACC] [+] EMBL CD152562 [TGTAATAGAAATACGCGGAGTCGATTTAATAGGAAAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTCATCGCTATCAAATGGAATGTACTGAAAAGTGTATATCCTGAAGGAGGTGAGGTAACTTATATGATACATTTAAATGGAAAGATGTCTCTTTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTA ] [-] EMBL CD097367 [ AATGGAATGTACTGAAAAGTGTATATCCTGAAGGAGGTGAGGTAACTTATATGATACATTTAAATGGAAAGATGTCTCTTTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAGACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAATAAACTTGACCAAAAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAATGCATCGAAACCTGATATGAAATGTTATTGGTGTTCAACAGCTAATCTGTGTAGTAATGGTCATGATACACAATCGAAGGATTGGATGATTAATAATTGTCCAAAGATTAATATGCAAATGGATAAGAAAAGTGATCAGAAGGATAACAAGTCAATGTTTAATTACCTATATGTTTTGATACC] [-] EMBL CD117579 [ TTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTTCGAACCACACAATCGAATTCAGATTCCAATAAACTTGACCAAAAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAA ] [-] EMBL CD117478 [ TTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAATAAACTTGACCAAAAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAA ] consensusID : consensus_10975#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 535 fasta sequence [GCANAAAACAATATGTTGCTCAAAAGGTTACTCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTAATCGCTGTCGCATGGTATGTTCACAAACGTAGATATCCTGAAGGAGGTCAGGTAGTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACTTTAACGAATTACCCAAGGGAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGACAAAAATGTTTAGATAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCGATAAACTTGACCAAAAGTGATACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAATGCCTCGAAACCTGATATGAAATGTCATTTGGTGTT] [+] EMBL CD152883 [GCANAAAACAATATGTTGCTNAAAAGGTTACTNCAAAGTTTGCACTTAAATATTATGGTCAAACAGATNAAGAATTATCCATTTCAAATTCTGGTGCNNTAGAAATACACGGAGAAGATTTATTAGGACAAA ] [+] EMBL CD152656 [ ATATGTTGCTCAAAAGGTTACTCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTAATCGCTGTCGCATGGTATGTTCACAAACGTAGATATCCTGAAGGAGGTCAGGTAGTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACTTTAACGAATTACCCAAGGGAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGACAAAAATGTTTAGATAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCGATAAACTTGACCAAAAGTGATACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAATGCCTCGAAACCTGATATGAAATGTCATTTGGTGTT] [+] EMBL CD152630 [ ATATGTTGCTCAAAAGGTTACTCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTAATCGCTGTCGCATGGTATGTTCACAAACGTAGATATCCTGAAGGAGGTCAGGTAGTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACTTTAACGAATTACCCAAGGGAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGACAAAAATGTTTAGATAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCGATAAACTTGACCAAAAGTGATACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAATGCATCGAAACCTGATATGAAATGTCA TTGGTGTT] [+] EMBL CD152628 [ ATATGTTGCTCAAAAGGTTACTCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTAATCGCTGTCGCATGGTATGTTCACAAACGTAGATATCCTGAAGGAGGTCAGGTAGTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACTTTAACGAATTACCCAAGGGAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGACAAAAATGTTTAGATAAACAAAACAATACTGTTTTCG ] consensusID : consensus_10975#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [AAACAATTCGTCTTGATCAGAAACTTCCTGTTGTAAGTGGAGATTTATCCAAAAAACAATCTTTTGTTCAAAAGATTACTCCAAAGTTTCCACTTAAATATTATGGTCAAAAAGTTAAAGAATTATCCATTTTAAATTCTGGTGTAATAGAAATATACGGAGACGATTTAATAGGACAAATTCATATTTTTCAAAAAATCACCTTTGAAGAGAATTTTAATACTGCAAATGAAAATGAATTCATCGCTGTCGCATGGCACGTTAACGAACGTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAG] [+] EMBL CD084354 [AAACAATTCGTCTTGATCAGAAACTTCCTGTTGTAAGTGGAGATTTATCCAAAAAACAATCTTTTGTTCAAAAGATTACTCCAAAGTTTCCACTTAAATATTATGGTCAAAAAGTTAAAGAATTATCCATTTTAAATTCTGGTGTAATAGAAATATACGGAGACGATTTAATAGGACAAATTCATATTTTTCAAAAAATCACCTTTGAAGAGAATTTTAATACTGCAAATGAAAATGAATTCATCGCTGTCGCATGGCACGTTAACGAACGTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAG] consensusID : consensus_10975#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 296 fasta sequence [ACGTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACTTAAAGAATTTGATGAAAATAATTTGCAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAGCCAATACTGTTTTCGAACCATACAATCGAATTCACGTTCCAATAAACTTTATCAAAAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCGAAGGAAACATGTTTAAATGCATCGAAACCTGATA] [+] EMBL CD150660 [ACGTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACTTAAAGAATTTGATGAAAATAATTTGCAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAGCCAATACTGTTTTCGAACCATACAATCGAATTCACGTTCCAATAAACTTTATCAAAAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCGAAGGAAACATGTTTAAATGCATCGAAACCTGATA] [+] EMBL CD113127 [ACGTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACTTAAAGAATTTGATGAAAATAATTTGCAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAGCCAATACTGTTTTCGAACCATACAATCGAATTCACGTTCCAATAAACTTTATCAAAAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAAGGAAACATGTTTAAATGCATCGAAACC ] consensusID : consensus_10975#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 244 fasta sequence [GGATTGCATAGAGAATACTGGTGTGTGGCTCGACGAGGGTGTAAGTATGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAAGATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAGGTAACTTATATGATACATTCAAATGGAAAGATGTCTCTTTACTT] [-] EMBL CD116753 [GGATTGCATAGAGAATACTGGTGTGTGGCTCGACGAGGGTGTAAGTATGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAAGATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAGGTAACTTATATGATACATTCAAATGGAAAGATGTCTCTTTACTT] [-] EMBL CD116662 [GGATTGCATAGAGAATACTGGTGTGTGGCTCGACGAGGGTGTAAGTATGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAAGATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAGGTAACTTATATGATACATTCAAATGGAAAGATGTCTCTTTACTT] consensusID : consensus_10975#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [TAATCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTTAAATTCTGGTAAGCAGGCCTAAAATGATCTTGAAAATGTTCATCTATGTATTAAGGTTAAGTAAAGGTTTAAAGTTTCATGCACCTAGGAAGCATCGTTTGATAAACAAGGAGGATCAGATGCGGATGTAAAGGCGAG] [+] EMBL CD123618 [TAATCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTTAAATTCTGGTAAGCAGGCCTAAAATGATCTTGAAAATGTTCATCTATGTATTAAGGTTAAGTAAAGGTTTAAAGTTTCATGCACCTAGGAAGCATCGTTTGATAAACAAGGAGGATCAGATGCGGATGTAAAGGCGAG] consensusID : consensus_10975#8 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [ACATATGGATAACAAAAGTGATCAGAAGGATAAGAAAAGTGCAACAAATGGATAACAAAAGTGATCAGAAGGATAACAAGCCAATGTTTAATTACCTATATGTTTTGATACCATCAGTCATTGGTCTCGTCATTGTATGCGTTGGCTTCATCGTGTGGTTC] [+] EMBL AI618986 [ACATATGGATAACAAAAGTGATCAGAAGGATAAGAAAAGTGCAACAAATGGATAACAAAAGTGATCAGAAGGATAACAAGCCAATGTTTAATTACCTATATGTTTTGATACCATCAGTCATTGGTCTCGTCATTGTATGCGTTGGCTTCATCGTGTGGTTC] consensusID : consensus_10975#9 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 109 fasta sequence [AAATAGATATCCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACATTGAAAAAATACTTAAAGAATTTGATGAATATAATTCGCAA] [+] EMBL CD113063 [AAATAGATATCCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACATTGAAAAAATACTTAAAGAATTTGATGAATATAATTCGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10975#5 ------------------------------------------------------------ consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 ------------------------------------------------------------ consensus_10975#4 ------------------------------------------------------------ consensus_10975#0 ACCTTAACGGTGAAGATGAGATACATTCTTCCTTCTAGTTTCTTCATATCAACTTGTTTA 60 consensus_10975#2 ------------------------------------------------------------ consensus_10975#6 ------------------------------------------------------------ consensus_10975#1 ------------------------------------------------------------ consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 ------------------------------------------------------------ consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 ------------------------------------------------------------ consensus_10975#4 ------------------------------------------------------------ consensus_10975#0 TTGGTCATTCTATTGACCAAGTTCTTTAATTGTCAGTTTACTTGTGAACACATCAAAAAT 120 consensus_10975#2 ------------------------------------------------------------ consensus_10975#6 ------------------------------------------------------------ consensus_10975#1 ------------------------------------------------------------ consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 ------------------------------------------------------------ consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 ------------------------------------------------------------ consensus_10975#4 ------------------------------------------------------------ consensus_10975#0 GTAAAATATGAAAAGATCATTTCAGAAAATGCCACATATAGATATTCGGATCATTATGAA 180 consensus_10975#2 ------------------------------------------------------------ consensus_10975#6 ------------------------------------------------------------ consensus_10975#1 ------------------------------------------------------------ consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 ------------------------------------------------------------ consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 -------------------------------------------------------GCANA 5 consensus_10975#4 -------AAACAATTCGTCTTGATCAGAAACTTCCTGTTGTAAGTGGAGATTTATCCAAA 53 consensus_10975#0 TACTTTCAAACGGTTCTTGTTGAACAGCCACCTCCTGTTGTAAGTGGAGATTATGTCAAA 240 consensus_10975#2 ------------------------------------------------------------ consensus_10975#6 ------------------------------------------------------------ consensus_10975#1 ------------------------------------------------------------ consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 ------------------------------------------------------------ consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 AAACAATATGTTGCTCAAAAGGTTACTCCAAAGTTTCCACTTAAATATTATGGTCAAACA 65 consensus_10975#4 AAACAATCTTTTGTTCAAAAGATTACTCCAAAGTTTCCACTTAAATATTATGGTCAAAAA 113 consensus_10975#0 ATTGAAATGCCTACTAAAAAGGTTACTCCAAAGTCTGAATTTAAATATTATGGTCAAACA 300 consensus_10975#2 ------------------------------------------------------------ consensus_10975#6 ----------------------------------------GGATTGCATAGAGAATACTG 20 consensus_10975#1 -----------------------------------CTCGGAGCCAANATTCGGCACGAGG 25 consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 ------------------------------------------------------------ consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 GTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATA 125 consensus_10975#4 GTTAAAGAATTATCCATTTTAAATTCTGGTGTAATAGAAATATACGGAGACGATTTAATA 173 consensus_10975#0 GTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATA 360 consensus_10975#2 -----------------------------TGTAATAGAAATACGCGGAGTCGATTTAATA 31 consensus_10975#6 GTGTGTGGCTCGACGAGGGTGTAAGTATGTGCAATAGAAATACACGGAGAAGATTTAATA 80 consensus_10975#1 AGACCTAATTATTTCGACGACTACAATAAGTCAGAATACCTATGTAGGAAGCATCATGGA 85 consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 ------------------------------------------------------------ consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 GGACAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAA 185 consensus_10975#4 GGACAAATTCATATTTTTCAAAAAATCACCTTTGAAGAGAATTTTAATACTGCAAATGAA 233 consensus_10975#0 GGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAA 420 consensus_10975#2 GGAAAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAA 91 consensus_10975#6 GGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAA 140 consensus_10975#1 AAGCAAACTGATAATATT-AGCATACATACTGTGTGTGTGTGTGACTAGTTGTCTTTGAA 144 consensus_10975#8 -----------------------------ACATATGGATAACAAAAGTGATCAGAAGGAT 31 consensus_10975#7 --------------------TAATCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTT 40 consensus_10975#5 -----------------------------------ACGTAGATATTCTGAAGGAGGTTCG 25 consensus_10975#9 -----------------------------------AAATAGATATCCTGAAGGAGGTTCG 25 consensus_10975#3 AATGAATTAATCGCTGTCGCATGGTATGTTCACAAACGTAGATATCCTGAAGGAGGTCAG 245 consensus_10975#4 AATGAATTCATCGCTGTCGCATGGCACGTTAACGAACGTAGATATTCTGAAGGAGGTTCG 293 consensus_10975#0 GATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAATAGATATCCTGAAGGAGGTTCG 480 consensus_10975#2 AATGAATTCATCGCTATCAAATGGAATGTACTGAAAAGTGTATATCCTGAAGGAGGTGAG 151 consensus_10975#6 GATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAG 200 consensus_10975#1 TATGATGACCTAATGAATGACATACTACTGAAATGATTAGTTGCTTTTGATCTAGGT--G 202 consensus_10975#8 AAGAAAAGTGCAACAAATGGATAACAAAAGTGATCAGAAGGATAA-CAAGCCAATGTTTA 90 consensus_10975#7 AAAGAATTATCCATT-TTAAATTCTGGTAAGCAGGCCTAAAATGATCTTGAAAATGTTCA 99 * ** consensus_10975#5 GTACTTTATCTGATATATCCAAATGGGAAGATGTC-TCTCTACTTTAACGATATACTTAA 84 consensus_10975#9 GTACTTTATCTGATATATCCAAATGGGAAGATGTT-TATTTACATTGAAAAAATACTTAA 84 consensus_10975#3 GTAGTTTATCTGATATATCCAAATGGGAAGATGTT-TATTTACTTTAACGAATTACCCAA 304 consensus_10975#4 GTACTTTATCTGATATATCCAAATGGGAAGATGTC-TCTCTACTTTAACGATATACCCAA 352 consensus_10975#0 GTACCTTATCTGATATATCCAAATGGGAAGATGTC-TCTCTACTTTAACGATATACCCAA 539 consensus_10975#2 GTAACTTATATGATACATTTAAATGGAAAGATGTC-TCTTTACTTTAACGATATACCCAA 210 consensus_10975#6 GTAACTTATATGATACATTCAAATGGAAAGATGTC-TCTTTACTT--------------- 244 consensus_10975#1 GTTGTGTGTTTGACAGATCTTGGCTTATATATCCCATGCTTATTT---CCAGATACCCAA 259 consensus_10975#8 ATTACCTATATGTTTTGATACCATCAGTCATTGGTCTCGTCATTGTATGCGTTGGCTTCA 150 consensus_10975#7 TCTATGTATTAAGGTTAAGTAAAGGTTTAAAGTTTCATGCACCTAGGAAGCATCGTTTGA 159 * * consensus_10975#5 AGAATTTGATGAAAATAATTTGCAATCGTGGATTGATTATCGATACAAATGTTTAGACAA 144 consensus_10975#9 AGAATTTGATGAATATAATTCGCAA----------------------------------- 109 consensus_10975#3 GGGAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGACAAAAATGTTTAGATAA 364 consensus_10975#4 GGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAA 412 consensus_10975#0 GGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAA 599 consensus_10975#2 GGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAA 270 consensus_10975#6 ------------------------------------------------------------ consensus_10975#1 GGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAA 319 consensus_10975#8 TCGTGTGGTTC------------------------------------------------- 161 consensus_10975#7 TAAACAAGGAGGATCAGATGCGGATGTAAAGGCGAG------------------------ 195 consensus_10975#5 ACAAGCCAATACTGTTTTCGAACCATACAATCGAATTCACGTTCCAATAAACTTTATCAA 204 consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 ACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCGATAAACTTGACCAA 424 consensus_10975#4 ACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAA 472 consensus_10975#0 ACAAAACAATACTGTTTCCGAACCATACAATCGAATTCAGATTCCAAAAAACTTTATCAA 659 consensus_10975#2 ACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAATAAACTTGACCAA 330 consensus_10975#6 ------------------------------------------------------------ consensus_10975#1 ACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAA 379 consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 AAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCGAA 264 consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 AAGTGATACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAA 484 consensus_10975#4 AGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAG--------------------- 511 consensus_10975#0 AGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAA 719 consensus_10975#2 AAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAA 390 consensus_10975#6 ------------------------------------------------------------ consensus_10975#1 AGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAA 439 consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 GGAAACATGTTTAAATGCATCGAAACCTGATA---------------------------- 296 consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 TGAAACATGTTTAAATGCCTCGAAACCTGATATGAAATGTCATTTGGTGTT--------- 535 consensus_10975#4 ------------------------------------------------------------ consensus_10975#0 TGAAGCATGTTTAAGTGCATCGAAACCTGATATGGAATGTCATTGGTGTTTAACAGCTAA 779 consensus_10975#2 TGAAACATGTTTAAATGCATCGAAACCTGATATGAAATGTTATTGGTGTTCAACAGCTAA 450 consensus_10975#6 ------------------------------------------------------------ consensus_10975#1 TGAAGCATGTTTAAGTGCATCGAAACTTGATATGGAATGTCATTGGTGTTTAACAGCTAA 499 consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 ------------------------------------------------------------ consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 ------------------------------------------------------------ consensus_10975#4 ------------------------------------------------------------ consensus_10975#0 TCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGATTAATAATTGTTCAAA 839 consensus_10975#2 TCTGTGTAGTAATGGTCATGATACACAATCGAAGGATTGGATGATTAATAATTGTCCAAA 510 consensus_10975#6 ------------------------------------------------------------ consensus_10975#1 TCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGATTAATAATTGTCCAAA 559 consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 ------------------------------------------------------------ consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 ------------------------------------------------------------ consensus_10975#4 ------------------------------------------------------------ consensus_10975#0 GAATAATATGAAAAAGGATAAGAAAAGTGAACAAATGGATAACAAAAGTGATCAGATGGA 899 consensus_10975#2 GATTAATATGCAAATGGATAAGAAAAGTGATCAGAAGGATAACAAGTCAATGTTTAATTA 570 consensus_10975#6 ------------------------------------------------------------ consensus_10975#1 GAATAATATGAAAAAGGATAAGAAAAGTGAACANATGGATAACANAAGTGATCAGA---- 615 consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 ------------------------------------------------------------ consensus_10975#9 ------------------------------------------------------------ consensus_10975#3 ------------------------------------------------------------ consensus_10975#4 ------------------------------------------------------------ consensus_10975#0 TAACAAAAGTGATCAAAAGGATAACAAAAGTGTTCCAAAGGATAACAAAAGTGTTCTCAA 959 consensus_10975#2 CCTATATGTTTTGATACC------------------------------------------ 588 consensus_10975#6 ------------------------------------------------------------ consensus_10975#1 ------------------------------------------------------------ consensus_10975#8 ------------------------------------------------------------ consensus_10975#7 ------------------------------------------------------------ consensus_10975#5 ----- consensus_10975#9 ----- consensus_10975#3 ----- consensus_10975#4 ----- consensus_10975#0 AGGGT 964 consensus_10975#2 ----- consensus_10975#6 ----- consensus_10975#1 ----- consensus_10975#8 ----- consensus_10975#7 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||