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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 360 fasta sequence
[TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG]
[+] EMBL CD093044 [TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG]
[+] EMBL CD093074 [TTCTTCGTCCGATCATTTTCCCCATGAAAAACCAGCAGAGCACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG]
[+] EMBL CD093057 [TTCTTCGTCCGATCATTTTCCCCATGAAAAACCAGCAGAGCACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG]
[+] EMBL CD093039 [TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG]
[+] EMBL CD138311 [TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGCATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
consensusID : consensus_10976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 333 fasta sequence
[CCGACT-GA-CCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTTCGAAGCTAAATTAATCACTCTGGTTAATCTATCCGCCATTTTATGGGCCGCCAAAACGTCAGTCG]
[+] EMBL CD196051 [CCGACT GA CCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGAGGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCT ]
[+] EMBL CD138358 [ CGACTATATCCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGATTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[-] EMBL CD181832 [ CGACT GA CCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCT ]
[+] EMBL CD138334 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCC TGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTTCGAAGCTAAATTAATCACTCTGGTTAATCTATCCGCCATTTTATGGGCCGCCAAAACGTCAGTCG]
[+] EMBL CD138327 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGAGGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCT ]
[+] EMBL CD138293 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCATCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138341 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138274 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138278 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138330 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138359 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138393 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138407 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138286 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAGATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138352 [ TTCTTCGTCCGATCATTT CCCCATGAAAAACCAGCAGAGTACTCCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGAGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138290 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCC AGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGTTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138269 [ TTCTTCGTCCGATCATTT CCCCATGAAAAACCAGCAGAGTACTCCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ]
[+] EMBL CD138370 [ TTCTTCGCCCGATCATTTCCCCCATGAAAAACCAGCAGAGAACTTCTACTGACACAACAGAATTAACAAGCCCTTCCTTGACGGAAACATTTTTCC AGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGGTCCATTGCTGGATTGAGATCTGCTTG ]
[-] EMBL CD138362 [ TCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCT ]
[-] EMBL CD181875 [ TCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTTCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCT ]
[-] EMBL CD138367 [ TCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCAC ]
[+] EMBL CD194860 [ GTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTTCGAAGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10976#0 ------------------TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTA 42
consensus_10976#1 CCGACTGACCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTA 60
******************************************
consensus_10976#0 CTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAAT 102
consensus_10976#1 CTTCTACTGTCACAACAGCATTAACAAGCCCTTCCT------------------------ 96
************************************
consensus_10976#0 ATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGT 162
consensus_10976#1 --------TGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGT 148
****************************************************
consensus_10976#0 TGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGC 222
consensus_10976#1 TGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGC 208
************************************************************
consensus_10976#0 ATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTC 282
consensus_10976#1 ATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCT- 267
***********************************************************
consensus_10976#0 TACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATC 342
consensus_10976#1 ------------------------------TCGAAGCTAAATTAATCACTCTGGTTAATC 297
********************** *******
consensus_10976#0 TATCCGCCATTTTATGGG------------------ 360
consensus_10976#1 TATCCGCCATTTTATGGGCCGCCAAAACGTCAGTCG 333
******************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||